TCONS_00029112 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029112
Unique Name	TCONS_00029112
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1548

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000725:19217..20764-

transcript sequence

>TCONS_00029112 ID=TCONS_00029112|Name=TCONS_00029112|organism=Clytia hemisphaerica|type=transcript|length=1548bp
ctgaaatgttcttttttaaatatcatTTCAGTATGGACAAAACTCCAGAG
AATTCAACACAAACAAAGGACAAGGAAACCCCTAGCCCAACACTAGATGA
CTTAGAGAGAGCCCATGAGGAAGAACTTCAACCCCCGACAAAGAAACAGA
GATTTGAACCGTCTTATGTGGATGACACAGAATGGAGTTTGCCGGCCGAC
ATGGCAGATTATTTCGTTAAACAGTGTTCGAACTTCATTAAACCAACTGA
GATCGAGGAGCACATTACGTCTTTTTGCCCTCCTCCCAAAAACATTGGCA
AGGTCAAACTACTAGACAGTGCCTTCAAGGAAATTCTTTATGAGACCGGA
AAAAAGGCTATCATTGACCAGGATGAGGTATTAATGAATGTGCAAGCCCG
TATTTGGGACGTCCTAGGTCCCTTCTTTCGATTGTGGTTAGGGATGGAGA
CGGACAAGGACAACCTAGAGTCAAGAAGAGTCAACATCAGAGGAGATGAG
GGAGGGCATGGCAAATGCCTCAACTCTCTATGAGAAAACGGTAACCCTGA
TTGGCCAAACGGTCAACAATCTCCTATATCAACGGCACTTCAATGCCCTC
AGTGCTCTTTTTAATGACAAGAAGAAAGCCAAGTCCATGATCAAGGAACT
CAAAGAATTAATAAACAATGATGATACCTACCTATTTTGGGACAAATTTG
AGGAGAAAGTGATAAAAACacaaaagatgaaaatcaaaacaaaacaagcc
TTGAAGGACAATAGTAACCAACAACAATCAAGAAGGACCCCCTCTCGGGG
CTGCCTCCTTTCCAACCGATCGAGGGGAAGGGGGCGTGGAGGTTTTAACT
CATACTATCGATCTTTCAAAACAGACTCAagtaacaacaacaacaacagt
aaCTTTAGAGGCAGAGGTAAGAACTATTTCTCAACCACTGTTTCAAATAG
TACTCAACCAAAGTTTAAGGTATGTCCACCCAGGGGTTCGATGCCTATTT
CAAGAGGATCCAGTCCAGGTCAAGGGATTGGCAGGAAGGTTAGGGTCCTT
TCTAGAAAATTGGAAACAACTCACCAAAGATCCTTCTATTTTAGGCCTGG
TTCAGGGTTATCAGATTCCCTTTATACACAAACAGGGTCCATGGCAAGGG
GTACCTCCAAGGGAGTTAAGAATGAACAAGGTGGAAGATCAGATTGTTAC
GGAAGAGGTAGAGAACTTGTTAAAGAAAGGGGCGATAGAAGTGACCTCAC
CCTGCCCAGGCCAGGTTTTAAGCACTTTGTTTACAGTGAAGAAGAAAGAC
AAAGGTTACAGACCAGTCATCAATTTAAAATTTGTAAACTCACATATCCC
CTATCAACACTTCAAGATGGAGGGTTTGCATCTCATAAAGGATCTCTTAA
ACAAGGACGATCTAATGATAAAACTGGATTTAAAGGATGCATATTTCAGC
GTTCCATTAGGTCCAGAGTCCAGGAAATTTGTCAGGTTCGAGTGGAAAGG
CAAACTTTACCAATTTCTGTGTATGTGTTTCGGGCTTGGTCCAGCTCC

