TCONS_00028540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028540
Unique NameTCONS_00028540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028540 ID=TCONS_00028540|Name=TCONS_00028540|organism=Clytia hemisphaerica|type=transcript|length=2287bp
GTGtgtataaagaaaagaaaatttcatgatACAAACTTTAAGACACCGAT
AGAGACACATAAGTTACTTTCAATTTACCTTTTCATGAAACTTTTTAAGC
TATTGGGGGATAATTGATCGCTTGTTTTAAATTGATGGGAATTTTCTGAG
ATAGCGTAAGAGAGGTGCCGCTGGGGGCCTCATCAATTTCTAGATCAATT
GAGTAAAATAATATGAAGAATgattttcaatattattataACTTGTATAC
CTATTaacaaatttggctaaaatacCAAAGTGATATTTTGTTTAAGTTTT
CTAACTTTCTTTAATATTTCGATAGTCttgaattattattatttggaGGA
CTTCCAGTATCTGGCATCAAGAATTCGTCTTTTTTGCCTGGTGAAGGACA
AGGTGAACTTTTGGAAAGTGTTCTCTGACTTCTTCTACTCATAAAGGAGG
AAAATCTACGTCTTGAGACACTCCCTGAGTAAGGTGCATCTGAGTAAAAT
ACTGAATCACGAAAGTCAATTTTCTTACAGAAGTTCAATAAGAATGATCG
AATTTTCTTGTCACGGTAAATAAAAATAACAGAATTGATTCCGCTATTCA
TGACAAGCGGGATATAGGACCAAGGTATCAGGTAATGATAATATATTTTC
CGTTCGTCACTCGTGAAGAGGAAGCCTGCGGTCAACGCAAACGATATAAC
GACAGGTAACCAACAAAATATCAGAATGATGGATAAGATGAATATTGTTT
TTACAGCTTTCCGATGATATACACGACATTTTTCACGATTTATATTATGA
TTGATTGTCATCTTACGATGTACGCTTAATGTGAGCAAAAGCCGTCCATT
CAAAACCAGGATTGATAATAAAGCTGTAATTACAAAcaaggaacaaaaca
aaatgaatcCACCGTGTCTTACTGGATGCATTGTTTGAGAAGCACGAAAA
GCGTACCATAGTCCACAGGAAGCTGCTATTAGCACTTCAACCAAAACAAC
ATGTTTCCAAAATTGTTTTTGTAATCTACATATCGTTGAATttgtgtatt
ttacagtaCAGTATCGAGCAAATGAGACATGAAGTAGAAATAGAATTGTT
AACGCGGTTGGACTCGAGTTAAAGAACGCTTGTAAGGCGATAAGTCGGCA
TGATGCTTTTGATGCTTTTACAGCGGTAATTGCTTGGATAGGGACGGTGA
GTAAACCAGTCGTTAAGTCAGAACAGGACAGACACACAAATAACTTCTTG
GATAATGTCATGCGCTTGTTAACATTTAGAAGACCAAGAATCATACAGAC
ATTTGTAGTGATAATGACAAGGAATATGATTGCCATAAGAACAGTATGGA
AGACTAACAGATCTGGTGATAAAGTGTTGGATGTGAAGATATGGTAACAT
TGTTCTGTTGGTGATAGATGAGGTTCTGGTGGTGATATTACACTTTCCAA
CTCTGCTGCAATTTCTCCATATGTGATGTTGTTCATCATGCCTTCaaatt
ttctcttttgatcATTGTctagaaaaatatattgaaaaggtttAATTATG
TATGACCTGGTGGTCCNTGATATACACGACATTTTTCACGATTTATATTA
TGATTGATTGTCATCTTACGATGTACGCTTAATGTGAGCAAAAGCCGTCC
ATTCAAAACTAGGATTGATAACAAAGCTGTAATCACGAAcaaggaacaaa
acaaaataaatccaCCGTGTCTCACTGGATGCATTGTTTGGGAAGCACGA
AAAGCGTACCATAGTCCACAGGAAGCTGCTATTAGCACTTCAACCAAAAC
AACATGTTTCCAAAATTGTTTTTGTAATCTACATATCGTTgaatttgtgt
attttacagtaCAGTATCGAGCAAATGAGACATGAAGTAGAAATAGAATT
GTTAACGCGGTTGGACTCGAGTTAAAGAACGCTTGTAAGGCGATAAGTCG
GCATGATGCTTTTGATGCTTTTACAGCGGTAATTGCTTGGATAGGGACGG
TGAGTAAACCAGTCGTTAAGTCAGAACAGGACAGACACACAAATAACTTC
TTGGATAATGTCATGCGCTTGTTAACATTTAGAAGACCAAGAATCATACA
GACATTTGTAGTGATAATGACAAGGAATATGATTGCCATAAGAACAGTAT
GGAAGACTAACAGATCTGGTGATAAAGTGTTGGATGTGAAGATATGGTAG
CATTTCTCTGTTGGTGATTGTAGATGAGGTTCTGGTGGTGATATTACACT
TTCCAACTCTGCTGCAATTTCTCCATATGTGATGTTG
Run BLAST on NCBI

