TCONS_00028531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028531
Unique NameTCONS_00028531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028531 ID=TCONS_00028531|Name=TCONS_00028531|organism=Clytia hemisphaerica|type=transcript|length=948bp
tctattttagCCTAACTAATAAAACATGGAGGATAACTCAGTTCCTGATA
ATGCAACTCTTTTACAAATGTTTGAAACCATGAAGTCTGAAATGTCGAAA
CTCAAACAAAACAACTCTCAACAAAGAATTAACCTCTCTCCCCCAGGTAC
GGCCGGAGGGGGATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAAG
ATTTTACAAAAAGAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGCA
ACAGAACAACACACCCTCAGAGCACACTCGACCAGATCCGCAACGACATC
TAAAGCGAAGTTACGTAAAGTCCCAATGGAACACATCGTCAGAAATGCTG
GATGGGCAAACGCTCGTACTTTTGCAAATCATTATGACAAAACTGTCATT
GAAGACATCAATCTCTTAGAAGCTTTAACAAATTGAATTAtattaaaaac
tttttgttgCTATATATATTAAAATTATTTGACTCAAATTGTTGTACTCA
GATTACACAATAGTCATTCtcttaaagaaaagaaaagttgaATTTATATC
GAAAAGAATCGATAATACTGTCTAAAATTCTTTACTCTGAATTCCGAAAA
ACTTAGGCACACTACGAAATCTCGCTTTATAGTCGGACATTAAGGgaata
atttatgcaataaaatTATCCCAAAACAAACGATACTTACCTGTAAGTTG
AAGTTTGTTGGGAGTTTTATTAATAAATTATTCCCAGATGGATGAGTATA
AAGTGCCCACCACTAACAACCCACCCATTTTATACTCATCCATCAAATGT
ACCAAACTTTTTCGGCTATGCTACGAACCCTGAAGTTAGCTGCGCGTTCT
ATCTCACTTTATACTCATCCATCTGGGAATAATTTATTAATAAAACTCCC
AACAAACTTCAACTTACAGGTAAGTATCGTTTGTTTTGGGATAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000690:824..5333-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028531 ID=TCONS_00028531|Name=TCONS_00028531|organism=Clytia hemisphaerica|type=transcript|length=4510bp|location=Sequence derived from alignment at sc0000690:824..5333- (Clytia hemisphaerica)
TCTATTTTAGCCTAACTAATAAAACATGGAGGATAACTCAGTTCCTGATA
ATGCAACTCTTTTACAAATGTTTGAAACCATGAAGTCTGAAATGTCGAAA
CTCAAACAAAACAACTCTCAACAAAGAATTAACCTCTCTCCCCCAGCAAG
TGATAATGATCTTGAAGATTTTGATTATGATTATGATGATGTAGAATTAT
ACGCATCACAAGATGAAATTGATTTAATAGACCCAGTTGAGGAAAATGGG
GGAGAGGAAGAAGAAGTAGAATATGAATCTACTGAACAACCTTCTTCTTT
AACTGTTGCTACTGCCACAGATGCAGCTACTGCAAGTACCAGCCCCAAAA
ATAAAAATGATGAAATTGGAGAGGATATATTTTCAGAAATTAAAGTAACT
AATTCGAGTGATTCTCAAGGAGAAAAAATTTCCGAAAGTTGGGCCAAAAT
TATTGATGATAGCTTTCATGGGCGAAAAGATAAAGATGATATTAAAAAAC
TAAGAGAAATGTTTCCAACACCTAAGAATTGTACGTTACCTACCCCAAAA
TTAAATATTGAAATTTGGCAACTTCTTAATGCTTTTCAAAAAAGATCTGA
TGTTTCATTGAAAATGATCCAAAGAAATATCATTGCCGGAACAAGCGGTA
TTATCGAGCTCGTCCAGGATGTCTTGAACAACAAAGCAGACAAAAAACAA
CTAGTACAAAAATCAACAGACATAATCGGTTTGCTAGGACATGCCTCAAA
TGAAATATCTTTGAAACGTAAACAATATATTAAAACTGCCTTGAAAGATG
AATATAAAGATTTGGTTTCCATTACAAACCAAGAAGACTCCAAATCAAAA
TCATCTGAAAAACTTTTTGGAGAAAACCTAAGTGAATGTATAAAAGATCT
TAAGCTGAGGAATAAACTTAAAGGCCCCACTACCTCAACACGTGGAAAAC
ACCGAGGTGGTTACAGTGGTAGATTCCAACCTTATAACAAGGACAATTCG
