TCONS_00028515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028515
Unique NameTCONS_00028515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028515 ID=TCONS_00028515|Name=TCONS_00028515|organism=Clytia hemisphaerica|type=transcript|length=587bp
ttctctttgacagctgaaaatattcttaagaatTAATAAACGCGGGGGTC
Cttataaggtccgggggggttggaaaattttcgaaaaattaacaagcggg
gggggggccgtttatttggcacctaagagtaagaaAAAAGCCTCGAGGCC
ACGATAGAAAACAAGATtaactgaaaatttcatttcattttgtgCACTCA
AAAAATCATTATCGTTCGAAGTTAACTTTGACtgatttaaacttttttaa
ctgAAGAATTCCccgattcaaaacaaaaagaaaaataagaatcttGTATC
CATCTATGTATTTGCAATacaataacatttttaaacaaagaaatgcacat
tcttttctttttattaatgACTACGCAGACTGAGAATGCTGCCCATAAGA
GATTCAAAAGAAAGTGTTCATTTTTTGGAGTTGGCAAAAACGAAACGACA
AAACATGAATCGATGAGCAAGACCACATCGTCCGAATCACGACCAGCTCC
AACCGTCGTTATGAGTTCGCACTAGAGTAACAGAGACATTTCCTCCTGAC
AATCATTATGATAGAATCCGTTTATGGAGCATGCGGT
Run BLAST on NCBI

transcript from alignment at sc0000683:127396..127982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028515 ID=TCONS_00028515|Name=TCONS_00028515|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at sc0000683:127396..127982 (Clytia hemisphaerica)
ACCGCATGCTCCATAAACGGATTCTATCATAATGATTGTCAGGAGGAAAT
GTCTCTGTTACTCTAGTGCGAACTCATAACGACGGTTGGAGCTGGTCGTG
ATTCGGACGATGTGGTCTTGCTCATCGATTCATGTTTTGTCGTTTCGTTT
TTGCCAACTCCAAAAAATGAACACTTTCTTTTGAATCTCTTATGGGCAGC
ATTCTCAGTCTGCGTAGTcattaataaaaagaaaagaatgtgcatttctt
tgtttaaaaatgttattgtATTGCAAATACATAGATGGATACaagattct
tatttttctttttgttttgaatcggGGAATTCTTcagttaaaaaagttta
aatcaGTCAAAGTTAACTTCGAACGATAATGATTTTTTGAGTGcacaaaa
tgaaatgaaattttcagttaATCTTGTTTTCTATCGTGGCCTCGAGGCTT
TTttcttactcttaggtgccaaataaacggccccccccccgcttgttaat
ttttcgaaaattttccaacccccccggaccttataaGGACCCCCGCGTTT
ATTAattcttaagaatattttcagctgtcaaagagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016161XLOC_016161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028515-exon-sc0000683-1491911889:127396..127982TCONS_00028515-exon-sc0000683-1491911889:127396..127982Clytia hemisphaericaexon
TCONS_00028515-exon-sc0000683-1510915933:127396..127982TCONS_00028515-exon-sc0000683-1510915933:127396..127982Clytia hemisphaericaexon
TCONS_00028515-exon-sc0000683-1575043694:127396..127982TCONS_00028515-exon-sc0000683-1575043694:127396..127982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:127396..127982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409404	0.457892	0.524657	0.545019	0.428432	0.42385	0.671343	0.52969	0.172641	0.104691	0	0.273916	0.312105	0.540567	0.970808	0.259386	0.580019	0.159419	0.742005	0.882076	1.02914	1.32978	1.13953	2.57845	1.90883	1.26841	0.649334	0.70954	6.58702	2.29927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top