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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028582 ID=TCONS_00028582|Name=TCONS_00028582|organism=Clytia hemisphaerica|type=transcript|length=488bp
TCTTCGATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATGTCAA
CTTCAGGACAAGGAAGTTAAGATGAATGAGCAGCAAGCATTATTAGAATC
GAAAATGTTGGAAGTGTTGACGCTACAACACGCTCTCAAACAGTCAACAA
AGGAGCGTCTTCGCCACGAGAAACAATATGCAGACACAATGGCCATCAAC
CATACAGATCAAAGCCCGAACACGCTTTCTCATCATTTAAACGGTAATGA
CTTGACCTCTGAAATCTCTTGACGTGCGGCGGGAGGGAGGTAGACGTTAT
TTTTGTAGCTATGTCTTGTTCTTTACTCGGTCTTAAAACTAGTGTGGTGG
AAAAACTTGATATGAAACTTACCTCCTTCGATCCatgctttttgtttttt
ccaaTATAAAGCTATTTAGTATCATTGAGATGGTAGTAACAATATTCGAG
CTTCTTGTTAGTATGTTTTGAAACGAAAAAGTGTCCGG Run BLAST on NCBI transcript from alignment at sc0000692:23274..25163+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028582 ID=TCONS_00028582|Name=TCONS_00028582|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0000692:23274..25163+ (Clytia hemisphaerica)
TCTTCGATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATGTCAA
CTTCAGGTAAGAATTATAACCGTCAAATATCACGATTGGTCACGTGGAAA
TAGTTCTTCTTTTTATTAGGGCAATTAGTTATGACTACCAAGAAGCAAAA
GAGCTCAACCGACTGTTGAGAAAATCTAGTTTAAGATCCCAGAATTTCct
gatttcaaagccccgaaaGGTCTATATTTGAAACTCTTGTTTGAGGCCAC
TAATTAAATAGTTCTTCTTTTATTGCTGGGCATTTTGCAtgcagtctgtt
cctctaaaggatcctgcattgtaatacgcatgcgtaatttgttgttcttt
tagaccacatgtagttaattcccgtgataaatgAAGGGGaatggtacagt
cactttcggtcggggttgtcgatggcgaaatatgtcgttttttatgagat
ttttcgttctttttgtctatttttagtaatgcaggattctttagataaat
gGTTCGCCCTGACTGTTGAGAAGATGTAGTTTCGTCTCCCAAGagttttc
agaaaagataatcaattttaaaCTCCATCTAGGCAGAGAAATGTAAAGGG
ATAGAAAAATAACTTCTCTGATTACCAAAAGTGATCGTTTCTGCCCCCAT
GATGTATTTTAGAACGTCAAACGTTGACCCTATGGTAATTTTACGATGTT
TCCCTCAGGATTGTAGTTGATTGCGACTAAAAATAATGTTGTTTTTCTCT
CAGGACAAGGAAGTTAAGATGAATGAGCAGCAAGCATTATTAGAATCGAA
AATGTTGGAAGTGTTGACGCTACAACACGCTCTCAAACAGTCAACAAAGG
TAATGACAATCAGTTATTTTCCATTAttaatacacgcttttctttataaa
aatggtataaatccatttcattatggatattcttaacttttttgggaaaa
tacaTCATTCTTAGCGGGAAATATTCCCGGAACGGGAAAGTGGAAAACTT
CCCGAAACGGCTAGATTTTCCTAATCAGGAAGATCGGATGTTTCCTGGTC
GGAAAAGTTGGCTTTGAGCACCCCGGAAATGGTAGTGAAAAATAAATAGC
TGACTTCTCTTGTAAAGGAGGGAAAATAAATAACATTCATCTTCCTGATT
TGACTTCTCGAATGGAGCACTAAAAATCGGTGGAAAATTCAAGATTGCAG
CCataaaaattgatcaaattagGAAGTTGTGTCCTTTTCAGGCAACACTA
CCTCCCCGTAAGGGAAATATTTCCCATTTGGGCGATACTTTTCATATCga
tatactcttaggttccaaataaacgaccCCCCCNCCCCCCccctggacct
tattaggacctgccatttattaatttttaagaatatgttcagcaggcccc
ttattttgctctaaaaagCCTGTTTTTAGCCTgcatttaccttatttttg
ggttttcagaagtacaatttccacctcccccgtttatttggagtAGTGTT
ACCGACTGTATGTTATGGCTCAAAATAATGTCATTTATCATTCCACTTTT
CTAGGAGCGTCTTCGCCACGAGAAACAATATGCAGACACAATGGCCATCA
ACCATACAGATCAAAGCCCGAACACGCTTTCTCATCATTTAAACGGTAAT
GACTTGACCTCTGAAATCTCTTGACGTGCGGCGGGAGGGAGGTAGACGTT
ATTTTTGTAGCTATGTCTTGTTCTTTACTCGGTCTTAAAACTAGTGTGGT
GGAAAAACTTGATATGAAACTTACCTCCTTCGATCCatgctttttgtttt
ttccaaTATAAAGCTATTTAGTATCATTGAGATGGTAGTAACAATATTCG
AGCTTCTTGTTAGTATGTTTTGAAACGAAAAAGTGTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028582-exon-sc0000692-1491911889:23274..23329 | TCONS_00028582-exon-sc0000692-1491911889:23274..23329 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1510915933:23274..23329 | TCONS_00028582-exon-sc0000692-1510915933:23274..23329 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1575043694:23274..23329 | TCONS_00028582-exon-sc0000692-1575043694:23274..23329 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1491911889:24027..24122 | TCONS_00028582-exon-sc0000692-1491911889:24027..24122 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1510915933:24027..24122 | TCONS_00028582-exon-sc0000692-1510915933:24027..24122 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1575043694:24027..24122 | TCONS_00028582-exon-sc0000692-1575043694:24027..24122 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1491911889:24828..25163 | TCONS_00028582-exon-sc0000692-1491911889:24828..25163 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1510915933:24828..25163 | TCONS_00028582-exon-sc0000692-1510915933:24828..25163 | Clytia hemisphaerica | exon |
| TCONS_00028582-exon-sc0000692-1575043694:24828..25163 | TCONS_00028582-exon-sc0000692-1575043694:24828..25163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000692 | supercontig | sc0000692:23274..25163 + |
Blast
The following BLAST results are available for this feature:
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