TCONS_00028501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028501
Unique NameTCONS_00028501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028501 ID=TCONS_00028501|Name=TCONS_00028501|organism=Clytia hemisphaerica|type=transcript|length=3454bp
ttcaggTGTACATGAGTGTGGTGATTTTCATGCTTGCATACAAATACTTA
TTACACGAAATGAAAAAGTCCATTCAGCACAAACCAAAATTCAACAACAT
GGCAAACTGCAATGTGCAAGTTCCACCCCCTACAACTCAACACCGAATCA
AAGAGACAGAGTAAATCTGTCAAACGAAGAAATCTTACAGCTTTGTAAAG
AGAAGAAACTTGCTTTGCATAGCTTGGAAGCCACGCTCAACGATCACAAG
AGAGCTGTCGAAATAAGACGATCATTTGTGACAGCTGAGATTGGAAAAGA
AGCGGACGCACTGGATGATCTACCGTACGAAAATTACAATTATGAAAAGG
TTTATGGTGTCTGTTGTGAAAATGTCATTGGTTACTGCACTATTCCTTTG
GGCGTCGCGGGGCCTCTGTTGCTAGACAACAACAAATTCTATGTTCCCAT
GGCAACAACTGAAGGTTGTTTGGTTGCGAGTACTAACCGTGGTTGTTCAG
CATTGAGGGCGTCTGGTGGTGTATTCAGTTACTTGATCGGTGACGGAATG
ACTCGTGGTCCAGTCGTACGTATGGCGTCGGCTCGTGAAGCGTGTCTGGT
ACGTGAGTGGATTGAAGAACAAGATAATTTCGTCATTCTTTCAGAAGCAT
TCAATCAAAGTAGCAGGTTCACTGAACTTCAAGAGATCTAGTGTGCGATG
GCTGGCAAACTATTATTTCTTCGTTTCAAAGCTTCCACTGGTGACGCTAT
GGGAATGAATATGGTCTCAAAGGGTACTGAACACGCGCTGAAATATTTGA
AGATTCAATTCCCAAGTATGGAAGTGGTCAGTCTCAGTGGCAATTATTGT
ACCGACAAAAAACCGAGTGCTATCAACtgGATTGATGGTCGTGGTAAAGG
TGTCATTTGTGAAGCTACCATCCCTGGTGAAATCGTCCGAAAGTTGTTGG
GTTTGGACGAGATCCGTGGAATGCCCGGGAAAATTATTAGCCGGTGAACT
ATCTCTTCTCTCAGCACTAGCGTCGAATCACTTGTTGAAAAGTCACATGA
AATTAAACAGACAATCCACTCCATCATCGACTGGTGATAAACCTACGACC
ACATGTCCTGTCCTGTGATTGATGGAAAGTAGTTTTAGGATTACAGTTTA
GACTCTTTTTAATTGGAACCTATCTCATTAATGTGAGATGTGAGATAATT
GATGTGAGATATGTGCGATATTTGATGTCATTGTTTCGGCGCGCTCGata
atacagggtgtccggaaaaaagtatcgagtcgtaccacttctatagaaag
ttcttgtgtgtgtttcactagattttcaatgtttatcaaagctTTTATCA
TGACACAGAGAGTCATATTAATTGTCCAGAGACcttttttatgaataact
tttacaaaaaacaattctcaataactttaacgtcatgaaatGTAATTCTT
CTTAATCATAATACAGTAGTTCCATttatattaccgagtttatgtaattg
cacttttgaggacggtagagtgactgaagcgatttggaaaaacccgcaat
tccgccccgcaaaatcgagggcagtaaaagtgctgatttaccgtcgtcct
