TCONS_00028538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028538
Unique NameTCONS_00028538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028538 ID=TCONS_00028538|Name=TCONS_00028538|organism=Clytia hemisphaerica|type=transcript|length=368bp
AATTATCAAGGAAACTTCTCATGAAGAGATAGAATATGTATCTCCCATAT
TCTGTACCCCAAAAACTGATGGTGGGATAAGATTGATATTGAATTTGAAA
AAATTAAACCAACATATAAAATTTCGTCACTTCAAAATGCAAACCATCAG
GGATGCTTTACTAATGATAAATGAAAATGATTTTCTGACATCCATAGATC
TTAAAGATGCATACTATAGTGTTCCTATTCATAAAGATTTCCAAAGTTAT
CTCAAATTTCAATTTAGAGGAAAATTGTTTAAATACACCTGTTATCCTAA
TGGCTTAGGTCCTTGTCCTAGAAAATTTACCAAACTAACTACTGTCCCCA
TGAGTGAGATAAGAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00028538-protein

>TCONS_00028538-protein ID=TCONS_00028538-protein|Name=TCONS_00028538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
IIKETSHEEIEYVSPIFCTPKTDGGIRLILNLKKLNQHIKFRHFKMQTIR
DALLMINENDFLTSIDLKDAYYSVPIHKDFQSYLKFQFRGKLFKYTCYPN
GLGPCPRKFTKLTTVPMSEIRK
Run BLAST on NCBI

transcript from alignment at sc0000690:3587..3954

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028538 ID=TCONS_00028538|Name=TCONS_00028538|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at sc0000690:3587..3954 (Clytia hemisphaerica)
GTTTTCTTATCTCACTCATGGGGACAGTAGTTAGTTTGGTAAATTTTCTA
GGACAAGGACCTAAGCCATTAGGATAACAGGTGTATTTAAACAATTTTCC
TCTAAATTGAAATTTGAGATAACTTTGGAAATCTTTATGAATAGGAACAC
TATAGTATGCATCTTTAAGATCTATGGATGTCAGAAAATCATTTTCATTT
ATCATTAGTAAAGCATCCCTGATGGTTTGCATTTTGAAGTGACGAAATTT
TATATGTTGGTTTAATTTTTTCAAATTCAATATCAATCTTATCCCACCAT
CAGTTTTTGGGGTACAGAATATGGGAGATACATATTCTATCTCTTCATGA
GAAGTTTCCTTGATAATT

Coding sequence (CDS) from alignment at sc0000690:3587..3954

>TCONS_00028538 ID=TCONS_00028538|Name=TCONS_00028538|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000690:3587..3954 (Clytia hemisphaerica)
TTTTCTTATCTCACTCATGGGGACAGTAGTTAGTTTGGTAAATTTTCTAG
GACAAGGACCTAAGCCATTAGGATAACAGGTGTATTTAAACAATTTTCCT
CTAAATTGAAATTTGAGATAACTTTGGAAATCTTTATGAATAGGAACACT
ATAGTATGCATCTTTAAGATCTATGGATGTCAGAAAATCATTTTCATTTA
TCATTAGTAAAGCATCCCTGATGGTTTGCATTTTGAAGTGACGAAATTTT
ATATGTTGGTTTAATTTTTTCAAATTCAATATCAATCTTATCCCACCATC
AGTTTTTGGGGTACAGAATATGGGAGATACATATTCTATCTCTTCATGAG
AAGTTTCCTTGATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016175XLOC_016175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028538-proteinTCONS_00028538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028538-exon-sc0000690-1491911889:3587..3954TCONS_00028538-exon-sc0000690-1491911889:3587..3954Clytia hemisphaericaexon
TCONS_00028538-exon-sc0000690-1510915933:3587..3954TCONS_00028538-exon-sc0000690-1510915933:3587..3954Clytia hemisphaericaexon
TCONS_00028538-exon-sc0000690-1575043694:3587..3954TCONS_00028538-exon-sc0000690-1575043694:3587..3954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:3587..3954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12383	1.30552	2.02112	3.21319	0.902712	0.713335	2.00809	1.34282	0.188028	0.698708	1.58243	0.297207	0.296794	0.616447	1.39371	2.17551	0.837516	1.54517	2.13473	1.98564	2.58882	3.47253	1.27918	0.465186	0	0.641419	1.52978	1.63262	2.72423	1.51394
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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