TCONS_00028892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028892
Unique NameTCONS_00028892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028892 ID=TCONS_00028892|Name=TCONS_00028892|organism=Clytia hemisphaerica|type=transcript|length=958bp
CCTCTTCTCTCCACTGAGGTTGATGAATACTTGTTAGCACTGAGTCAAGA
ATATCGTGGCAGTATTAGAGATTCACCATTCTATCTGAAGCCGAAAACCA
TAAAGCGAGACATCGTGCGCTACACTGATCGATATAAGCAGAATCAAGCT
AAAGGTGATGCAACAGAGACTTGGACACCAGATTGGAATTTTATTCCCGG
AGAATTGAAACCAGCAAAAGTGAGGAAGCTATCCAAGCGTGGTGGTGCTA
GAGAAGACAGGTGGTGATAAGGGTGCGACAGAGGGTACGAAGGAAGATGA
ACAAGAAGTTGTTTATGAAGAAGATGATGACTTTGAGGAGGAGAATGATT
ACAATTTCGATTATTACAATGATGGTGGAGATAAGTATGGAGATGACGAG
GATGGTGAAGAAGGACCTGTTTATTGATGGAAGGGTTGACTGGTGTCAGT
TCTGGTGGTTCTACTGGAGAGATCGATCGTTCATAATGAAGTAGAAATAA
AGGTCAGCTCAGGAGAGGTTATGCATATCATTGAAATCGTGAATCTTTTG
AATTTGCGATTTGAGAAATACTCGAGAAATAATTGTATTGGAGAAATGGA
GGAAGTCTTGATTTCATGATAATGATCTGTGCATATCATGTGTGTTATTG
TTATTCTGACAAAATGAGATCTTATTAAAATAACAAACGTCCAAACGTCG
ACTTTGGGTAATTCGGAGCGTATGCAAAATCCACAATTCATACAATGGGA
TGGTTTATTTCGGTGTAATTGGATACGATGATTGAGACATAAAATTCAAG
GCTGGAACATTTAAGTTGGGAATTATTTGATATATTTCCTTCAACAGTGA
ATGGTCTTGTACTGCAGTTGTTACTTGCTTTCGAAAATatcttgtttttg
ttaatttttgtaaataatatCGGGGAGCATAAAAACTATGAATAAATCGT
GGAAGACA
Run BLAST on NCBI

transcript from alignment at sc0000714:102795..110211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028892 ID=TCONS_00028892|Name=TCONS_00028892|organism=Clytia hemisphaerica|type=transcript|length=7417bp|location=Sequence derived from alignment at sc0000714:102795..110211- (Clytia hemisphaerica)
CCTCTTCTCTCCACTGAGGTTGATGAATACTTGTTAGCACTGAGTCAAGA
ATATCGTGGCAGTATTAGAGATTCACCATTCTATCTGAAGCCGAAAACCA
TAAAGCGAGGTGCTGAAAGTGGTTTTTCTTAACTTCTTTACAAAGTTTAT
ATTCATGAATCTTTTAATAAGTTACATTGTACTAGATAGATTTTAAGAGC
TTTGAATTTTTCCAAATGTCCTTTAAAACTGCTTGAAATCAATGAGATGT
ATAAAATGTTAAAGTTCTGCTTTGTAATTTTTGATTTTGTAATTGTTTTG
ATTTTGGGATGTTTCTTCTTTAGACATCGTGCGCTACACTGATCGATATA
AGCAGAATCAAGCTAAAGGTGATGCAACAGAGACTTGGACACCAGGTACC
AGAATAATGGGTTTCTTTTGAATACGATTTTAAGAGGAATAATGCAATTC
GAATCCGCTAAAAACAACTTAAAGCATTTTAATTTACAATGAAACAGACA
TTATTCTGAAAATTATTGTGTAGATGGAAGATAAAGAAATAAAAGATAAA
CTTTCCTTCCTTTGGTGGAATAAACATGTAAAAAGTTAGAAAGTTTTCAG
CTACAACAAGCCATATTCTAGGGCATTTAAATCTTTTGATGGAGTAATGC
TGCAATTCATAGTTGCACTGTAGGCTTACCCGATAAATAAGTTGAGTGAT
TATTCAAATTGTTTATTAATGATTTGTTGTTCAAATTTTAAGATTGGAAT