cagcgggtcaggatctactcaaattagaaccttaccgtctccgtcgctga
aaaacacacatacataaactcgctattatacTGAGACGGAACGACGGAAA
AGTCGTCTGAGacaaaaagtttgtaaaatttgatctgtggaggagatcct
atatattgaaacatgaatggaaagtatactcctccataatgctcgtctca
gacaaattaatcgtctcagtataaatagaactataacgactgttgtaaaa
acaattattgtgttggtatatattttcttacattttgttaaacacacgca
acaaccttctactcagaatcatgttcgaactcgatactttttttccggac
accctgtacagtACTTATTTCTGACGTTATTCAGCCAAATGAGCTTCAAC
TAAATCTTCTGTTGTAAAAAATTGAGAGATGTACTATTCCAGAAATGATC
TACACAAGAGAGGTTTCAAAGAGCAAATATTTCTAGATAGAGAGTTCCTA
CAATtatcaaaaaattatgaaatttatgaatgagtgtatatttttttttt
ggatttacatacaattttattttttatttggaaaatttttgaaaatatca
tttttttatttatctaaGCCATCATGTATGTTGGAAAGACTGGACTGGAT
GTGTCGCTAAACATCTTTGTGCTCGACTCAATGGCAATAGAAAAGTAATT
GTCATGATTATGCTTGTGAGCTTGACCCTTGGAAAgacaaaattgctaaa
aaagtgacccttagagagacattttcacaaaaatttcgtCGATTATCAAA
AGAATTCCCCAAAACATTCGgttgaactcatgtaattcgaactcctataa
ttcgaacaGATTCTGTGGTCCCCTCAGAATTTACCTCGAAACCCTTACAA
GAAAactcctataattcgaacccatgTAATTCGAAAAATCACGTAAATCG
AACAGATTTTCCGGTCCCATCTAGAAATTTTGATcgtgtaattcgaattt
tcgaattttcgatttttttgagtttttgaagcTGACAAACTCGACATTTT
GTCAATCCAACGTTTTGACGTTCGAATAATTGTTTGCCAatagaatgttt
tctttttttatattcgATTGGAGCTCGTCCACTGCTTTTGCCTTCTATTC
TTCCATTTCTTATCAAGACAAGAtgggaaaaagaaaacataacgAGAAGT
CACTTTAAAAAGGAAATATGAAGCTCTCCGTGATTTGGAGGATAGTATGT
CCAATAAAGACGCAAAAGTAAAATTGGGAAAGACTTTTTTCATCGAATTA
GGTCAAAAATACGAAAACTCATCTAGTTCGAAACTcgtgtaattcgaaca
aaattctcggtcccttgagaattcgaattacatAAGTTCAACTgcgctga
tttttgcaacccttaagttaaagagactttgaaaggtttaaaacccgacc
cttaccgtccggaCATACCCAGCATTCATTTTTTGCCTAAGACCATCTCC
CCCCCCCTCTTCCGGGGTTAGCTTTTTGAACATTGTCTTCGTTCTTCCTt
atgtttaaattttcaattcttctttttatttggtttttcaTTACTTTGTC
ACGTGAAGGTGTTGAAATTCtactcttttgtttttcttttttgatcaGAG
TGTAAAAAGAAGCCGATTTACTTTCCAATAAAAACATTGGCTATTTCaat
cacttttttataagaaccaccTAGTCAAACAGCCAAAGCTATTTGCATGA
ATATTCATGCTATTTATTGTAAGAATTTCTAGGAAACACTCCGGTTTTTG
CACCATAGTAGTGGTGAATCTTAAACAATATTTCTGTAGTctgcgcgcat
cccc
Run BLAST on NCBI