TCTTTTTTAGGGTACGGCCGGAGGGGGATGTCCTCCTCCACCCAATCAAG
CCAACCCAAACAAAGATTTTACAAAAAGAAAGGAAACTGAATGCCTCAGA
TGCATCAACAGAGCAACAGAACAACACACCCTCAGAGGTAAGCAATTTTC
TAAAACTTTGCTCTCATAAAGTAGAAAAATTTCAAGGTGGTAGACTTTCT
AATTACTCTAGCCAGTGGAAAACACTAACTAGTGATAAAAATATTTTGGA
TATGGTTACTTATGGGGACACTATAGAATTTGAGAATGAGGTTCAAAGTA
AACACTTTTGTCTAAACCAATATGATAATGAAGATGAGAGCTTAGTCCTC
TCTGAAGTGCAAAAAATGCAAAAAAGGGGAATTATCAAGGAAACTTCTCA
TGAAGAGATAGAATATGTATCTCCCATATTCTGTACCCCAAAAACTGATG
GTGGGATAAGATTGATATTGAATTTGAAAAAATTAAACCAACATATAAAA
TTTCGTCACTTCAAAATGCAAACCATCAGGGATGCTTTACTAATGATAAA
TGAAAATGATTTTCTGACATCCATAGATCTTAAAGATGCATACTATAGTG
TTCCTATTCATAAAGATTTCCAAAGTTATCTCAAATTTCAATTTAGAGGA
AAATTGTTTAAATACACCTGTTATCCTAATGGCTTAGGTCCTTGTCCTAG
AAAATTTACCAAACTAACTACTGTCCCCATGAGTGAGATAAGAAAACAGG
GTCACTCTATAGGTGGTTATATAGATGATTTCTTAATGGCTGAAGATTCA
TATCAGAGAGCCTTGAGAGGAACATTAGTGGCTGCAAAACTTTTTGACTT
TGCTGGGTTTGTAGTCCACCCAATTAAATCTCAGTTATTACCATCACAAA
GAATTGTTTTTTTGGGATTCCTTATTGACACAGTGACAATGACTTTAAGG
CTCACGGAAAAGCGCTCAAAAACTTTGAAAGACCACATTAACAAACTCTT
GACAATCAAAAAACCAACAATCAGATATGTTGCTAAGGTCATTGGTCATA
TTATTTCGGCACTTCCGGCTTCAAAATTTGGTGCATTACATTACAGAAAA
CTTGAAAAGGACAAAACTAATGCATTGTTTGAAAATGACCACAATTTCGA
CGCCCAAATGGGCCTTAGTGAGGAAGGAAAAAGAGACCTGATCTGGTGGA
GAAACTCACTTCCTTCACTAAAAAATTGGATAAGACCTCCCAAAATAGAT
GAAACCATCTCAACTGATGCATCAAAATTTGCTTGGGGTGGAATTTTTGA
CCAAAATATAGGAGGCTCATGGTCACAATCTGAGATTGAATACCACATTA
ATGTAAAAGAGATGTTAGCAATACTTTTCACTTTAAAAAGTTTTGGGGAA
AAATTTGAAAATAAACATATTACTATATTGTCAGATAATACAACTGCAAT
TGGGGTGATAAACAAAATGGGCAGCAGCAAGAGTGTCTTATGTGACAATA
CATGTCATCAGATTTGGGAGTTTGCACAAAAACACAACATGTGGATAACA
TGTTCTTACATCCCAGGAAAAGACAACATTGATGCTGACCATGAATCAAG
AAAAAATTATAAAGGGAGTAACTGGATGTTAAACAGAAAGATATTTTACA
ATGTTTGTCAAGAACTGAATTACTACCCGGATATAGATTGCTTTGCAAAT
AGACTAAACCACCAGACTCCCACTTATATATCATACAAGCCAGACCCAGG
AGCAAAATTTGTTGACAGCTTCACATTAAACTGGTCTCATTTAAATTACC
CATATGCCTTTCCCCCTTTCAGCTTGGTGGGAAGAGTCCTACAAAAAGTC
AAAACAGATCGAGTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAG
CCAGCCTTGGTACACAAAATTAACAAAGATGATGGTCTCAGAACCAAAAA
TCATAAAACCAGGTCAGAAAGTCTTAGTTTTACCGGAGGACCCGACTGCA
ATTCACAACATCTGGAAAAGAGTGGAAATTATGATCTGCCTTGTGTCAGG
GAGGAATATTTAAAACAAGGGTTTTCTGAGGATGCTATTGATATTTTAAT
GAAAAGTTGGCGCTCGGGAACTGTAAAACAGTACCAACCAGTAATAAAAA
ATTGGATTAAGTTTTGTGGGAATGACATAGATCCTTTTCAACCACCCATA
ACAAAGTGTCTTGATTTCCTCTCATCTCTTTTCAAGAATGGGTCAAGTTA
TAACCAGATAGCAAATGCAAGAAGTGCTTTATCGTCAATTGTATCACCAA
TGCATGAAATAACCTTTGGTAGATTACCAGTTGTAAAAAGGTTTATGAAA
GGCATTTTTGAAAGTAGACCTGTATTACCTAGAAATAACATTATCTGGGA
TGTAAATATTTTATTTGATTATCTTAGAACTCTACCAGATTTAGAAGCTC
TGTCCTTAAAACAGCTAACTCAGAAATTAGCAATTTTACTGGCAATTGCC
