TCONS_00028605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028605
Unique NameTCONS_00028605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028605 ID=TCONS_00028605|Name=TCONS_00028605|organism=Clytia hemisphaerica|type=transcript|length=790bp
ttGCATTTGGCGCTTTGGTTTGACAATGTGACAAAAGACAGACACTTAAG
TCAATCTTTGAGGCAGGCAAGTATAACAGATATGGTTGTCGATGATAAGT
TTGTTAGGATTTGCGCCAGTGGCAACAAAGATGGCGTCATAGAAATGATC
GAAAATGAAAGTGAGAATAACAATGTAAATGCGAAGATCTTGCATGGGAA
ATCTCCTATAGAGGTAGCAACATGTTTTGGACACATTGGTGTAGTAGAAG
AGTTGATCAAAAATGGTGTGGAAGTTCAGCAGACATCTCAATCAGGGTAT
ACACTTCTTCATTGGGCAGCATGTTGGGGTCGCCTTGAACTGGTGAAGTT
CTTTGTTGAATCCAATGTtaacattttcttgaaaaacaaCAATGATGAAA
CAGCAACAGAAATGGCTGAACGTTACGAAAAAATGGATTGTGTTGCATTC
TTGAAAAAAGCAGGTATATATTGCGATTAGGAAAAACTTATTTATTCGTG
TTATTAGCTATAATCTAGGTCAtataaaaacacccctgtctcacagcccc
gatggaacttttttctcagTGGGACGTATGTGACCACTTCCCAAATTTTC
TCATCTGTCAAAACAATttggaaactttcaaaaacgaAATAACTATTTCC
AGAcgttttattgacaaaaattcaacaaaaatattttgcgattCGTTAAA
AACTATGAACTGGGAGCTTTTGACTGTAACCAAACATGCAGAATATTCTT
ATaatgttttcaaagaaatttttacaagGTGCTACGACAa
Run BLAST on NCBI

protein sequence of TCONS_00028605-protein

>TCONS_00028605-protein ID=TCONS_00028605-protein|Name=TCONS_00028605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
LHLALWFDNVTKDRHLSQSLRQASITDMVVDDKFVRICASGNKDGVIEMI
ENESENNNVNAKILHGKSPIEVATCFGHIGVVEELIKNGVEVQQTSQSGY
TLLHWAACWGRLELVKFFVESNVNIFLKNNNDETATEMAERYEKMDCVAF
LKKAGIYCD
Run BLAST on NCBI

transcript from alignment at sc0000693:177410..178714+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028605 ID=TCONS_00028605|Name=TCONS_00028605|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at sc0000693:177410..178714+ (Clytia hemisphaerica)
ttGCATTTGGCGCTTTGGTTTGACAATGTGACAAAAGACAGACACTTAAG
TCAATCTTTGAGGCAGGCAAGTATAACAGGTAAAATAAAAGGCTGTTCAA
AGTTAAAAACTATCTAAAGAAATGATAATTTGTTTGTATTTCTGAATTTA
AGTTTTCAAATTGCTCAAAAGATATGGTTGTCGATGATAAGTTTGTTAGG
ATTTGCGCCAGTGGCAACAAAGATGGCGTCATAGAAATGATCGAAAATGA
AAGTGAGAATAACAATGTAAATGCGAAGATCTTGCATGGGAAATCTCCTA
TAGAGGTAGCAACATGTTTTGGACACATTGGTGTAGTAGAAGAGTTGATC
AAAAATGGTGTGGAAGTTCAGCAGACATCTCAATCAGGTATTTAAAggaa
agcaagaaacttcaatttcaatttaaaaagcCGATATTTTGAAACTGCGA
GACTAATATCTTCAAGATAaacgaccctgccgacgcaTCGGGCAGTCGTC
CGGGGTTTTGTCCGGTGCCAAAACCTCAGCCACACCGGAAACCTTTTGTC
CGGTGTTAgtctagttttaattttttgggaCTCAAGTCTGGTGTTCGTAA
AGTCTGGGTGCATCGGCAGGGCGTCAAGATAATAGGCTAAGTAAGGGCCA
TTAGGCTATTAGGTACCAGAGAGTAAATAGGTGAATCAATTATTATATCG
CTAAAGGGATGGTCACAATAAGAGAAGTTAAGGAAACTTTACTTGTTTTA
CTCccattttgcaaaatttaacttgtattttacaaattttcgtgatttta
tTTATCACAGGGTATACACTTCTTCATTGGGCAGCATGTTGGGGTCGCCT
TGAACTGGTGAAGTTCTTTGTTGAATCCAATGTtaacattttcttgaaaa
acaaCAATGATGAAACAGCAACAGAAATGGCTGAACGTTACGAAAAAATG
GATTGTGTTGCATTCTTGAAAAAAGCAGGTATATATTGCGATTAGGAAAA
ACTTATTTATTCGTGTTATTAGCTATAATCTAGGTCAtataaaaacaccc
ctgtctcacagccccgatggaacttttttctcagTGGGACGTATGTGACC
ACTTCCCAAATTTTCTCATCTGTCAAAACAATttggaaactttcaaaaac
gaAATAACTATTTCCAGAcgttttattgacaaaaattcaacaaaaatatt
ttgcgattCGTTAAAAACTATGAACTGGGAGCTTTTGACTGTAACCAAAC
ATGCAGAATATTCTTATaatgttttcaaagaaatttttacaagGTGCTAC
GACAa

