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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028719 ID=TCONS_00028719|Name=TCONS_00028719|organism=Clytia hemisphaerica|type=transcript|length=2174bpRun BLAST on NCBI protein sequence of TCONS_00028719-protein >TCONS_00028719-protein ID=TCONS_00028719-protein|Name=TCONS_00028719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp IYDFLRIIHNNVLLKFWLVAFFVYLGIMKKDKESKKSKANGELVLDEITGRun BLAST on NCBI transcript from alignment at sc0000700:61442..78050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028719 ID=TCONS_00028719|Name=TCONS_00028719|organism=Clytia hemisphaerica|type=transcript|length=16609bp|location=Sequence derived from alignment at sc0000700:61442..78050+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000700:61442..78050+ >TCONS_00028719 ID=TCONS_00028719|Name=TCONS_00028719|organism=Clytia hemisphaerica|type=CDS|length=21408bp|location=Sequence derived from alignment at sc0000700:61442..78050+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028719 vs. Swiss-Prot (Human)
Match: OSBP1 (Oxysterol-binding protein 1 OS=Homo sapiens GN=OSBP PE=1 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 4.994e-96 Identity = 184/428 (42.99%), Postives = 251/428 (58.64%), Query Frame = 2
Query: 143 ITGDKTDLRLLKE--QGITYPKSERKCLPSARDKYHFSLISFLRTTIGKDLTKVPMPVFFNEPLSFLQRLTEDLEYANLLNKAADCECPVERLVYVSAFASSNYANVPGRFWKPFNPLLGETFEYHN-QEHGYSVIAEQVSHHPPISAIHVES-DKWIFWQEYKLDTRFRGVYVKVCPTGDVHLKFKSNDCHYSWKKPNTSIHNIVFGTLWVDHEGSVEIESHQTKESAVVHFRNYKKVSKDYL-KLTGSVTDKSGDVVYHLEGGW---MEGLKAKPCEGTN------------RREIDMWTATPKPDDTAKYFGLTEFAMHLNEMNEDINCPTDSRLRPDQRLLEEGNIDEAGAQKYRLEEKQRAARKKRENQRQSWT----------PRWFRLVTDPDTGSSSHVYNGGYWKAKVEKDFSACPDIY 1336
I+G +D+ L ++ + K E++ + Y +L S ++ IGK+L+K+PMPV FNEPLS LQRLTEDLEY LL++AA CE +E+L YV+AF S+Y+ R KPFNPLLGETFE +E+GY + EQVSHHPP +A H ES + W QE K+ ++FRG Y+ + P G +H F + HY+WKK T++HNI+ G LW+D G ++I +H+T + + F Y S+D K+TG VTD SG V + L G W ME K +P G N + +W P P + + +E A+ LN E PTDSRLRPDQRL+E G DEA A+K RLEEKQR +RKKRE + T WF DP T +H+Y G YW+ K ++D+S+CPDI+
Sbjct: 381 ISGASSDISLDEQYKHQLEETKKEKRTRIPYKPNYSLNLWSIMKNCIGKELSKIPMPVNFNEPLSMLQRLTEDLEYHELLDRAAKCENSLEQLCYVAAFTVSSYSTTVFRTSKPFNPLLGETFELDRLEENGYRSLCEQVSHHPPAAAHHAESKNGWTLRQEIKITSKFRGKYLSIMPLGTIHCIFHATGHHYTWKKVTTTVHNIIVGKLWIDQSGEIDIVNHKTGDKCNLKFVPYSYFSRDVARKVTGEVTDPSGKVHFALLGTWDEKMECFKVQPVIGENGGDARQRGHEAEESRVMLWKRNPLPKNAENMYYFSELALTLNAW-ESGTAPTDSRLRPDQRLMENGRWDEANAEKQRLEEKQRLSRKKREAEAMKATEDGTPYDPYKALWFERKKDPVTKELTHIYRGEYWECKEKQDWSSCPDIF 807 The following BLAST results are available for this feature:
BLAST of TCONS_00028719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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