TTTATTCCCGGAGAATTGAAACCAGCAAAAGTGAGGAAGCTATCCAAGCG
TGGTGGTAAGATTTTCTCAGTCCATTTTGCAATGTTATCATTAAAATACA
TTTCGTATGAAACTGATAGCGTTTTTTCAGTGGATATATGAATGTTTCTA
CAATTCTGTTTGTTGTTCTTTGAAACTGCTGATTTTCATTTAGTTTTGCT
TTAATTTCAGCCAAGGTGAATGTATCTTCCTCGACCAAACTACCAAACAC
AGCAGTAGATGGTAAAGAGGTCCTCAAAAGGCTAGAGGTAATATTCTTTA
AAGTTGAAAAGATGGGCAAAATGATTATAAAACTTTGACATGACGTATTA
CACGAATAATTGCTTTCAGCTAAATATTTGAAGCTACTGAATTAAAGGAT
ACTGCAGTGATCTAACCCTTTTCCCCTCTTATCTTTTTGTAGGTGCTAGA
GAAGACAGGTGGTGATAAGGGTGCGACAGAGGGTACGAAGGAAGATGAAC
AAGAAGTTGTTTATGAAGAAGATGATGACTTTGAGGAGGTTTTAAAAAAA
CATAAATATCCTTGTTTCAAGTTATTTTATTGTTTCTGTTTGGGTGGGGA
GAGCAATCTTTTTCAATCCTTTTCAAGAGGTTGCCTTTTGTTGTTGTTTA
CTTTTACCTTTCATTTGTTGTTTTTCTCCAGTCATCAACTATTGTCTATT
AATTCCTTTTTCTTTTCTTTCTAGAAATCATACACGTTTTTTTTATAAGA
ATAACTTACATAAGATTATCATTGTGAAATTTCAGAGTTAGAACAATAGG
CCTATTGTTTAGAAAAATAGAAAAATAAGAATAATTAATGCTCACCCTCA
GCCAAATACACTATTCTTATTAAAAAAGCGTGTACAACAGGAAAAAGATT
GTTTTTGTATTAGTTTCCGTTATTCAACGATGATGGTCCCCTCTCTCTCG
TGCCATTTCACTTAATCGATTATCTCTTAAAGCTGTTGAAAGTCAAAATT
AGAAATTTCTTTTTCAGTTATAGTATAGTCTTGTGACATTTTTCGTTTCA
TTAATGGCCTTCTTTCTGCCTCTTAATACGCGACCCTTGACACTCACGAA
TTTCTCTTGTATCTTACTCGTGTGTTTGTACGAAATTTGACAACGAAAAA
TACGTATTGGAGAATTTTTTCACTTTAAAAGAACGCTTTGACAATTGTTC
TTATAATTAAGATTATAGAGCAGAACACTTCCTCAATAAGGAACTAATGA
TAATTAAAAACTATGTTTATGTTCATTAACTCATAATTCTATTTTTGATA
CTGTGTACAAATGATGATGGAGAAAACAAAGCGAATTTTCAGTCCGGGGA
AGATGTCCTTATTTATCAGACTAAAAAATGAAGAGTGGTGATATCGAGCC
ATTATAACTCAAAGAAAACAAGAATTTCAGTACAATTAGTAATTTTGTAT
TCCCAAATAAGATATAATACTAAAAGTGCAGCTAAAGCTACTTTCAAAAT
GTAATTATTGATTAACTAACAGGTCAAAAAGTGAAGCACTCGAATTTTCG
GAGTTACCGATACTTTCCGGTTATTCATCTCACATGTAGCTTGTGATAAT
TTCATTTCAACTTTTGATAGTATGATAAAGTAACCTTAATTATATTATAT
AATGGACATTAGATCTACCCTAAAGAATAAACAGCTTTATATAGATGCTG
AAAACTTTAGTGCATGAAAAATATTAAATAACAAATCAAAAGGCAAAAGC
AAGTAGTTTATTAAAAGTTGTTTATTTTGACTTCTGCATTTTTAAAAATA
TCTGAATCAACGTCTTCAATGATGTTCTCATGGTTGCAAATCTTGCCTTC
GAAACTTTTGATCATTCGATACAAAATCAATGCTTTTCTAAATTCTTCAT
TTTTCTCCCAATGTTCAGCAAGCATTAAAGTTTCACGAAATAAGTTCCCG
GTGTATTTTTGGTTATCTATTTCTGGTGATACTTCAGTTTGTAAATACTC
CCTCGCTTCTTCGACTTTGTTTTGGTCAATCAAATGACAATAAATTAACA
GTTTCACCCGACTTGGACGACAAAATACATAAGGTGAAAACACAGAAAGA
TTGTATTGGAGCATTGCGACTATGTGTTCCCTAGTGGTAGTCCCCGTAGT
AGTACACTGCAAGATGGTCATTTTACAAAAAGCATCCAGATCGTAATGTG
TGCAGCGTACTGCAAGCCATTTCTTGAAATAGCCTTTACTCTGTTCAAGC
AAATTGACGTCATAAAGGGCACGGCCAATGTCACGAAATGAGTCATACGA
