|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028982 ID=TCONS_00028982|Name=TCONS_00028982|organism=Clytia hemisphaerica|type=transcript|length=1197bp
CCGCCACTGGGCTTTTTAACAAGAAATGAGGGACTAACATGTTCAACAGC
AACATCAACATCTTCAGGGCGAACGAAGACTCCTTGCTGTTCTAATTCGT
CAAACTTTGATTGAAGAAGTTGTTTGTTTTCAGGTGAGTACGACGGTACA
CGAAGTTTCCGATTCGGTGGTGATACTGGACCGATGTTAACTCTGGCTCT
CACTTTACCGAAGGTGTCATTGTAGCGACCAATGGTAGGATCGAAAACTG
AGGAATACTTTTCATGAAGGGTATCGAAGTGGTCATTCCATTCATTGGAC
AGCTGTTTGTCAATCGTGATGTTGTGGAGAGAACTGGTTGACGGTTGATG
GTTGATTGTTGGATTAGGTAATTTCCCAATTGGCTGGCAGATGGTTGGCT
CGATTTCGGACGTATTTCTAATCTGGCAAAAATGATCACTATTTTTCAAA
CGAATAGCAGAATTTGTGTAATTTGTAAGACTTATCTTACCATCAACAAC
AGGAGTGATTTGGGGTCGGGGCCATCTCGATGTATCATAAGTTTTTGAGT
CTGTACGAGGTTCTAAAGCGACAAAtttctcatccataaattttggaaTA
TCAAGCATGATACTTTCACCAGGGAGGACGGTACTAGGTCGTTGAGTACG
GCAAACAAACGTTTGAATTCTGCGCATAGATGGGTGATCAGTGGTGGGAG
AACATGCGTAAGGGACTACGTCCTTGTCCTTAATTATGATGTGTTTCTTT
GCAGATCGAATAGCAATGTCATTGAATTCAAGGAAAGGTTCACCAGCAAT
GATATCAGATCCTAGATCACCTTTAATAACAAGGGCATCAAGTCTGAATG
TATGTGAACCCCGAGTTATGGAAACGTTTTTAATTTCACCAAGTGTGTTT
AAAGGTGTTGTTACATCAGCTTGGACAGCTCCTTGGACAGTTGTTTGAAT
GACTAAGCCTACAGATTTAGCGTAACGTTCACTGACAAGGCTTGATTCAG
CACCTGTGTCAAGACAAACAGTTGCTGGAAATTGTTTGTAAAAACATTGC
ATGTGAGGGGAGCTACTGGTACTAACACGACGTTGAATGACATGTGATCG
TTGGATAATTTGTGAAGAATTTTCTTCTGGCTGAAATTCATCAGTTTGTG
GGTCGAACATTGTTGGGTCCTCAATTTCAACTTGTCTAACTCTGCAC Run BLAST on NCBI protein sequence of TCONS_00028982-protein >TCONS_00028982-protein ID=TCONS_00028982-protein|Name=TCONS_00028982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
CRVRQVEIEDPTMFDPQTDEFQPEENSSQIIQRSHVIQRRVSTSSSPHMQ
CFYKQFPATVCLDTGAESSLVSERYAKSVGLVIQTTVQGAVQADVTTPLN
TLGEIKNVSITRGSHTFRLDALVIKGDLGSDIIAGEPFLEFNDIAIRSAK
KHIIIKDKDVVPYACSPTTDHPSMRRIQTFVCRTQRPSTVLPGESIMLDI
PKFMDEKFVALEPRTDSKTYDTSRWPRPQITPVVDGKISLTNYTNSAIRL
KNSDHFCQIRNTSEIEPTICQPIGKLPNPTINHQPSTSSLHNITIDKQLS
NEWNDHFDTLHEKYSSVFDPTIGRYNDTFGKVRARVNIGPVSPPNRKLRV
PSYSPENKQLLQSKFDELEQQGVFVRPEDVDVAVEHVSPSFLVKKPSG Run BLAST on NCBI transcript from alignment at sc0000717:89261..90457 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028982 ID=TCONS_00028982|Name=TCONS_00028982|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at sc0000717:89261..90457 (Clytia hemisphaerica)
GTGCAGAGTTAGACAAGTTGAAATTGAGGACCCAACAATGTTCGACCCAC
AAACTGATGAATTTCAGCCAGAAGAAAATTCTTCACAAATTATCCAACGA
TCACATGTCATTCAACGTCGTGTTAGTACCAGTAGCTCCCCTCACATGCA
ATGTTTTTACAAACAATTTCCAGCAACTGTTTGTCTTGACACAGGTGCTG
AATCAAGCCTTGTCAGTGAACGTTACGCTAAATCTGTAGGCTTAGTCATT
CAAACAACTGTCCAAGGAGCTGTCCAAGCTGATGTAACAACACCTTTAAA
CACACTTGGTGAAATTAAAAACGTTTCCATAACTCGGGGTTCACATACAT
TCAGACTTGATGCCCTTGTTATTAAAGGTGATCTAGGATCTGATATCATT
GCTGGTGAACCTTTCCTTGAATTCAATGACATTGCTATTCGATCTGCAAA
GAAACACATCATAATTAAGGACAAGGACGTAGTCCCTTACGCATGTTCTC
