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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028786 ID=TCONS_00028786|Name=TCONS_00028786|organism=Clytia hemisphaerica|type=transcript|length=2216bpRun BLAST on NCBI protein sequence of TCONS_00028786-protein >TCONS_00028786-protein ID=TCONS_00028786-protein|Name=TCONS_00028786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MDRGGSAAEQKLAEKLVILNNRGLGMLTRIYNIKKACQDPKSRPSFLNDKRun BLAST on NCBI transcript from alignment at sc0000704:82767..96538+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028786 ID=TCONS_00028786|Name=TCONS_00028786|organism=Clytia hemisphaerica|type=transcript|length=13772bp|location=Sequence derived from alignment at sc0000704:82767..96538+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000704:82767..96538+ >TCONS_00028786 ID=TCONS_00028786|Name=TCONS_00028786|organism=Clytia hemisphaerica|type=CDS|length=18642bp|location=Sequence derived from alignment at sc0000704:82767..96538+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028786 vs. Swiss-Prot (Human)
Match: NCKP1 (Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1 PE=1 SV=1) HSP 1 Score: 483.797 bits (1244), Expect = 4.303e-155 Identity = 226/463 (48.81%), Postives = 325/463 (70.19%), Query Frame = 3
Query: 105 AEQKLAEKLVILNNRGLGMLTRIYNIKKACQDPKSRPSFLNDKSLEQALKIIVRKFPVMENSKASHMQPVMQMH-MDVVKGLSNYYFTFVDVMIFKDHASELLTSIDASFVHFDISLNFELTKAYFDLITTYACLFVLISKVDDRKAVLSLFNHAHEMQKGHGESNFPRLGQLIIDYEVPFKKLSEEFTPHAQRVGIALSSLNLLYKRRHLGGEQMRQAQILSLTSMPQQMLSPALSETVPCEYLSMETMTKWILFAYTLCPSQITAVSNAGEVWKMCLQDGFCMTLFRDEVLYIHKELQTLFESIKGQNKRTKEVQDCLAHSLQTSANFHRERRKYLITAMDEMIAILSDQPGLLGPKVLVALLGMSHARDEIYWLLRHKYHPPPKGKKIAQDDYEDERLPKLLYCVLELQELFKKYSKVIQRYFIQYLSGFDVALLKTIIQVTFYVNKKSDGLVASASLKT 1490
++QKLAEKL ILN+RG+GMLTR+YNIKKAC DPK++PS+L DK+LE A+K IVRKFP +E + +Q +++K L+ YYFTFVDVM FKDH ELL +ID V FDI++NF+LTK Y DLI TY L +L+S++++RKA++ L+N+AHEM G + +PRLGQ+I+DYE P KK+ EEF PH++ + AL SL ++Y RR+L +Q R AQ+LSL S P ML+PA S+T+PCEYLS++ M KWI+F + LC + + A +WK+ LQ C++LFRDEV +IHK + LF +I+G NKR ++++C ++ + + HRERRK+L +A+ E+ +LSDQPGLLGPK L + +S ARDEI WLLRH + P K + DD+ D+ + +L++ + EL+ +KY V+QRY++QYLSGFD +L ++Q V + + ++ S+ + T
Sbjct: 9 SQQKLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRNNNQQLAQLQKEKSEILKNLALYYFTFVDVMEFKDHVCELLNTIDVCQVFFDITVNFDLTKNYLDLIITYTTLMILLSRIEERKAIIGLYNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISAPSTMLNPAQSDTMPCEYLSLDAMEKWIIFGFILCHGILNTDATALNLWKLALQSSSCLSLFRDEVFHIHKAAEDLFVNIRGYNKRINDIRECKEAAVSHAGSMHRERRKFLRSALKELATVLSDQPGLLGPKALFVFMALSFARDEIIWLLRHADNMPKK----SADDFIDKHIAELIFYMEELRAHVRKYGPVMQRYYVQYLSGFDAVVLNELVQ-NLSVCPEDESIIMSSFVNT 466 The following BLAST results are available for this feature:
BLAST of TCONS_00028786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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