protein sequence of TCONS_00028501-protein

>TCONS_00028501-protein ID=TCONS_00028501-protein|Name=TCONS_00028501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
SGVHECGDFHACIQILITRNEKVHSAQTKIQQHGKLQCASSTPYNSTPNQ
RDRVNLSNEEILQLCKEKKLALHSLEATLNDHKRAVEIRRSFVTAEIGKE
ADALDDLPYENYNYEKVYGVCCENVIGYCTIPLGVAGPLLLDNNKFYVPM
ATTEGCLVASTNRGCSALRASGGVFSYLIGDGMTRGPVVRMASAREACLV
REWIEEQDNFVILSEAFNQSSRFTELQEI
Run BLAST on NCBI

transcript from alignment at sc0000683:61553..69379-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028501 ID=TCONS_00028501|Name=TCONS_00028501|organism=Clytia hemisphaerica|type=transcript|length=7827bp|location=Sequence derived from alignment at sc0000683:61553..69379- (Clytia hemisphaerica)
TTCAGGTGTACATGAGTGTGGTGATTTTCATGCTTGCATACAAATACTTA
TTACACGAAATGAAAAAGTCCATTCAGCACAAACCAAAATTCAACAACAT
GGCAAACTGCAATGTGCAAGTTCCACCCCCTACAACTCAACACCGAATCA
AAGAGACAGAGGTTTGAAATTTATTCAAATAATTAATCTAAAAATCTTTA
AACATGCTACTTTTGTTTTATTGATTTTGGTGTCTTCAGCCGCGGAACTT
TGCCAAAGTTGCTAACAATCATAGGAATACTAACAATTTCTACTAACAAT
AAGAGCTTTCCCTAGGATTGTCTCCTTGCTTATTTTGCTTCGGTTTGAAA
ATGCAAGTGGATGATTAAAAAAATATCGAAAATCAAGGCCTCGTTGAGAA
TAGTGCTAATTTGAAAAGACAATAATTATAATTGAGGGTCCGGTTCGGGG
GTCTTCATAAAATCTGAGTGCAAATAGATAGAGTCGATATTTTACGTGGA
TAGCCCAGACAGTCTTTCAATTGTTTTCACGTGGTCTACGGACAGCTGAA
CGGATCATTGGAAATAGGATTCGAACCTTTAGTTTGTACCACTGACGCCG
TTGATCACTTAAAATATGAATGATTTTTTTCTAAGATTTAGTAAATCTGT
CAAACGAAGAAATCTTACAGCTTTGTAAAGAGAAGAAACTTGCTTTGCAT
AGCTTGGAAGCCACGCTCAACGATCACAAGAGAGCTGTCGAAATAAGGTG
CGTATATATTCAGGGATTTTTCTAAGCACTTTGAGCTGGGGTTTTTTTTG
TAAACTTAGATTGAGTTTGTAATATGCCTGAAAGGGAATTTTCGGAACAA
AGTTGTACCATAATGTCGACATCCCCCTTCTAATTTCGACACCCTTCTTT
AGAGATATGAATGATTGGAAGGTCGGAATTGCTGGTGGAAACTATTTTTC
TTTGCTTATCGATGAGAGGGTGGCCGGTATACGGACATAAAAAGTGCTTA
GAAAAATCCCTGATATTTGGTTGTCAGTTTCTCATTGAAGATTTTCAAAA
GACTCGATAAATTGCACAATGTAACGAAGTTATCTGACTTTTCAGATTTA
CGTAGCCGATTTGTCCATTCTGTCTGTGTATTTTGGAAGCAATTAAAGTC
