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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028518 ID=TCONS_00028518|Name=TCONS_00028518|organism=Clytia hemisphaerica|type=transcript|length=1750bp
aacgaggctaaagctttggagcagcctacaggcctccaaaatggtcggat
ttggttgaaatttgacaCACTTGTGAGAGCactcacaaatcgattgtggt
cgATTGATGTCTCGTTGTGCTGATTTGCTGACTGTTCGACTTCTTCTTGA
ACCTAAGGGCGAACACACTTGATTAAAATAAggattttcacaattttttt
ataatctttgaagaaaaaatccatCATAAGAAATAGCGAATCAAATGCTA
TTTCAATGATTATTCTACCAAACGCATGAAACTCAGAAACTCAAAAGGTA
AAATCATTAGTCCAATGTCTTACAGCTGGTGTCACTCACTGATACAAGAT
ACAAGGAACTGATTTGTTTCGATCTGTCCTGGTAAACTCGAActtaaaat
agaataaaaaatataattgttCTACGTATAAattctttttgtgttttgaa
tgttttataGTTTAAATGTGATTAAGTTAAATTGAATTAGGGTGCAGTTC
ACCCTACACTGCCCCGCCACAGGTGGCAAATTGATTAATTAGCATTATAC
AAGTCCAACATCACAGAGGTTTCATCCACCCGATGAATAACTACAAGGTT
TCGAACAGGACGAAATGCAAAACGATGAGTATTTCCTTTCTTTCGGTTAC
GAGATTTgataaataattttgaaaagctaataaaaaaatattaaaatcaa
atgttaaaaacattatcAGGTTAGTTGTAAAGAATAGGTCGATTTTAAGC
AATGTTACCTTTGCTGTGAAGTTCACCAACAGAGCATAGTTTTGGTCCGA
TCTCGGGTCACCCTGTTTCAATAagatttattttcttcattagAGGGCCT
ACGACAATACCAGAACCGATGCACTCTTCTAAACCAAGGTATTGTGTAAA
ACAACTGGCTACGTCTGTTGACTTTTTGGTCACATCTAATGCGAATTTGT
AATCACGTAAAGGCGCTCCGTGTTTGTCCTTATAAACCTATTaatttata
ttttaattttcataaaacatttggtaaaaatattcaaaatgactgTCAAA
TAGAGACtcgaaacaaacttttttttgtcagaaatatatgaaaagtaata
attttctAAGAATATCAACAGCCTCAAATAAGGAactatgtttgtaaaaa
agcgtACACGAGCGtatttgcttttataagaacatccacaatGCCTTTGG
AGCTTGGCTCTTTTAGTGCTTGGGTATGTGCTCATGCGAGCGGATCGTTT
TACGGGATTGTCTTTGGCTAGCGATGGCTGGTGCGTCATTTGAAGATGAG
GTAAATCCCCTTGATTTTGAGCAAATACGATGATCCCCCGGTTGGGTCGA
GTAATATGAGTCGGAACTGTCAGATGACATTGCCGTAGCCGATTGCTCAG
ATCTTAGTTTCCTTAACGAGACCAGATTTCCCCTTcgatttcgaattaga
gagagtccactgaagtaaaaataaatttgaaaataactcACATTATAGTA
AATCGACATGACCAAGTCTCCTAGTACAGAAAAATTTTCTGCATCTTccc
gcaactttggtaggatttgctGGCTTCAAATcttaccaaggagattgact
tctagcccttcgggcttatacttcattgggtatattggcccgctccttca
gagctttagcgtgggcggccgccaatacgccatcggaatatcagataagt
caTGTGGATTCtatgaaaaataacttttaattaAGTTTAATACTTCTAAC Run BLAST on NCBI transcript from alignment at sc0000683:145001..146750 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028518 ID=TCONS_00028518|Name=TCONS_00028518|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at sc0000683:145001..146750 (Clytia hemisphaerica)
GTTAGAAGTATTAAACTtaattaaaagttatttttcataGAATCCACAtg
acttatctgatattccgatggcgtattggcggccgcccacgctaaagctc