CCACCACTGATCACCCATCTATGCGCAGAATTCAAACGTTTGTTTGCCGT
ACTCAACGACCTAGTACCGTCCTCCCTGGTGAAAGTATCATGCTTGATAt
tccaaaatttatggatgagaaaTTTGTCGCTTTAGAACCTCGTACAGACT
CAAAAACTTATGATACATCGAGATGGCCCCGACCCCAAATCACTCCTGTT
GTTGATGGTAAGATAAGTCTTACAAATTACACAAATTCTGCTATTCGTTT
GAAAAATAGTGATCATTTTTGCCAGATTAGAAATACGTCCGAAATCGAGC
CAACCATCTGCCAGCCAATTGGGAAATTACCTAATCCAACAATCAACCAT
CAACCGTCAACCAGTTCTCTCCACAACATCACGATTGACAAACAGCTGTC
CAATGAATGGAATGACCACTTCGATACCCTTCATGAAAAGTATTCCTCAG
TTTTCGATCCTACCATTGGTCGCTACAATGACACCTTCGGTAAAGTGAGA
GCCAGAGTTAACATCGGTCCAGTATCACCACCGAATCGGAAACTTCGTGT
ACCGTCGTACTCACCTGAAAACAAACAACTTCTTCAATCAAAGTTTGACG
AATTAGAACAGCAAGGAGTCTTCGTTCGCCCTGAAGATGTTGATGTTGCT
GTTGAACATGTTAGTCCCTCATTTCTTGTTAAAAAGCCCAGTGGCGG Coding sequence (CDS) from alignment at sc0000717:89261..90457 >TCONS_00028982 ID=TCONS_00028982|Name=TCONS_00028982|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0000717:89261..90457 (Clytia hemisphaerica)
TGCAGAGTTAGACAAGTTGAAATTGAGGACCCAACAATGTTCGACCCACA
AACTGATGAATTTCAGCCAGAAGAAAATTCTTCACAAATTATCCAACGAT
CACATGTCATTCAACGTCGTGTTAGTACCAGTAGCTCCCCTCACATGCAA
TGTTTTTACAAACAATTTCCAGCAACTGTTTGTCTTGACACAGGTGCTGA
ATCAAGCCTTGTCAGTGAACGTTACGCTAAATCTGTAGGCTTAGTCATTC
AAACAACTGTCCAAGGAGCTGTCCAAGCTGATGTAACAACACCTTTAAAC
ACACTTGGTGAAATTAAAAACGTTTCCATAACTCGGGGTTCACATACATT
CAGACTTGATGCCCTTGTTATTAAAGGTGATCTAGGATCTGATATCATTG
CTGGTGAACCTTTCCTTGAATTCAATGACATTGCTATTCGATCTGCAAAG
AAACACATCATAATTAAGGACAAGGACGTAGTCCCTTACGCATGTTCTCC
CACCACTGATCACCCATCTATGCGCAGAATTCAAACGTTTGTTTGCCGTA
CTCAACGACCTAGTACCGTCCTCCCTGGTGAAAGTATCATGCTTGATAtt
ccaaaatttatggatgagaaaTTTGTCGCTTTAGAACCTCGTACAGACTC
AAAAACTTATGATACATCGAGATGGCCCCGACCCCAAATCACTCCTGTTG
TTGATGGTAAGATAAGTCTTACAAATTACACAAATTCTGCTATTCGTTTG
AAAAATAGTGATCATTTTTGCCAGATTAGAAATACGTCCGAAATCGAGCC
AACCATCTGCCAGCCAATTGGGAAATTACCTAATCCAACAATCAACCATC
AACCGTCAACCAGTTCTCTCCACAACATCACGATTGACAAACAGCTGTCC
AATGAATGGAATGACCACTTCGATACCCTTCATGAAAAGTATTCCTCAGT
TTTCGATCCTACCATTGGTCGCTACAATGACACCTTCGGTAAAGTGAGAG
CCAGAGTTAACATCGGTCCAGTATCACCACCGAATCGGAAACTTCGTGTA
CCGTCGTACTCACCTGAAAACAAACAACTTCTTCAATCAAAGTTTGACGA
ATTAGAACAGCAAGGAGTCTTCGTTCGCCCTGAAGATGTTGATGTTGCTG
TTGAACATGTTAGTCCCTCATTTCTTGTTAAAAAGCCCAGTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028982-exon-sc0000717-1491911889:89261..90457 | TCONS_00028982-exon-sc0000717-1491911889:89261..90457 | Clytia hemisphaerica | exon |
| TCONS_00028982-exon-sc0000717-1510915933:89261..90457 | TCONS_00028982-exon-sc0000717-1510915933:89261..90457 | Clytia hemisphaerica | exon |
| TCONS_00028982-exon-sc0000717-1575043694:89261..90457 | TCONS_00028982-exon-sc0000717-1575043694:89261..90457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000717 | supercontig | sc0000717:89261..90457 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
|