Run BLAST on NCBI

transcript from alignment at sc0000725:19217..20764-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029112 ID=TCONS_00029112|Name=TCONS_00029112|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at sc0000725:19217..20764- (Clytia hemisphaerica)
CTGAAATGTTCTTTTTTAAATATCATTTCAGTATGGACAAAACTCCAGAG
AATTCAACACAAACAAAGGACAAGGAAACCCCTAGCCCAACACTAGATGA
CTTAGAGAGAGCCCATGAGGAAGAACTTCAACCCCCGACAAAGAAACAGA
GATTTGAACCGTCTTATGTGGATGACACAGAATGGAGTTTGCCGGCCGAC
ATGGCAGATTATTTCGTTAAACAGTGTTCGAACTTCATTAAACCAACTGA
GATCGAGGAGCACATTACGTCTTTTTGCCCTCCTCCCAAAAACATTGGCA
AGGTCAAACTACTAGACAGTGCCTTCAAGGAAATTCTTTATGAGACCGGA
AAAAAGGCTATCATTGACCAGGATGAGGTATTAATGAATGTGCAAGCCCG
TATTTGGGACGTCCTAGGTCCCTTCTTTCGATTGTGGTTAGGGATGGAGA
CGGACAAGGACAACCTAGAGTCAAGAAGAGTCAACATCAGAGGAGATGAG
GGAGGGCATGGCAAATGCCTCAACTCTCTATGAGAAAACGGTAACCCTGA
TTGGCCAAACGGTCAACAATCTCCTATATCAACGGCACTTCAATGCCCTC
AGTGCTCTTTTTAATGACAAGAAGAAAGCCAAGTCCATGATCAAGGAACT
CAAAGAATTAATAAACAATGATGATACCTACCTATTTTGGGACAAATTTG
AGGAGAAAGTGATAAAAACACAAAAGATGAAAATCAAAACAAAACAAGCC
TTGAAGGACAATAGTAACCAACAACAATCAAGAAGGACCCCCTCTCGGGG
CTGCCTCCTTTCCAACCGATCGAGGGGAAGGGGGCGTGGAGGTTTTAACT
CATACTATCGATCTTTCAAAACAGACTCAAGTAACAACAACAACAACAGT
AACTTTAGAGGCAGAGGTAAGAACTATTTCTCAACCACTGTTTCAAATAG
TACTCAACCAAAGTTTAAGGTATGTCCACCCAGGGGTTCGATGCCTATTT
CAAGAGGATCCAGTCCAGGTCAAGGGATTGGCAGGAAGGTTAGGGTCCTT
TCTAGAAAATTGGAAACAACTCACCAAAGATCCTTCTATTTTAGGCCTGG
TTCAGGGTTATCAGATTCCCTTTATACACAAACAGGGTCCATGGCAAGGG
GTACCTCCAAGGGAGTTAAGAATGAACAAGGTGGAAGATCAGATTGTTAC
GGAAGAGGTAGAGAACTTGTTAAAGAAAGGGGCGATAGAAGTGACCTCAC
CCTGCCCAGGCCAGGTTTTAAGCACTTTGTTTACAGTGAAGAAGAAAGAC
AAAGGTTACAGACCAGTCATCAATTTAAAATTTGTAAACTCACATATCCC
CTATCAACACTTCAAGATGGAGGGTTTGCATCTCATAAAGGATCTCTTAA
ACAAGGACGATCTAATGATAAAACTGGATTTAAAGGATGCATATTTCAGC
GTTCCATTAGGTCCAGAGTCCAGGAAATTTGTCAGGTTCGAGTGGAAAGG
CAAACTTTACCAATTTCTGTGTATGTGTTTCGGGCTTGGTCCAGCTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016554	XLOC_016554	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00029112-exon-sc0000725-1575043694:19217..20764	TCONS_00029112-exon-sc0000725-1575043694:19217..20764	Clytia hemisphaerica	exon
TCONS_00029112-exon-sc0000725-1510915933:19217..20764	TCONS_00029112-exon-sc0000725-1510915933:19217..20764	Clytia hemisphaerica	exon
TCONS_00029112-exon-sc0000725-1491911889:19217..20764	TCONS_00029112-exon-sc0000725-1491911889:19217..20764	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000725	supercontig	sc0000725:19217..20764 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.391219	0.194302	0.14044	0.0587002	1.24603	1.28895	1.56401	1.76261	0.758465	0.736832	0.804076	0.900322	0.669742	0.633302	0.589781	0.723183	0.883119	0.637436	0.328617	0.357814	0.415961	0.785256	0.49694	0.618525	1.34818	1.07489	0.528577	0.622421	0.267842	0.353758

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00029112 vs. Swiss-Prot (Human)

BLAST of TCONS_00029112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00029112 (transcript) - C. hemisphaerica