tgaaggagcgggccaatatacccaatgaagtataagcccgaagggctaga
agtcaatctccttggtaagATTTGAAGCCagcaaatcctaccaaagttgc
gggAAGATGCAGAAAATTTTTCTGTACTAGGAGACTTGGTCATGTCGATT
TACTATAATGTgagttattttcaaatttatttttacttcagtggactctc
tctaattcgaaatcgAAGGGGAAATCTGGTCTCGTTAAGGAAACTAAGAT
CTGAGCAATCGGCTACGGCAATGTCATCTGACAGTTCCGACTCATATTAC
TCGACCCAACCGGGGGATCATCGTATTTGCTCAAAATCAAGGGGATTTAC
CTCATCTTCAAATGACGCACCAGCCATCGCTAGCCAAAGACAATCCCGTA
AAACGATCCGCTCGCATGAGCACATACCCAAGCACTAAAAGAGCCAAGCT
CCAAAGGCattgtggatgttcttataaaagcaaataCGCTCGTGTacgct
tttttacaaacatagtTCCTTATTTGAGGCTGTTGATATTCTTagaaaat
tattacttttcatatatttctgacaaaaaaaagtttgtttcgaGTCTCTA
TTTGAcagtcattttgaatatttttaccaaatgttttatgaaaattaaaa
tataaattAATAGGTTTATAAGGACAAACACGGAGCGCCTTTACGTGATT
ACAAATTCGCATTAGATGTGACCAAAAAGTCAACAGACGTAGCCAGTTGT
TTTACACAATACCTTGGTTTAGAAGAGTGCATCGGTTCTGGTATTGTCGT
AGGCCCTctaatgaagaaaataaatctTATTGAAACAGGGTGACCCGAGA
TCGGACCAAAACTATGCTCTGTTGGTGAACTTCACAGCAAAGGTAACATT
GCTTAAAATCGACCTATTCTTTACAACTAACCTgataatgtttttaacat
ttgattttaatatttttttattagcttttcaaaattatttatcAAATCTC
GTAACCGAAAGAAAGGAAATACTCATCGTTTTGCATTTCGTCCTGTTCGA
AACCTTGTAGTTATTCATCGGGTGGATGAAACCTCTGTGATGTTGGACTT
GTATAATGCTAATTAATCAATTTGCCACCTGTGGCGGGGCAGTGTAGGGT
GAACTGCACCCTAATTCAATTTAACTTAATCACATTTAAACtataaaaca
ttcaaaacacaaaaagaatTTATACGTAGaacaattatattttttattct
attttaagTTCGAGTTTACCAGGACAGATCGAAACAAATCAGTTCCTTGT
ATCTTGTATCAGTGAGTGACACCAGCTGTAAGACATTGGACTAATGATTT
TACCTTTTGAGTTTCTGAGTTTCATGCGTTTGGTAGAATAATCATTGAAA
TAGCATTTGATTCGCTATTTCTTATGatggattttttcttcaaagattat
aaaaaaattgtgaaaatccTTATTTTAATCAAGTGTGTTCGCCCTTAGGT
TCAAGAAGAAGTCGAACAGTCAGCAAATCAGCACAACGAGACATCAATcg
accacaatcgatttgtgagtGCTCTCACAAGTGtgtcaaatttcaaccaa
atccgaccattttggaggcctgtaggctgctccaaagctttagcctcgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028518-exon-sc0000683-1491911889:145001..146750 | TCONS_00028518-exon-sc0000683-1491911889:145001..146750 | Clytia hemisphaerica | exon |
| TCONS_00028518-exon-sc0000683-1510915933:145001..146750 | TCONS_00028518-exon-sc0000683-1510915933:145001..146750 | Clytia hemisphaerica | exon |
| TCONS_00028518-exon-sc0000683-1575043694:145001..146750 | TCONS_00028518-exon-sc0000683-1575043694:145001..146750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000683 | supercontig | sc0000683:145001..146750 . |
Blast
The following BLAST results are available for this feature:
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