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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028936 ID=TCONS_00028936|Name=TCONS_00028936|organism=Clytia hemisphaerica|type=transcript|length=1263bp
gCTAATTACTGGTAGTGCTTTCAATCGTTGAAGTGGAcaaattctttgtt
ttcttaACATTTGACTTaaaatctttaacatatttgtcTCTCCGTCGTAT
ACTTGTTCGTTTACGAATTAACTCTTTGACGTCTTTATNaatctttaaca
tatttgtcTCTCCGTCGTATACTTGTTCGTTTACGAATTAACTCTTTGAC
GTCTTTATTAAAAACAATTAGTATAATAGGATCAGCAAGTCCATTAAGCA
TAGCTATGAATACTGCAGAAAATGTAAAACTGTCGTTGTAAGTAGGAATA
ACGTTTTGAATAATGGCTAAAATGTTTTGAACCAAGAACGGTAACCATAA
CACTAAAAAGGTGGCTATGATTACGATAGACGTCAGAACTGATTTACCAT
GCCGTGGGCCTTTATTTTGTGGTATTCCAACCATAGTTTTACCAATAGCA
TTAACATGTTTTCTAGCTGTGTTAAGTACTGCCATATTACTTACAGTAag
aataacaaaagaaaaagcaacaGTACCGGTCAAGGCGTATAACAATCCTT
TGCTGTCAAGCTTGCATACTAAAAATAAGAGGGTTGGTACACTCGATGAT
AATATCCAGGATATGAGAATCATGATTTCAAACACTTTGTTTTTCCTCAT
CCTTTGATGTTTGAATGGAAAGTGGATAACGAATACCTTCTCCAACGTTT
GTATCAACATCGAAAAGAACGCTTCCAACAGCAAGCCATTTGTTATTAAG
CTCCATAAGAAGGCATGGTTTTCATCAAGAGCATTGACAATGGATATTGC
TCCCAACAAAATATGTGTCCATTGTAAACTAATGAAACACCGGATGGAAN
GCTCCCAACAAAATATGTGTCCATTGTAAACTGATGAAACACCGGATGGA
AGACTTGGTGCGAAGTTTACGGttcgaaatcaaaacaaacatcacAAACA
AATTGACGAGGATGATTAAGTTTGATTCGATCAAAAAGCATAATTCAAAC
ACACTTTCATTGCCAACAGAAAAGCAGTCCTTATCATTCTCAGCAGATTC
AGAATTTGAGCTGTTTTTTTCTGTGTTTGACAAGACAACCTCAACCTCAT
TTAAATGATCAAAGATTGGAGGTGAGTCGCCAGGTTTATCAGAATCTTCA
GTTGCATTGATGATCTCAGTTCCGCTGAccaacaaaaataaatcaaagcA
AATAAGAATGTTTGTTATTGATAGTACAAGAGATATATTGGACATGTCGA
TACTTGATTGTGA Run BLAST on NCBI protein sequence of TCONS_00028936-protein >TCONS_00028936-protein ID=TCONS_00028936-protein|Name=TCONS_00028936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MLIQTLEKVFVIHFPFKHQRMRKNKVFEIMILISWILSSSVPTLLFLVCK
LDSKGLLYALTGTVAFSFVILTVSNMAVLNTARKHVNAIGKTMVGIPQNK
GPRHGKSVLTSIVIIATFLVLWLPFLVQNILAIIQNVIPTYNDSFTFSAV
FIAMLNGLADPIILIVFNKDVKELIRKRTSIRRRDKYVKDX Run BLAST on NCBI transcript from alignment at sc0000715:70686..71948 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028936 ID=TCONS_00028936|Name=TCONS_00028936|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at sc0000715:70686..71948 (Clytia hemisphaerica)
TCACAATCAAGTATCGACATGTCCAATATATCTCTTGTACTATCAATAAC
AAACATTCTTATTTgctttgatttatttttgttggTCAGCGGAACTGAGA
TCATCAATGCAACTGAAGATTCTGATAAACCTGGCGACTCACCTCCAATC
TTTGATCATTTAAATGAGGTTGAGGTTGTCTTGTCAAACACAGAAAAAAA
CAGCTCAAATTCTGAATCTGCTGAGAATGATAAGGACTGCTTTTCTGTTG
GCAATGAAAGTGTGTTTGAATTATGCTTTTTGATCGAATCAAACTTAATC
ATCCTCGTCAATTTGTTTgtgatgtttgttttgatttcgaaCCGTAAACT
TCGCACCAAGTCTTCCATCCGGTGTTTCATCAGTTTACAATGGACACATA