protein sequence of TCONS_00028540-protein

>TCONS_00028540-protein ID=TCONS_00028540-protein|Name=TCONS_00028540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MSCISXTTRSYIIKPFQYIFLDNDQKRKFEGMMNNITYGEIAAELESVIS
PPEPHLSPTEQCYHIFTSNTLSPDLLVFHTVLMAIIFLVIITTNVCMILG
LLNVNKRMTLSKKLFVCLSCSDLTTGLLTVPIQAITAVKASKASCRLIAL
QAFFNSSPTALTILFLLHVSFARYCTVKYTNSTICRLQKQFWKHVVLVEV
LIAASCGLWYAFRASQTMHPVRHGGFILFCSLFVITALLSILVLNGRLLL
TLSVHRKMTINHNINREKCRVYHRKAVKTIFILSIILIFCWLPVVISFAL
TAGFLFTSDERKIYYHYLIPWSYIPLVMNSGINSVIFIYRDKKIRSFLLN
FCKKIDFRDSVFYSDAPYSGSVSRRRFSSFMSRRSQRTLSKSSPCPSPGK
KDEFLMPDTGSPPNNNNSRLSKY
Run BLAST on NCBI

transcript from alignment at sc0000690:94973..97259

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028540 ID=TCONS_00028540|Name=TCONS_00028540|organism=Clytia hemisphaerica|type=transcript|length=2287bp|location=Sequence derived from alignment at sc0000690:94973..97259 (Clytia hemisphaerica)
CAACATCACATATGGAGAAATTGCAGCAGAGTTGGAAAGTGTAATATCAC
CACCAGAACCTCATCTACAATCACCAACAGAGAAATGCTACCATATCTTC
ACATCCAACACTTTATCACCAGATCTGTTAGTCTTCCATACTGTTCTTAT
GGCAATCATATTCCTTGTCATTATCACTACAAATGTCTGTATGATTCTTG
GTCTTCTAAATGTTAACAAGCGCATGACATTATCCAAGAAGTTATTTGTG
TGTCTGTCCTGTTCTGACTTAACGACTGGTTTACTCACCGTCCCTATCCA
AGCAATTACCGCTGTAAAAGCATCAAAAGCATCATGCCGACTTATCGCCT
TACAAGCGTTCTTTAACTCGAGTCCAACCGCGTTAACAATTCTATTTCTA
CTTCATGTCTCATTTGCTCGATACTGtactgtaaaatacacaaattcAAC
GATATGTAGATTACAAAAACAATTTTGGAAACATGTTGTTTTGGTTGAAG
TGCTAATAGCAGCTTCCTGTGGACTATGGTACGCTTTTCGTGCTTCCCAA
ACAATGCATCCAGTGAGACACGGtggatttattttgttttgttccttgTT
CGTGATTACAGCTTTGTTATCAATCCTAGTTTTGAATGGACGGCTTTTGC
TCACATTAAGCGTACATCGTAAGATGACAATCAATCATAATATAAATCGT
GAAAAATGTCGTGTATATCANGGACCACCAGGTCATACATAATTaaacct
tttcaatatatttttctagACAATgatcaaaagagaaaatttGAAGGCAT
GATGAACAACATCACATATGGAGAAATTGCAGCAGAGTTGGAAAGTGTAA
TATCACCACCAGAACCTCATCTATCACCAACAGAACAATGTTACCATATC
TTCACATCCAACACTTTATCACCAGATCTGTTAGTCTTCCATACTGTTCT
TATGGCAATCATATTCCTTGTCATTATCACTACAAATGTCTGTATGATTC
TTGGTCTTCTAAATGTTAACAAGCGCATGACATTATCCAAGAAGTTATTT
GTGTGTCTGTCCTGTTCTGACTTAACGACTGGTTTACTCACCGTCCCTAT
CCAAGCAATTACCGCTGTAAAAGCATCAAAAGCATCATGCCGACTTATCG
CCTTACAAGCGTTCTTTAACTCGAGTCCAACCGCGTTAACAATTCTATTT
CTACTTCATGTCTCATTTGCTCGATACTGtactgtaaaatacacaaATTC
AACGATATGTAGATTACAAAAACAATTTTGGAAACATGTTGTTTTGGTTG
AAGTGCTAATAGCAGCTTCCTGTGGACTATGGTACGCTTTTCGTGCTTCT
CAAACAATGCATCCAGTAAGACACGGTGgattcattttgttttgttcctt
gTTTGTAATTACAGCTTTATTATCAATCCTGGTTTTGAATGGACGGCTTT
TGCTCACATTAAGCGTACATCGTAAGATGACAATCAATCATAATATAAAT
CGTGAAAAATGTCGTGTATATCATCGGAAAGCTGTAAAAACAATATTCAT
CTTATCCATCATTCTGATATTTTGTTGGTTACCTGTCGTTATATCGTTTG
CGTTGACCGCAGGCTTCCTCTTCACGAGTGACGAACGGAAAATATATTAT
CATTACCTGATACCTTGGTCCTATATCCCGCTTGTCATGAATAGCGGAAT
CAATTCTGTTATTTTTATTTACCGTGACAAGAAAATTCGATCATTCTTAT
TGAACTTCTGTAAGAAAATTGACTTTCGTGATTCAGTATTTTACTCAGAT
GCACCTTACTCAGGGAGTGTCTCAAGACGTAGATTTTCCTCCTTTATGAG
TAGAAGAAGTCAGAGAACACTTTCCAAAAGTTCACCTTGTCCTTCACCAG
GCAAAAAAGACGAATTCTTGATGCCAGATACTGGAAGTCCtccaaataat
aataattcaaGACTATCGAAATATTAAAGAAAGTTAGAAAACTTAAACAA
AATATCACTTTGgtattttagccaaatttgttAATAGGTATACAAGTtat
aataatattgaaaatcATTCTTCATATTATTTTACTCAATTGATCTAGAA
ATTGATGAGGCCCCCAGCGGCACCTCTCTTACGCTATCTCAGAAAATTCC
CATCAATTTAAAACAAGCGATCAATTATCCCCCAATAGCTTAAAAAGTTT
CATGAAAAGGTAAATTGAAAGTAACTTATGTGTCTCTATCGGTGTCTTAA
AGTTTGTatcatgaaattttcttttctttatacaCAC

