TCONS_00029015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029015
Unique NameTCONS_00029015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029015 ID=TCONS_00029015|Name=TCONS_00029015|organism=Clytia hemisphaerica|type=transcript|length=543bp
CCATGATTGTATTAGAGAGGGTGATGGAGAACGACTCCTTGAAAGCTATA
AATTTGCTTTATTGTACCTCAAGCACTACAACCACACAAAGTACAGTTTT
GGCCTTCTGAAGCTGTTCACGGAGATTGAATATCACCCAGATCGTGCGCT
TGGTTTGATATGGGGTCGATTTGTAAATACAAAAGGTATGGATAACACTA
AATGATATAAAACTATATGTAAATTAATGTCATATAATAAAATAGACACC
CTATCAGGGCTGAAAATAAGCGTCGGTTATCGGTCAATGTCCAACTGATT
AAGTCGTAAGACCGACAGAAAAATAGAAACTAGATTGTCAATTAAAAGCC
CTACAAAAtactttatttcttttaaagGATATGCTGGTCATAACATTTCA
ATGGATCTACATTTGGAACATTTAAATGGTTATCTCAAGGAGGGCTTCAG
GGCACTGAGAAGCAATTTAAACCAGTCAAACGCTGATCGAGTAGCTAAAA
CCCTCAACAATGTGAAAGATTTGATCCAGAATACTGAAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000720:3796..4564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029015 ID=TCONS_00029015|Name=TCONS_00029015|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at sc0000720:3796..4564- (Clytia hemisphaerica)
CCATGATTGTATTAGAGAGGGTAAGTGAAATGAGAAAAAAAGTGTAGTTT
AAGATCAGTACCTGTTATCATTGTTCTAGATTTTAAATAAGAAATGAGTA
AAATGTAAAGGTTATGTTTTTTTCAGGTGATGGAGAACGACTCCTTGAAA
GCTNAAAAAAAGTGTAGTTTAAGATTAGTACCTGTTATCATTGTTCTAGA
CTTTAAATAAGAAATGAGTAAAATGTAAAGGTTATGTTTTTTTCAGGTGA
TGGAGAACGACTCCTTGAAAGCTATAAATTTGCTTTATTGTACCTCAAGC
ACTACAACCACACAAAGTACAGTTTTGGCCTTCTGAAGCTGTTCACGGAG
ATTGAATATCACCCAGATCGTGCGCTTGGTTTGATATGGGGTCGATTTGT
AAATACAAAAGGTATGGATAACACTAAATGATATAAAACTATATGTAAAT
TAATGTCATATAATAAAATAGACACCCTATCAGGGCTGAAAATAAGCGTC
GGTTATCGGTCAATGTCCAACTGATTAAGTCGTAAGACCGACAGAAAAAT
AGAAACTAGATTGTCAATTAAAAGCCCTACAAAATACTTTATTTCTTTTA
AAGGATATGCTGGTCATAACATTTCAATGGATCTACATTTGGAACATTTA
AATGGTTATCTCAAGGAGGGCTTCAGGGCACTGAGAAGCAATTTAAACCA
GTCAAACGCTGATCGAGTAGCTAAAACCCTCAACAATGTGAAAGATTTGA
TCCAGAATACTGAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016496XLOC_016496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029015-exon-sc0000720-1575043694:4545..4564TCONS_00029015-exon-sc0000720-1575043694:4545..4564Clytia hemisphaericaexon
TCONS_00029015-exon-sc0000720-1575043694:3796..4318TCONS_00029015-exon-sc0000720-1575043694:3796..4318Clytia hemisphaericaexon
TCONS_00029015-exon-sc0000720-1510915933:4545..4564TCONS_00029015-exon-sc0000720-1510915933:4545..4564Clytia hemisphaericaexon
TCONS_00029015-exon-sc0000720-1510915933:3796..4318TCONS_00029015-exon-sc0000720-1510915933:3796..4318Clytia hemisphaericaexon
TCONS_00029015-exon-sc0000720-1491911889:4545..4564TCONS_00029015-exon-sc0000720-1491911889:4545..4564Clytia hemisphaericaexon
TCONS_00029015-exon-sc0000720-1491911889:3796..4318TCONS_00029015-exon-sc0000720-1491911889:3796..4318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000720supercontigsc0000720:3796..4564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229429	0.232769	0.175327	0.235328	14.6088	10.0114	5.85406	5.40038	1.5796	2.73438	1.55942	0	1.04167	0.127495	0.331397	0.824978	2.37188	1.35156	0	0.487001	0.410416	0.36204	0.954304	0.484244	0.622431	0.737634	0.508956	0.815631	0.884005	0.219957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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