CATTAGAATTAGTCTGCATCCTCTTTTGCTACCGTGTGGAAACCATGTAG
CGCACTTAATTAATCTAATCCCCTTGATTTTGGCTTCAAGAAGTTTGCAG
TGGGAGGTCTGGTAACCCAGCCCTCGTTTTTGGGGAATGGCGGGTCCAAC
CGAAATATTTTTAGCTTTACGCGCAGGGGTAGTTGAACCCGACTTGGGAT
GTGGCAAAGGACGACTATCATAACTCTCCGATGGGAAATTGGCCTGCTCC
TTTAGAGCTATAGCGTGGGCGACCACCGATCCACCATTGGAATATCAGAT
AGATTGATTTTTCACTTTGACTTTTCAGACGATCATTTGTGACAGCTGAG
ATTGGAAAAGAAGCGGACGCACTGGATGATCTACCGTACGAAAATTACAA
TTATGAAAAGGTCAGGATTACTAAGCTGCTAATTTACAGAACTTACTCTA
CTTGCACTATTTTAGCTTTTCTCGAGAATGTTAACATCGCTCTCTAGCCC
TCATTCCCAAAAAATGCAGTATAAATCGACATCGAGCGCTTCCATAAAGC
GAACCTGTTTTTCCCTTCCCCCTTTCAGACATTTTTGTCTCTATTATTTG
AACGGAGATTATTGATGTTCAAGTTGTGAATGTTCAACACTCCGATGTCT
CCAACTGACTTTAACCTTTATTTTGTCTCTGGTTCTTTTAGCCCCATCGC
GTACGACCTTAAAAACTCCTGATCTTGAATACAAGTTTTTTTTATTTTTG
AAGCCTTGGGATGTATTTTACTTTTTTAGTTTTACGCCTAAAAGTAAAAA
TGTTCTTAACATATTCTTATTTTCATCATTTTGTGAATGTGTTTGTGCAA
TTTTCTTATAAGAAATCGGGTGTTTTGGAGTTTGCAAAGCCTTAAAATGC
TCTTAACTTGTTCTTAATATTGTAGCCATCGAAGCCTTTTGTTCTTATAT
AGTTTGTTCTTATAAAAAACGTTTTTTTTATAGTTTTATAGTTTGTTCTT
ATAATTAAAACGTGTATTGTCAAATCATTTTTCAGGTTTATGGTGTCTGT
TGTGAAAATGTCATTGGTTACTGCACTATTCCTTTGGGCGTCGCGGGGCC
TCTGTTGCTAGACAACAACAAATTCTATGTTCCCATGGCAACAACTGAAG
GTTGTTTGGTTGCGAGTACTAACCGTGGTTGTTCAGCATTGAGGGTACGT
TTCTTCGAATTTTATGCTTTCCGTCCAAAATGATCATCTTTGACCTCTGG
TGGTAATGATTCATAATCGTGTGGATAATTGTTTTTTTATAACCACTCTA
TTTTCATTGTTTTCGATAGTAGAAATCAAAAAAATTGCACTTGAAAGTAG
AGTGCCATAGGAAGCAATTTAATATTGGGGGGGGGCATAAGTTCAGTGAC
ACCGCGAGGGCCAACTATGGTTTTGCCCGAGGGGGGAAATCTTGAAATCT
AGAGCTCTAAAAACTAAAATAATTCGAATAAAGGCAAAATTTAAAGGTAA
AATATTCCATTTTATGAAAAAAAATCGCTTTCAAAACAATTATTGGGGGG
GGGGCTAGCGAGGTAGCTAAGGCACTGATGAGTAGTAAACGATTATTTTT
TAAAGTGAAAATGATTGGACCATACTTTACAATTGATTTATTCCGTTACA
AATTCCTCTAGAAATTAACCATGGGAAGATTTTCCTCACTTTCCTCAGGC
TAGATAGAACCGGATCGATATAATTCTTTAAGATTTTACCAATCATTAAT
GGCAATGTACATTGCTCTTCTCATTTTCTTCTCCCGGGGCATCTTCCAGG
CGTCTGGTGGTGTATTCAGTTACTTGATCGGTGACGGAATGACTCGTGGT