ACTTGATAAATCCAATGATTCGATAATTTCAAGACCTTCTTCGACTTTCC
CTTTCAAGATCTTACAACAGGCAATTTGAACCTTGCTATTGGTTCCATAT
GGATTATCATCATCTAACTCTGGTATTTTGAAGAGTAATTCCAACGCTTT
ATCATACTCTCCCAACTCTTTGTAACAAATGCTTACCAAAAATGTTTCTC
TTGAAGTAAAGAATATTTTCTTAATACATTCCAAAGCTTTCTTCCAATGT
CCATTTTTCATCAAAACCATTTCATTAAAGCTATTGTTGGTTTGATAATG
ACTTTCTGGTGAATAAAGTTCACGATTTGCGTACAGAAAAATCAATAAAC
GATCTTTAGCCGTCGATGATGGAACGTTTAAAAGAATCCTCGCTTCCAAA
CTGTCCAGTGCTGACAGTATATATTCAGCTTTCCTTGATTGTTCGTTTTC
AATACGCTTATCTCGCAGAAAACCCAGTTCAATAAGATAAGGCACTGGAT
GAGATTGATCATTTTTCTTAAAATTATAAATATAACTTAAAATAACAAAC
TTGTCGACGAAGTTGAGCATTGTCATCATAGTTCCAACGACAAAGAAATC
ATCGGATAAGAATTGCAGCAAAGTATCCCGATAACATGGTTGCTTATAAA
TGAACATAATTTGATTATACCAAAGAATTTTTTCTTCATTATAATCATGT
TGAATCGTAAGGTTTTTCCCTGCCATTGCAATAAGCTTTTGGATAGTATG
TCTTTTCCGATTTTTCTGTATTATATAAATTTTGATAGCCTCTTGGTACA
ACGAATGAATAGTCAAATAATTCACTTTTTTATGAGTGAACTCGACGATC
CTTTCGTTTCTTTCAACGATGGAATAGCTAGTCAAAATTTGTTTGACTTT
GTTATATTCTCTCTTCCGTTTGTAACATCTTTCAAGAAACTCTTCTTTCA
TGCAAGAACCGTCTAGAATACCGACAACTGATAAAAGTTCAATGGCTTCT
GGATTGTTTTTCTCAATTCTCTTGATGGTTTTTAAGAAAGAAGCGAGTAC
TGAAGTGTTGATTCCCAAGCCAAGAGCAACCCTTTGAGACAAAACATCAC
CTTTATCTTCTTGGAGATCTGTTAGGTATTCAGCCACAGACATTCCAGTT
TGATGTATTGTTGCCACCGCATGTTGAAGTCCTAATGGATGACATTCTAA
TTCGTCTGTCAGTTTCGTTATATCCTGGATGCTAGGTGTAGGTAGATGGT
CTTTTAAAAACTGGATTGCTATTGGTTGAGCCCAGTTCTCCAATGGAATG
AATTCAAATCCTTGTCCCCAATGTTTTATTTGTGTTGTGATGATATTGTG
TTGAGAGAGGTCCAAGTAATCGCTCAATTGGCCAACATCAGTGCAGTTAT
CGTAAATGTAAAGCACTCTTTCATTCATAAAGTACGTCTTCAGAAGGTTC
ACAATGATTTTGACGTTGGTTTTTTCGTGAAATTGGAGGATAGAGGCGAT
GTTCGTGAATATATCTTTGATGTTATCGACATTAACCCAAATCACGTGAT
CGTAATTAGTTTTATTGATGACGTAATATTGTTTTGCAAGTTCACTTTTA
CCGACACCTGGGATACCAGAAATCACCACATTAGATTTGTTGTTAACATT
TAAATGTTGATAAATTTCGCCCAATTCGTTTTGTCTCCCGATAAAGCTTT
GGTTTGCTGGTGAAAGGTCATATTCAAAAGACGGTAACAAGTTATTCAGT
TCGTTTTGAGGGCATCCTAAAGCTAGTAATGGTTTTTCCAGATATCTGAA
GGACTTTCGATACTCTACTGTGGAGATTGATACCTGACCATGCTGCATTC
GATTTCTTTCGAGTTTCAATCGAAGAGCATTTGCAATGTCATCAATATCG
TTGACATCTGGTTCTTTATCCCAACCATTGGAAGGTGCCTTGCAACCACA
TAATGTTCGTATCAAAAGAAAAAGCAAAGTGATATCAAATTGTGTTGAAT
CTGTTTGCTGAGATTGTGGAAAGACTTGATCGTACTGGTCGTTTTTCAGT
ACCCCTTTCTTTTTCAATTTATCCAACTCTTTCTTGTGTTTTGTCTGTGA
CAACTCTTGATACAATGTCGTTGGATTTGTTGAAAACTTTTGATGAAATA
AATCAAGTAAGCATTTGGTAGATTTCTCACGTAAGAGTTGCTGTTTGAAA
CCGTTCTTCTGTTGTTGTGTCGGATATTTTGTTTGTAATCCAATATTCGC