Coding sequence (CDS) from alignment at sc0000693:177410..178714+

>TCONS_00028605 ID=TCONS_00028605|Name=TCONS_00028605|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000693:177410..178714+ (Clytia hemisphaerica)
ttGCATTTGGCGCTTTGGTTTGACAATGTGACAAAAGACAGACACTTAAG
TCAATCTTTGAGGCAGGCAAGTATAACAGATATGGTTGTCGATGATAAGT
TTGTTAGGATTTGCGCCAGTGGCAACAAAGATGGCGTCATAGAAATGATC
GAAAATGAAAGTGAGAATAACAATGTAAATGCGAAGATCTTGCATGGGAA
ATCTCCTATAGAGGTAGCAACATGTTTTGGACACATTGGTGTAGTAGAAG
AGTTGATCAAAAATGGTGTGGAAGTTCAGCAGACATCTCAATCAGGGTAT
ACACTTCTTCATTGGGCAGCATGTTGGGGTCGCCTTGAACTGGTGAAGTT
CTTTGTTGAATCCAATGTtaacattttcttgaaaaacaaCAATGATGAAA
CAGCAACAGAAATGGCTGAACGTTACGAAAAAATGGATTGTGTTGCATTC
TTGAAAAAAGCAGGTATATATTGCGATTAGttGCATTTGGCGCTTTGGTT
TGACAATGTGACAAAAGACAGACACTTAAGTCAATCTTTGAGGCAGGCAA
GTATAACAGATATGGTTGTCGATGATAAGTTTGTTAGGATTTGCGCCAGT
GGCAACAAAGATGGCGTCATAGAAATGATCGAAAATGAAAGTGAGAATAA
CAATGTAAATGCGAAGATCTTGCATGGGAAATCTCCTATAGAGGTAGCAA
CATGTTTTGGACACATTGGTGTAGTAGAAGAGTTGATCAAAAATGGTGTG
GAAGTTCAGCAGACATCTCAATCAGGGTATACACTTCTTCATTGGGCAGC
ATGTTGGGGTCGCCTTGAACTGGTGAAGTTCTTTGTTGAATCCAATGTta
acattttcttgaaaaacaaCAATGATGAAACAGCAACAGAAATGGCTGAA
CGTTACGAAAAAATGGATTGTGTTGCATTCTTGAAAAAAGCAGGTATATA
TTGCGATTAGttGCATTTGGCGCTTTGGTTTGACAATGTGACAAAAGACA
GACACTTAAGTCAATCTTTGAGGCAGGCAAGTATAACAGATATGGTTGTC
GATGATAAGTTTGTTAGGATTTGCGCCAGTGGCAACAAAGATGGCGTCAT
AGAAATGATCGAAAATGAAAGTGAGAATAACAATGTAAATGCGAAGATCT
TGCATGGGAAATCTCCTATAGAGGTAGCAACATGTTTTGGACACATTGGT
GTAGTAGAAGAGTTGATCAAAAATGGTGTGGAAGTTCAGCAGACATCTCA
ATCAGGGTATACACTTCTTCATTGGGCAGCATGTTGGGGTCGCCTTGAAC
TGGTGAAGTTCTTTGTTGAATCCAATGTtaacattttcttgaaaaacaaC
AATGATGAAACAGCAACAGAAATGGCTGAACGTTACGAAAAAATGGATTG
TGTTGCATTCTTGAAAAAAGCAGGTATATATTGCGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016224XLOC_016224Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028605-proteinTCONS_00028605-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028605-exon-sc0000693-1491911889:177410..177488TCONS_00028605-exon-sc0000693-1491911889:177410..177488Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1510915933:177410..177488TCONS_00028605-exon-sc0000693-1510915933:177410..177488Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1575043694:177410..177488TCONS_00028605-exon-sc0000693-1575043694:177410..177488Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1491911889:177581..177796TCONS_00028605-exon-sc0000693-1491911889:177581..177796Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1510915933:177581..177796TCONS_00028605-exon-sc0000693-1510915933:177581..177796Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1575043694:177581..177796TCONS_00028605-exon-sc0000693-1575043694:177581..177796Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1491911889:178220..178714TCONS_00028605-exon-sc0000693-1491911889:178220..178714Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1510915933:178220..178714TCONS_00028605-exon-sc0000693-1510915933:178220..178714Clytia hemisphaericaexon
TCONS_00028605-exon-sc0000693-1575043694:178220..178714TCONS_00028605-exon-sc0000693-1575043694:178220..178714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000693supercontigsc0000693:177410..178714 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.7283	39.0608	59.7898	63.6251	74.1086	65.332	36.172	38.3606	23.8408	28.8341	19.7296	18.8343	1.76905	3.45669	5.95782	4.21303	10.6578	9.6693	4.44898	4.68681	7.63801	7.05963	13.7118	12.1377	21.1743	17.7842	9.822	7.57165	6.2835	5.71645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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