CCAGTCGTACGTATGGCGTCGGCTCGTGAAGCGTGTCTGGTACGTGAGTG
GATTGAAGAACAAGATAATTTCGTCATTCTTTCAGAAGCATTCAATCAAA
GTAGCAGGTTAGATTTTAAGGATCTATTTTGTTTTGATTTCGACACACTG
GTCACATAGAATGCCACCCCCACCCCCCACCTGAGCTTAGAGGGGGGAGC
TAAACCATTTTTGCTTATGATGAATTTTTCAAAAATACTGGGGGCTAGCT
TGCTAGGGGGCCGAGTGTTGTGTAATAGAACTGGGGGCAGAGCTGATAGG
TTGAAGATATTTTAAATTACGTTAAAAATCTATGCTTTGGGGAAGGTTTT
ATCCCTCTTCAAAAAAATGTTTAACTGCGGCACAATAAATTTATCGAGAA
CTTGCATGCAAAATTTCTTTGATATTTTGCTTTGTGAAGGTGGGGGCTAT
ATGTTTCTAGAATTTAGCCGGGGGCTTTATGTTTCTAGAATTTAGCCGGG
GGCTATTTTCCTTAGCCCCCCCCCCCTGAAAAATGCTGGGGCTGGACTCC
TCTGCACACTATGGACCATTCTTACCATCAAGAATGTCGAAAACCAAATA
GTTTAAGTACAAGCGGGTTGGACATTCAAGTCCTTATTAAAAGATATTTA
TAACAGTGAAGTTCAAAAAGAGGCTTTTCCTTCACAAAAATTGAGCAAAA
TCAAGTAAAATGCTAAGAATTTGAAACTGTGTTAGTAATTTTTTCAAAAT
TTCGTTTGAGACGAAAGACTTTGCTTTTACCACTAATAAAAAGACCGTCA
TTTTCGAAAGTCTTCTCTGTAAAACATTTTGTCGCCCTTTTTTATCACCA
TAGGTTCACTGAACTTCAAGAGATCTAGTGTGCGATGGCTGGCAAACTAT
TATTTCTTCGTTTCAAAGCTTCCACTGGTGACGCTATGGGAATGAATATG
GTCTCAAAGGTAAGATGATATTTTTGCTCGTTATGTTCTTTTTTTAATTA
CCTTCTAAATTAGATCCCCTTAAAGCCAGATTGACATTATGTTTTCCGAG
GTCTGAATCGCTGGTTCAAAAACGCTGAGCTTGCATAAAGATCGCAGTTA
TTCAACCAATCGTCAAAACAAAAGATAGCGCGTGACGTAACTTAATTGTT
CGATTCAACACTGCAATGTCTTCACTTTAATAAACATTTTAATGACCAGA
GAGTTTACAATGTTTTGACTGCAAAGTGCCGAATAAGAATTAGAATGAAT
CTTCTGCGTTTTTAATGGAGCTGTGGAATGTTTTGGCAGAATAAGCAAAC
AGACTCATGAATAGATATACTGGCTTTAAAATTTTTTAAGAAAAGTTCTA
CTTCCCAAAAATTTTACTCTTTGAACTACCAAATTAATCAACTCTGATTA
ATTTGATATTGCCATAAAAGGCAATTACCCTTATTTTGTGATCAATATTG
TTTAGCTTATGACACGAAAAAGATTTTTATACACGTCTTCTTTATTGTAG
GGTACTGAACACGCGCTGAAATATTTGAAGATTCAATTCCCAAGTATGGA
AGTGGTCAGTCTCAGTGGCAATTATTGTACCGACAAAAAACCGAGTGCTA
TCAACTGGTAAATTATTTTTCTCATTATCCTCTCAGTCTATAAGATCCCC
CCTTCTTTTGGCTATTTGTAAACATAACAGGCTCAAAGGTTATACCACGC
CAAATACAAAATGTTATTCGACGCCTCTCTGTATATTTGATGTGCCATCC
AGTCTATAAAAAAGTTGTATGTAAGTGGATTCCGGGCTAACCTTCGGGTA
GGCAGTTAAGAAAAGGAAGGTATCGGGTTGCCCTCGACACCGAATTCACA