TTTTGTTGGGAGCNTTCCATCCGGTGTTTCATTAGTTTACAATGGACACA
TATTTTGTTGGGAGCAATATCCATTGTCAATGCTCTTGATGAAAACCATG
CCTTCTTATGGAGCTTAATAACAAATGGCTTGCTGTTGGAAGCGTTCTTT
TCGATGTTGATACAAACGTTGGAGAAGGTATTCGTTATCCACTTTCCATT
CAAACATCAAAGGATGAGGAAAAACAAAGTGTTTGAAATCATGATTCTCA
TATCCTGGATATTATCATCGAGTGTACCAACCCTCTTATTTTTAGTATGC
AAGCTTGACAGCAAAGGATTGTTATACGCCTTGACCGGTACtgttgcttt
ttcttttgttattctTACTGTAAGTAATATGGCAGTACTTAACACAGCTA
GAAAACATGTTAATGCTATTGGTAAAACTATGGTTGGAATACCACAAAAT
AAAGGCCCACGGCATGGTAAATCAGTTCTGACGTCTATCGTAATCATAGC
CACCTTTTTAGTGTTATGGTTACCGTTCTTGGTTCAAAACATTTTAGCCA
TTATTCAAAACGTTATTCCTACTTACAACGACAGTTTTACATTTTCTGCA
GTATTCATAGCTATGCTTAATGGACTTGCTGATCCTATTATACTAATTGT
TTTTAATAAAGACGTCAAAGAGTTAATTCGTAAACGAACAAGTATACGAC
GGAGAgacaaatatgttaaagattNATAAAGACGTCAAAGAGTTAATTCG
TAAACGAACAAGTATACGACGGAGAgacaaatatgttaaagattttAAGT
CAAATGTtaagaaaacaaagaatttgTCCACTTCAACGATTGAAAGCACT
ACCAGTAATTAGc Coding sequence (CDS) from alignment at sc0000715:70686..71948 >TCONS_00028936 ID=TCONS_00028936|Name=TCONS_00028936|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000715:70686..71948 (Clytia hemisphaerica)
ATGTTGATACAAACGTTGGAGAAGGTATTCGTTATCCACTTTCCATTCAA
ACATCAAAGGATGAGGAAAAACAAAGTGTTTGAAATCATGATTCTCATAT
CCTGGATATTATCATCGAGTGTACCAACCCTCTTATTTTTAGTATGCAAG
CTTGACAGCAAAGGATTGTTATACGCCTTGACCGGTACtgttgctttttc
ttttgttattctTACTGTAAGTAATATGGCAGTACTTAACACAGCTAGAA
AACATGTTAATGCTATTGGTAAAACTATGGTTGGAATACCACAAAATAAA
GGCCCACGGCATGGTAAATCAGTTCTGACGTCTATCGTAATCATAGCCAC
CTTTTTAGTGTTATGGTTACCGTTCTTGGTTCAAAACATTTTAGCCATTA
TTCAAAACGTTATTCCTACTTACAACGACAGTTTTACATTTTCTGCAGTA
TTCATAGCTATGCTTAATGGACTTGCTGATCCTATTATACTAATTGTTTT
TAATAAAGACGTCAAAGAGTTAATTCGTAAACGAACAAGTATACGACGGA
GAgacaaatatgttaaagattNATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028936-exon-sc0000715-1491911889:70686..71948 | TCONS_00028936-exon-sc0000715-1491911889:70686..71948 | Clytia hemisphaerica | exon |
| TCONS_00028936-exon-sc0000715-1510915933:70686..71948 | TCONS_00028936-exon-sc0000715-1510915933:70686..71948 | Clytia hemisphaerica | exon |
| TCONS_00028936-exon-sc0000715-1575043694:70686..71948 | TCONS_00028936-exon-sc0000715-1575043694:70686..71948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000715 | supercontig | sc0000715:70686..71948 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050909 | sensory perception of taste |
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| biological_process |
GO:0050909 |
sensory perception of taste |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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