Coding sequence (CDS) from alignment at sc0000690:94973..97259

>TCONS_00028540 ID=TCONS_00028540|Name=TCONS_00028540|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000690:94973..97259 (Clytia hemisphaerica)
ATGTCGTGTATATCANGGACCACCAGGTCATACATAATTaaaccttttca
atatatttttctagACAATgatcaaaagagaaaatttGAAGGCATGATGA
ACAACATCACATATGGAGAAATTGCAGCAGAGTTGGAAAGTGTAATATCA
CCACCAGAACCTCATCTATCACCAACAGAACAATGTTACCATATCTTCAC
ATCCAACACTTTATCACCAGATCTGTTAGTCTTCCATACTGTTCTTATGG
CAATCATATTCCTTGTCATTATCACTACAAATGTCTGTATGATTCTTGGT
CTTCTAAATGTTAACAAGCGCATGACATTATCCAAGAAGTTATTTGTGTG
TCTGTCCTGTTCTGACTTAACGACTGGTTTACTCACCGTCCCTATCCAAG
CAATTACCGCTGTAAAAGCATCAAAAGCATCATGCCGACTTATCGCCTTA
CAAGCGTTCTTTAACTCGAGTCCAACCGCGTTAACAATTCTATTTCTACT
TCATGTCTCATTTGCTCGATACTGtactgtaaaatacacaaATTCAACGA
TATGTAGATTACAAAAACAATTTTGGAAACATGTTGTTTTGGTTGAAGTG
CTAATAGCAGCTTCCTGTGGACTATGGTACGCTTTTCGTGCTTCTCAAAC
AATGCATCCAGTAAGACACGGTGgattcattttgttttgttccttgTTTG
TAATTACAGCTTTATTATCAATCCTGGTTTTGAATGGACGGCTTTTGCTC
ACATTAAGCGTACATCGTAAGATGACAATCAATCATAATATAAATCGTGA
AAAATGTCGTGTATATCATCGGAAAGCTGTAAAAACAATATTCATCTTAT
CCATCATTCTGATATTTTGTTGGTTACCTGTCGTTATATCGTTTGCGTTG
ACCGCAGGCTTCCTCTTCACGAGTGACGAACGGAAAATATATTATCATTA
CCTGATACCTTGGTCCTATATCCCGCTTGTCATGAATAGCGGAATCAATT
CTGTTATTTTTATTTACCGTGACAAGAAAATTCGATCATTCTTATTGAAC
TTCTGTAAGAAAATTGACTTTCGTGATTCAGTATTTTACTCAGATGCACC
TTACTCAGGGAGTGTCTCAAGACGTAGATTTTCCTCCTTTATGAGTAGAA
GAAGTCAGAGAACACTTTCCAAAAGTTCACCTTGTCCTTCACCAGGCAAA
AAAGACGAATTCTTGATGCCAGATACTGGAAGTCCtccaaataataataa
ttcaaGACTATCGAAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016177XLOC_016177Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028540-proteinTCONS_00028540-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028540-exon-sc0000690-1491911889:94973..97259TCONS_00028540-exon-sc0000690-1491911889:94973..97259Clytia hemisphaericaexon
TCONS_00028540-exon-sc0000690-1510915933:94973..97259TCONS_00028540-exon-sc0000690-1510915933:94973..97259Clytia hemisphaericaexon
TCONS_00028540-exon-sc0000690-1575043694:94973..97259TCONS_00028540-exon-sc0000690-1575043694:94973..97259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:94973..97259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239022	0.316329	0.0966548	0.0756493	0.322335	0.0727753	1.317	0.986371	1.88471	3.63543	2.47351	2.4333	1.2036	1.79238	1.78381	1.29007	1.65335	2.35146	6.26141	3.00068	2.2945	2.43964	1.35072	1.61953	1.19149	1.16153	1.21735	1.07433	3.6952	3.147
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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