TACGTCTATAAAAGTTATATTCTTCTTCTTTTATGTTTTAGGATTGATGG
TCGTGGTAAAGGTGTCATTTGTGAAGCTACCATCCCTGGTGAAATCGTCC
GAAAGGTAGGTATTATGTAAGCAATTTCACTGATCAATATTATCGTCTTT
GTTAGTCTATGTGTATACGTAACTCAAACATGCATGGGGAACACAAATTT
GTTCGAGCTAAGGAAATTTCGAGTTGCGGTGTAAGGTTTATAAAGCAGAA
GGGACATACAACTTTTGGTAAGTACTTCATGTCTTCTTGCATGAAAAATG
TCTAATGAATGAATGCAATTTCAGAAGGATGGAAAAAAATATTTCCACCC
TATATAAACAGTTTTCTCATGTTAACATTTTGATTTTAGTTGTACCATAT
AGAATAACAGATTGTTTCGTGCCGTTTCGGAATAGAATAACAGATTGTAT
GTTTATTCTTTTTCAGTTGTTGGGTTTGGACGAGATCCGTGGAATGCCCG
GGAAAATTATTAGCCGGTGAACTATCTCTTCTCTCAGCACTAGCGTCGAA
TCACTTGTTGAAAAGTCACATGAAATTAAACAGACAATCCACTCCATCAT
CGACTGGTGATAAACCTACGACCACATGTCCTGTCCTGTGATTGATGGAA
AGTAGTTTTAGGATTACAGTTTAGACTCTTTTTAATTGGAACCTATCTCA
TTAATGTGAGATGTGAGATAATTGATGTGAGATATGTGCGATATTTGATG
TCATTGTTTCGGCGCGCTCGATAATACAGGGTGTCCGGAAAAAAGTATCG
AGTCGTACCACTTCTATAGAAAGTTCTTGTGTGTGTTTCACTAGATTTTC
AATGTTTATCAAAGCTTTTATCATGACACAGAGAGTCATATTAATTGTCC
AGAGACCTTTTTTATGAATAACTTTTACAAAAAACAATTCTCAATAACTT
TAACGTCATGAAATGTAATTCTTCTTAATCATAATACAGTAGTTCCATTT
ATATTACCGAGTTTATGTAATTGCACTTTTGAGGACGGTAGAGTGACTGA
AGCGATTTGGAAAAACCCGCAATTCCGCCCCGCAAAATCGAGGGCAGTAA
AAGTGCTGATTTACCGTCGTCCTCAGCGGGTCAGGATCTACTCAAATTAG
AACCTTACCGTCTCCGTCGCTGAAAAACACACATACATAAACTCGCTATT
ATACTGAGACGGAACGACGGAAAAGTCGTCTGAGACAAAAAGTTTGTAAA
ATTTGATCTGTGGAGGAGATCCTATATATTGAAACATGAATGGAAAGTAT
ACTCCTCCATAATGCTCGTCTCAGACAAATTAATCGTCTCAGTATAAATA
GAACTATAACGACTGTTGTAAAAACAATTATTGTGTTGGTATATATTTTC
TTACATTTTGTTAAACACACGCAACAACCTTCTACTCAGAATCATGTTCG
AACTCGATACTTTTTTTCCGGACACCCTGTACAGTACTTATTTCTGACGT
TATTCAGCCAAATGAGCTTCAACTAAATCTTCTGTTGTAAAAAATTGAGA
GATGTACTATTCCAGAAATGATCTACACAAGAGAGGTTTCAAAGAGCAAA
TATTTCTAGATAGAGAGTTCCTACAATTATCAAAAAATTATGAAATTTAT
GAATGAGTGTATATTTTTTTTTTGGATTTACATACAATTTTATTTTTTAT
TTGGAAAATTTTTGAAAATATCATTTTTTTATTTATCTAAGCCATCATGT
ATGTTGGAAAGACTGGACTGGATGTGTCGCTAAACATCTTTGTGCTCGAC
TCAATGGCAATAGAAAAGTAATTGTCATGATTATGCTTGTGAGCTTGACC
