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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028529 ID=TCONS_00028529|Name=TCONS_00028529|organism=Clytia hemisphaerica|type=transcript|length=3627bpRun BLAST on NCBI protein sequence of TCONS_00028529-protein >TCONS_00028529-protein ID=TCONS_00028529-protein|Name=TCONS_00028529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1076bp MMGDPIPTNDSDMVELKTIGSTPSSPESPSSNGNLLHPKAANSPPPLKTTRun BLAST on NCBI transcript from alignment at sc0000690:136551..160683+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028529 ID=TCONS_00028529|Name=TCONS_00028529|organism=Clytia hemisphaerica|type=transcript|length=24133bp|location=Sequence derived from alignment at sc0000690:136551..160683+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000690:136551..160683+ >TCONS_00028529 ID=TCONS_00028529|Name=TCONS_00028529|organism=Clytia hemisphaerica|type=CDS|length=32310bp|location=Sequence derived from alignment at sc0000690:136551..160683+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028529 vs. Swiss-Prot (Human)
Match: S12A2 (Solute carrier family 12 member 2 OS=Homo sapiens GN=SLC12A2 PE=1 SV=1) HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0 Identity = 473/1040 (45.48%), Postives = 657/1040 (63.17%), Query Frame = 2
Query: 365 MDTIGYATHEAVPLTMFYRNEASVPGHAKTRPTLEELHKGFDELDEIEAEDGSPPKEKERLIEEG--SKVIPRGGSLKFGWVKGVLVPCLLNIWGVILYLRLPLLTGQSGXXXXXXXXXXXXCVTTITTLSMSAICTNGEVKGGGAYYLISRALGPEFGGSIGIIFSLANAVGVALYVVGFGETVQQLMQNNGLTMVDKYNDXXXXXXXXXXXXXXXXXXXXDWVIKTQXXXXXXXXXSMINYVVGCFSGSVLTDLDEQKLQGFTSFSTQTFKDNLYPEFRSGIEGGXXXXXXXXXXXXXTGILAGVNISGDLKDPGYAIPKGTFTAIVLTTAVYIALAWMIGASTMKDXXXXXXXXXXXXNGTQNSNNQTVRPVGNTTDSR---GLDW--CVPN-CDYGLLNDVQAMERFSLVGHLVLAGIFXXXXXXXXXXXVGSPKTFQAVCRDXXXXXXXXXXXXXXPNDEPRRAYVLTFLISTGFILIGELNVIAPIISNFFLMSYALINYSVFAASLGRSPGWRPSFKYYNMWLSLLGCFLCIGIMFLINWWAALVTIVIIMTLYKYVDYKKPEINWGSSGQAHTYIKALKLAHSLNRTDEHVKNFRPQCLVLTGAPSSRPNLTLLVSHLTRHVGLMICGQVIV--KADGIADTSTVNQEKFLR---QKKLKGFVSVTAAPSLRLGAQALMQCSGLGKLRPNIVVIGYKNDWQTDDMEKVNGYINILHDAFEGKLSVALLRTPQKAKGGFXXXXXXXXXXXXXXXMNMNSFRNEAAMNPPIVLDYDNENDDEGDRSALESQAP-TPNIKRSSTR-------KKKDSG--TPNMNGDREQRSDTILTMDENVTGHIDVWWLYDDGGLTILLPYLLSRNKKYKGCSLRVLTPTSDKKLKSNQVRMASLLKKFRITFSGIVEVVGINSKPASQSIEKF-------------RQTRIKDELSENEP----------LDKKTLRQIRLGELVREHSRNSKLVVLTMPIPRKSVVSNLMYMSWLETISEDLDAEMLFVRGNQTSVLTFYS 3346
+ T G+ T +AVP YR+ A+ G RP+L ELH DEL++ EDG E+ + + G +KFGW+KGVLV C+LNIWGV+L++RL + GQ+GI L +I+++ VTTIT LS SAI TNG V+GGGAYYLISR+LGPEFGG+IG+IF+ ANAV VA+YVVGF ETV +L++ + + M+D+ ND+RIIG I + +LLG+++ G++W K Q+ LL+IL+L++ ++V+G F L+ +K +GF + ++ F +N P+FR E +FF+ F+IFFPAATGILAG NISGDL DP AIPKGT AI++TT VY+ +A +G+ ++D T N N+ V + N T + D+ C + C YGL+N+ Q M S L+ AGIF+ATLSSALASLV +PK FQA+C+D I+ F KG G N+EP R Y+LTFLI+ GFILI ELNVIAPIISNFFL SYALIN+SVF ASL +SPGWRP+FKYYNMW+SLLG LC +MF+INWWAAL+T VI++ LY YV YKKP++NWGSS QA TY+ AL+ + L+ ++HVKNFRPQCLV+TGAP+SRP L LV T++VGLMICG V + + + + S ++Q K+ R + K+K F + A LR GAQ LMQ +GLG+++PN +V+G+K DW DM V+ YIN+ HDAF+ + V ++R K G E + S + ++ +V+ + + D S S+ P T ++ + KK+ G P D++ + + IDVWWL+DDGGLT+L+PYLL+ KK+K C +RV ++ ++ MA+LL KFRI FS I+ + IN+KP ++I F ++ I D++ E+EP KT RQIRL EL++EHS + ++V+++P+ RK VS+ +YM+WLE +S+DL +L VRGN SVLTFYS
Sbjct: 210 LRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELH---DELEKEPFEDGFANGEESTPTRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLKEHSILMIDEINDIRIIGAITVVILLGISVAGMEWEAKAQIVLLVILLLAIGDFVIGTF-----IPLESKKPKGFFGYKSEIFNENFGPDFR---EEETFFSVFAIFFPAATGILAGANISGDLADPQSAIPKGTLLAILITTLVYVGIAVSVGSCVVRD-------------ATGNVNDTIVTELTNCTSAACKLNFDFSSCESSPCSYGLMNNFQVMSMVSGFTPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFKYYNMWISLLGAILCCIVMFVINWWAALLTYVIVLGLYIYVTYKKPDVNWGSSTQALTYLNALQHSIRLSGVEDHVKNFRPQCLVMTGAPNSRPALLHLVHDFTKNVGLMICGHVHMGPRRQAMKEMS-IDQAKYQRWLIKNKMKAFYAPVHADDLREGAQYLMQAAGLGRMKPNTLVLGFKKDWLQADMRDVDMYINLFHDAFDIQYGVVVIRL----KEGLDISHLQGQE-------ELLSSQEKSPGTKDVVVSVEYSKKSDLDTSKPLSEKPITHKVEEEDGKTATQPLLKKESKGPIVPLNVADQKLLEASTQFQKKQGKNTIDVWWLFDDGGLTLLIPYLLTTKKKWKDCKIRVFIGGKINRIDHDRRAMATLLSKFRIDFSDIMVLGDINTKPKKENIIAFEEIIEPYRLHEDDKEQDIADKMKEDEPWRITDNELELYKTKTYRQIRLNELLKEHSSTANIIVMSLPVARKGAVSSALYMAWLEALSKDL-PPILLVRGNHQSVLTFYS 1212 The following BLAST results are available for this feature:
BLAST of TCONS_00028529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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