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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028547 ID=TCONS_00028547|Name=TCONS_00028547|organism=Clytia hemisphaerica|type=transcript|length=948bp
GCAGTTTCAAAAAAACCTTGTGTACTATAACTTCTGAAtaacatttttgt
aaacaaaataatttcgtTTGAGATAGATTATTCTGCAAAGTTTTTTTGTG
CATGAAAGTTATTTGACAAGGTGTTGAGATTTTCTCTATTAGGcaagtta
aattttttagataaaTCTTTAATTATAAGTGCAAGTTTATGCTAATCGGT
AACCAGTCAGTTAGCCATGGCCAGATATATTTTGGATTGTATTTCCATTA
TCCTGTTTAGCCTGAATGTCTTGGTTGTAAACTGTTTTTGATCTTTCTTC
TATTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGACCAAAAAATCTGT
AGCTTCACCCAACAATTGAATTAGCACTTTTTGTTATTTAATGCTAATAA
TTATAaagtatttatatttattttttattttagcacTAAAGTGATGTTGC
GTGTACATGGACATTgtttaaatttcaaggaaattaACCCTAAACTAAgA
GTTACAAATCCTTTTGTTTGCACAAGTGAAACCAACTGGTTAGCCGAGCT
ATAACTTGGAACCTTGACGTAAAGAAATTATCAAACGGCTGAACAAGACA
ACATTTTGGCTGGTGATGAATAAAGATTCAGACGCCAGCGACTTTAATAT
AAGCATAATGATCAAATGATTGATAAATATATACTGTATTGTGTCACAGA
CCCGTTGGTACTTCTACATACTGTAAAAATCAGACAAATTGTACCCGGTT
AGAGAACCCACCCGGTGATCTATAATGAAGGTTTTTTTAGCCTTGGGATG
ttgttaactttttttcttttaaaatcctaagaatatttttaatttcatct
tTTAACGGGTATTTTATCCATTTTCAGAGAAATTGGGTCTAAAatgttct
ttcattttaacaaACTATAACTATATAgctataactctctaacttcag Run BLAST on NCBI transcript from alignment at sc0000691:63859..66310+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028547 ID=TCONS_00028547|Name=TCONS_00028547|organism=Clytia hemisphaerica|type=transcript|length=2452bp|location=Sequence derived from alignment at sc0000691:63859..66310+ (Clytia hemisphaerica)
GCAGTTTCAAAAAAACCTTGTGTACTATAACTTCTGAAtaacatttttgt
aaacaaaataatttcgtTTGAGATAGATTATTCTGCAAAGTTTTTTTGTG
CATGAAAGTTATTTGACAAGGTGTTGAGATTTTCTCTATTAGGcaagtta
aattttttagataaaTCTTTAATTATAAGTGCAAGTTTATGCTAATCGGT
AACCAGTCAGTTAGCCATGGCCAGATATATTTTGGATTGTATTTCCATTA
TCCTGTTTAGCCTGAATGTCTTGGTTGTAAACTGTTTTTGATCTTTCTTC
TATTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGACCAAAAAATCTGT
AGCTTCACCCAACAATTGAATTAGCACTTTTTGTTATTTAATGCTAATAA
TTATAaagtatttatatttattttttattttagcacTAAAGTGATGTTGC
GTGTACATGGACATTgtttaaatttcaaggaaattaACCCTAAACTAAGT
AAGTCATTATTATGTCGCAACATGGTCTTACTCAGTATTTTgactctcaa
aattttattttacttccTCTCCAATGAAGAAAGTGTTCAGTAAAAGACTA
ctttaaaacaatagaaattctttCCCCGTTGGTTTTTTGATGGAAATGTT
CATCCCCACTGTGAGAAGAAGTTCCACCGGCGCTGcaagacaggggtgtt
attaataaaaacaaagcttgAGTTAAAAGAAGAGTTCAAGAGTTAAAATA
CCTGGACTTTttcatcagtgaaatatttttccctaaaatgtctatcaaaa
aaaaattttgaatcaccTCTAGATATGATTCTCAATAAGTTCGCTCAGTC
TGTAAATGTAACTTTTCAAATTGGTGGCCCCTCCCAAatgttttcatcaa
aagtttcaaaagacacccctgtctcactgcctCTTTGGAACTTTTGCTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aatcccaatgggaatagaaattatattgttccaaggttaaaagatccagt
ggggatggtttttgaatgcaacttttaaacattgaatttagaatggggat
gaaatgaaagtcaatttttataGTGGACTGGAATCTCAGGGTAATTTTCC
ATCGGGGACGAAGAGAATTTGACCTATTATTAGAACACATACCGTCTGGT
CCCTCAAGTGTAAGGTTTTACTTATGATGTAAAGTACGATTTAGCTGGTG
AAGAACTTGTGATGTCACTTAAACTataagattttgtttttgttcctttt
taggAGTTACAAATCCTTTTGTTTGCACAAGTGAAACCAACTGGTTAGCC
GAGGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtttgtttcacttttcaaagatattt
aacCATATGAACACTTGAGCTGATTTGTAACTCTcaaatagcgctccgca
acgcatacgtcataattattacttttaaatgttttacatttgtacgagtt
gcaatgcTGCTCAATTAAAGATGCATGCAAGTTCTTacatatcttttgtc
aaatgatgcaattaatGTGCAAAGAAACGCAAAAGGATTGTagctcgtac
aaacacatcaagAAGAGTAATTATTATGTCAAAAGTGTGCGCTATGTAAA
CCTTAAAAGATGCTTACCCTATTTCCCCGCCTATTTCCCATTCAAGCTac
caaattgacaaaattttggaactccttctgaaaattttattttgtctttc
agCTATAACTTGGAACCTTGACGTAAAGAAATTATCAAACGGCTGAACAA
GACAACATTTTGGCTGGTGATGAATAAAGATTCAGACGCCAGCGACTTTA
ATATAAGCATAATGATCAAATGATTGATAAATATATACTGTATTGTGTCA
CAGACCCGTTGGTACTTCTACATACTGTAAAAATCAGACAAATTGTACCC
GGTTAGAGAACCCACCCGGTGATCTATAATGAAGGTTTTTTTAGCCTTGG
GATGttgttaactttttttcttttaaaatcctaagaatatttttaatttc
atcttTTAACGGGTATTTTATCCATTTTCAGAGAAATTGGGTCTAAAatg
ttctttcattttaacaaACTATAACTATATAgctataactctctaacttc
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028547-exon-sc0000691-1491911889:63859..64356 | TCONS_00028547-exon-sc0000691-1491911889:63859..64356 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1510915933:63859..64356 | TCONS_00028547-exon-sc0000691-1510915933:63859..64356 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1575043694:63859..64356 | TCONS_00028547-exon-sc0000691-1575043694:63859..64356 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1491911889:65262..65311 | TCONS_00028547-exon-sc0000691-1491911889:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1510915933:65262..65311 | TCONS_00028547-exon-sc0000691-1510915933:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1575043694:65262..65311 | TCONS_00028547-exon-sc0000691-1575043694:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1491911889:65911..66310 | TCONS_00028547-exon-sc0000691-1491911889:65911..66310 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1510915933:65911..66310 | TCONS_00028547-exon-sc0000691-1510915933:65911..66310 | Clytia hemisphaerica | exon |
| TCONS_00028547-exon-sc0000691-1575043694:65911..66310 | TCONS_00028547-exon-sc0000691-1575043694:65911..66310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:63859..66310 + |
Blast
The following BLAST results are available for this feature:
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