TCAGGCGGCCAAAGACTTCAAACTGTCCATGCTATTCTTTTAAAAGATAT
CATTTTTCAAGAAAATAAGATTATAATACCTATTACATCTGTTCTAAAAC
AAACGAGACCCTCAAAACACATTGAGCCTCTGACTATCAGAAAATTTGGG
GACAAAAAGCTATGTATACACTCTATTCTTATTTACTATATTGAATTTAC
AAAACCATTAAGAAAGGCAGAACAATTATCTATAAGTTATAGAAAGCCAC
ACAAATGTGTCACAAAAGATACTGTGGCAAGGTGGTGTAAACATATATTA
AGAAACTCTGGCATCGATACCTCTATTTTTTCAGCACACTCGACCAGATC
CGCAACGACATCTAAAGCGAAGTTACGTAAAGTCCCAATGGAACACATCG
TCAGAAATGCTGGATGGGCAAACGCTCGTACTTTTGCAAATCATTATGAC
AAAACTGTCATTGAAGACATCAATCTCTTAGAAGCTTTAACAAATTGAAT
TATATTAAAAACTTTTTGTTGCTATATATATTAAAATTATTTGACTCAAA
TTGTTGTACTCAGATTACACAATAGTCATTCTCTTAAAGAAAAGAAAAGT
TGAATTTATATCGAAAAGAATCGATAATACTGTCTAAAATTCTTTACTCT
GAATTCCGAAAAACTTAGGCACACTACGAAATCTCGCTTTATAGTCGGAC
ATTAAGGGAATAATTTATGCAATAAAATTATCCCAAAACAAACGATACTT
ACCTGTAAGTTGAAGTTTGTTGGGAGTTTTATTAATAAATTATTCCCAGA
TGGATGAGTATAAAGTGCCCACCACTAACAACCCACCCATTTTATACTCA
TCCATCAAATGTACCAAACTTTTTCGGCTATGCTACGAACCCTGAAGTTA
GCTGCGCGTTCTATCTCACTTTATACTCATCCATCTGGGAATAATTTATT
AATAAAACTCCCAACAAACTTCAACTTACAGGTAAGTATCGTTTGTTTTG
GGATAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016173XLOC_016173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028531-exon-sc0000690-1575043694:5189..5333TCONS_00028531-exon-sc0000690-1575043694:5189..5333Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1575043694:4197..4323TCONS_00028531-exon-sc0000690-1575043694:4197..4323Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1575043694:824..1499TCONS_00028531-exon-sc0000690-1575043694:824..1499Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1510915933:5189..5333TCONS_00028531-exon-sc0000690-1510915933:5189..5333Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1510915933:4197..4323TCONS_00028531-exon-sc0000690-1510915933:4197..4323Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1510915933:824..1499TCONS_00028531-exon-sc0000690-1510915933:824..1499Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1491911889:5189..5333TCONS_00028531-exon-sc0000690-1491911889:5189..5333Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1491911889:4197..4323TCONS_00028531-exon-sc0000690-1491911889:4197..4323Clytia hemisphaericaexon
TCONS_00028531-exon-sc0000690-1491911889:824..1499TCONS_00028531-exon-sc0000690-1491911889:824..1499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:824..5333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	1.73614e-06	2.12502	1.43433	0.00776268	1.69599	0.0105771	0.0268734	0.27283	0	1.88939	0.209732	0	0	2.522	2.80407	0.0280289	0.232312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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