CTTGGAAAGACAAAATTGCTAAAAAAGTGACCCTTAGAGAGACATTTTCA
CAAAAATTTCGTCGATTATCAAAAGAATTCCCCAAAACATTCGGTTGAAC
TCATGTAATTCGAACTCCTATAATTCGAACAGATTCTGTGGTCCCCTCAG
AATTTACCTCGAAACCCTTACAAGAAAACTCCTATAATTCGAACCCATGT
AATTCGAAAAATCACGTAAATCGAACAGATTTTCCGGTCCCATCTAGAAA
TTTTGATCGTGTAATTCGAATTTTCGAATTTTCGATTTTTTTGAGTTTTT
GAAGCTGACAAACTCGACATTTTGTCAATCCAACGTTTTGACGTTCGAAT
AATTGTTTGCCAATAGAATGTTTTCTTTTTTTATATTCGATTGGAGCTCG
TCCACTGCTTTTGCCTTCTATTCTTCCATTTCTTATCAAGACAAGATGGG
AAAAAGAAAACATAACGAGAAGTCACTTTAAAAAGGAAATATGAAGCTCT
CCGTGATTTGGAGGATAGTATGTCCAATAAAGACGCAAAAGTAAAATTGG
GAAAGACTTTTTTCATCGAATTAGGTCAAAAATACGAAAACTCATCTAGT
TCGAAACTCGTGTAATTCGAACAAAATTCTCGGTCCCTTGAGAATTCGAA
TTACATAAGTTCAACTGCGCTGATTTTTGCAACCCTTAAGTTAAAGAGAC
TTTGAAAGGTTTAAAACCCGACCCTTACCGTCCGGACATACCCAGCATTC
ATTTTTTGCCTAAGACCATCTCCCCCCCCCTCTTCCGGGGTTAGCTTTTT
GAACATTGTCTTCGTTCTTCCTTATGTTTAAATTTTCAATTCTTCTTTTT
ATTTGGTTTTTCATTACTTTGTCACGTGAAGGTGTTGAAATTCTACTCTT
TTGTTTTTCTTTTTTGATCAGAGTGTAAAAAGAAGCCGATTTACTTTCCA
ATAAAAACATTGGCTATTTCAATCACTTTTTTATAAGAACCACCTAGTCA
AACAGCCAAAGCTATTTGCATGAATATTCATGCTATTTATTGTAAGAATT
TCTAGGAAACACTCCGGTTTTTGCACCATAGTAGTGGTGAATCTTAAACA
ATATTTCTGTAGTCTGCGCGCATCCCC

Coding sequence (CDS) from alignment at sc0000683:61553..69379-

>TCONS_00028501 ID=TCONS_00028501|Name=TCONS_00028501|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000683:61553..69379- (Clytia hemisphaerica)
GTTCACTGAACTTCAAGAGATCTAGGCGTCTGGTGGTGTATTCAGTTACT
TGATCGGTGACGGAATGACTCGTGGTCCAGTCGTACGTATGGCGTCGGCT
CGTGAAGCGTGTCTGGTACGTGAGTGGATTGAAGAACAAGATAATTTCGT
CATTCTTTCAGAAGCATTCAATCAAAGTAGCAGGTTTATGGTGTCTGTTG
TGAAAATGTCATTGGTTACTGCACTATTCCTTTGGGCGTCGCGGGGCCTC
TGTTGCTAGACAACAACAAATTCTATGTTCCCATGGCAACAACTGAAGGT
TGTTTGGTTGCGAGTACTAACCGTGGTTGTTCAGCATTGAGGACGATCAT
TTGTGACAGCTGAGATTGGAAAAGAAGCGGACGCACTGGATGATCTACCG
TACGAAAATTACAATTATGAAAAGTAAATCTGTCAAACGAAGAAATCTTA
CAGCTTTGTAAAGAGAAGAAACTTGCTTTGCATAGCTTGGAAGCCACGCT
CAACGATCACAAGAGAGCTGTCGAAATAAGTCAGGTGTACATGAGTGTGG