TGAAGCCATTATCGTTTCAGATTTTACTTTCAGGTCACCATCTTGCCCTC
TTCGACAATGTTCATGTCTGAACTATTTTCTTTAACTAACGTAATCAGGA
TATCAGTTCATTATGATTATATAATATCTGATGTATTGATCGATCCTTAT
TAATCGAGCTCATCACAGTACCGCTCATTAAGAAGTTTTTACTAAAGAAG
GTATTAAGTTTAGACAAAATATATAATATCTGATGAATTGATCGATCCTT
TTGCTTATCACAATACTGCTCATTAAGAAGTTATTAAGTTCAGACAAAAT
GTATCACCCACATTTCTCTTACTGCATCTATTCATTTCTTAATCCGTGTT
TATCCCAGCAACCATATAATAAGTTGAATATATTTTGTGTCTTTTGACAA
ACGTCTTCGTAATTTAATATAAGCAGCTCTAAAGCAGATCCTGACTGTTA
CGTATACACTCTAAAGGCCATTGCTCCGAAAGAGAATTTGTCCAGGCTGA
TGGACCGCTTTGACAATTTCATCCAAATTTTAATATTTAATTAATATTAT
ATTTATCGCATTAAAACGCACTTTTTGTCTATTTTTGATAAATGTAGGAT
TCTTTAGATAAACCCCTCTAAAACGCACTCTCGTTTGCCATCGTTTGTAA
GCAATAAACAACACAGTTGCTGCATCCCTTTAAAGCAAAGCGTGGTGTGT
ACATAATGGATGATCTCTCATGAGATTAGATTTAATACCCAACAGCTGAG
CATCATCGATTCTTCATGTGGTCCTAAATCTTCTCCTTGAAGTGAATTTC
TTAGCGGTATCAATTGAAATTGAAGAGGCTAACAAAAATGTTGTCAAGAT
ATAAATCGTAAAAGTGATTACGTACGGAGAATGAGGCATGTTCGCAAAGC
GAAAGGAATTCTATAGACTAGGATTATATAGAGACACGGAATGTTGCCTA
ACTGTAACAAACCGAACTTCGCGTTATCTTTTCAGTCGGCGAAGAAGATT
TGGTACATGATACTTCAAACTCGAGATATCGCATTTTGAAGTTGTTCCTA
AACCCATGACGTCATTAGGTCCCTTTACCCCGTAATGTTGTCAACGGTCA
ATTCGCAAATTTTGGATTTTTTGAAGTCAAAGGGTACCTTGAGCCCCAAA
GGTCCCAAAAAAACAAAAATGTTAATTATTTTCACGGGAAAGCGGGTTTT
GAATTTTGCAAAGATTGATACTGCAACGANATTTTCACGGGAAAGCGAAT
TTTGCAAAGATTGATACTGCAACGACTTCTTCTTAAAAAACGCTAATTTT
CACGAAATTCTCAAAGTTGAAATGTTCCAAGGGCAAGAGAAAGGCCTAAT
TTTGTTTAATACACTGAGCATTATTTTTACAAGATAACAGATAAAGATAC
TTCTCAACCAATAAGATTATTCCTATTATTCCCTTCGAGAGCCAAACACA
AACACACGATCAATCTCAGCTCTAACTTAACGTATATACTTTATTGCAGG
AGAATGATTACAATTTCGATTATTACAATGATGGTGGAGATAAGTATGGA
GATGACGAGGATGGTGAAGAAGGACCTGTTTATTGATGGAAGGGTTGACT
GGTGTCAGTTCTGGTGGTTCTACTGGAGAGATCGATCGTTCATAATGAAG
TAGAAATAAAGGTCAGCTCAGGAGAGGTTATGCATATCATTGAAATCGTG
AATCTTTTGAATTTGCGATTTGAGAAATACTCGAGAAATAATTGTATTGG
AGAAATGGAGGAAGTCTTGATTTCATGATAATGATCTGTGCATATCATGT
GTGTTATTGTTATTCTGACAAAATGAGATCTTATTAAAATAACAAACGTC
CAAACGTCGACTTTGGGTAATTCGGAGCGTATGCAAAATCCACAATTCAT
ACAATGGGATGGTTTATTTCGGTGTAATTGGATACGATGATTGAGACATA
AAATTCAAGGCTGGAACATTTAAGTTGGGAATTATTTGATATATTTCCTT
CAACAGTGAATGGTCTTGTACTGCAGTTGTTACTTGCTTTCGAAAATATC
TTGTTTTTGTTAATTTTTGTAAATAATATCGGGGAGCATAAAAACTATGA
ATAAATCGTGGAAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016402XLOC_016402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028892-exon-sc0000714-1575043694:110103..110211TCONS_00028892-exon-sc0000714-1575043694:110103..110211Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1575043694:109817..109888TCONS_00028892-exon-sc0000714-1575043694:109817..109888Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1575043694:109407..109469TCONS_00028892-exon-sc0000714-1575043694:109407..109469Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1575043694:108924..109019TCONS_00028892-exon-sc0000714-1575043694:108924..109019Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1575043694:102795..103412TCONS_00028892-exon-sc0000714-1575043694:102795..103412Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1510915933:110103..110211TCONS_00028892-exon-sc0000714-1510915933:110103..110211Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1510915933:109817..109888TCONS_00028892-exon-sc0000714-1510915933:109817..109888Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1510915933:109407..109469TCONS_00028892-exon-sc0000714-1510915933:109407..109469Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1510915933:108924..109019TCONS_00028892-exon-sc0000714-1510915933:108924..109019Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1510915933:102795..103412TCONS_00028892-exon-sc0000714-1510915933:102795..103412Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1491911889:110103..110211TCONS_00028892-exon-sc0000714-1491911889:110103..110211Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1491911889:109817..109888TCONS_00028892-exon-sc0000714-1491911889:109817..109888Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1491911889:109407..109469TCONS_00028892-exon-sc0000714-1491911889:109407..109469Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1491911889:108924..109019TCONS_00028892-exon-sc0000714-1491911889:108924..109019Clytia hemisphaericaexon
TCONS_00028892-exon-sc0000714-1491911889:102795..103412TCONS_00028892-exon-sc0000714-1491911889:102795..103412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:102795..110211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.9401	8.42415	4.49809	4.59157	4.94169	5.36876e-09	0	1.76225	0.678986	0	2.21385	2.27697	1.11816	1.13517e-09	0.439309	0	0	0.280721	2.18336	0	3.02654	1.8471	3.8741	3.42603	0	0.156985	0.173897	2.11574	0.596586	2.18345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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