TGATTTTCATGCTTGCATACAAATACTTATTACACGAAATGAAAAAGTCC
ATTCAGCACAAACCAAAATTCAACAACATGGCAAACTGCAATGTGCAAGT
TCCACCCCCTACAACTCAACACCGAATCAAAGAGACAGAGGTTCACTGAA
CTTCAAGAGATCTAGGCGTCTGGTGGTGTATTCAGTTACTTGATCGGTGA
CGGAATGACTCGTGGTCCAGTCGTACGTATGGCGTCGGCTCGTGAAGCGT
GTCTGGTACGTGAGTGGATTGAAGAACAAGATAATTTCGTCATTCTTTCA
GAAGCATTCAATCAAAGTAGCAGGTTTATGGTGTCTGTTGTGAAAATGTC
ATTGGTTACTGCACTATTCCTTTGGGCGTCGCGGGGCCTCTGTTGCTAGA
CAACAACAAATTCTATGTTCCCATGGCAACAACTGAAGGTTGTTTGGTTG
CGAGTACTAACCGTGGTTGTTCAGCATTGAGGACGATCATTTGTGACAGC
TGAGATTGGAAAAGAAGCGGACGCACTGGATGATCTACCGTACGAAAATT
ACAATTATGAAAAGTAAATCTGTCAAACGAAGAAATCTTACAGCTTTGTA
AAGAGAAGAAACTTGCTTTGCATAGCTTGGAAGCCACGCTCAACGATCAC
AAGAGAGCTGTCGAAATAAGTCAGGTGTACATGAGTGTGGTGATTTTCAT
GCTTGCATACAAATACTTATTACACGAAATGAAAAAGTCCATTCAGCACA
AACCAAAATTCAACAACATGGCAAACTGCAATGTGCAAGTTCCACCCCCT
ACAACTCAACACCGAATCAAAGAGACAGAGGTTCACTGAACTTCAAGAGA
TCTAGGCGTCTGGTGGTGTATTCAGTTACTTGATCGGTGACGGAATGACT
CGTGGTCCAGTCGTACGTATGGCGTCGGCTCGTGAAGCGTGTCTGGTACG
TGAGTGGATTGAAGAACAAGATAATTTCGTCATTCTTTCAGAAGCATTCA
ATCAAAGTAGCAGGTTTATGGTGTCTGTTGTGAAAATGTCATTGGTTACT
GCACTATTCCTTTGGGCGTCGCGGGGCCTCTGTTGCTAGACAACAACAAA
TTCTATGTTCCCATGGCAACAACTGAAGGTTGTTTGGTTGCGAGTACTAA
CCGTGGTTGTTCAGCATTGAGGACGATCATTTGTGACAGCTGAGATTGGA
AAAGAAGCGGACGCACTGGATGATCTACCGTACGAAAATTACAATTATGA
AAAGTAAATCTGTCAAACGAAGAAATCTTACAGCTTTGTAAAGAGAAGAA
ACTTGCTTTGCATAGCTTGGAAGCCACGCTCAACGATCACAAGAGAGCTG
TCGAAATAAGTCAGGTGTACATGAGTGTGGTGATTTTCATGCTTGCATAC
AAATACTTATTACACGAAATGAAAAAGTCCATTCAGCACAAACCAAAATT
CAACAACATGGCAAACTGCAATGTGCAAGTTCCACCCCCTACAACTCAAC
ACCGAATCAAAGAGACAGAGGTTCACTGAACTTCAAGAGATCTAGGCGTC
TGGTGGTGTATTCAGTTACTTGATCGGTGACGGAATGACTCGTGGTCCAG
TCGTACGTATGGCGTCGGCTCGTGAAGCGTGTCTGGTACGTGAGTGGATT
GAAGAACAAGATAATTTCGTCATTCTTTCAGAAGCATTCAATCAAAGTAG
CAGGTTTATGGTGTCTGTTGTGAAAATGTCATTGGTTACTGCACTATTCC
TTTGGGCGTCGCGGGGCCTCTGTTGCTAGACAACAACAAATTCTATGTTC
CCATGGCAACAACTGAAGGTTGTTTGGTTGCGAGTACTAACCGTGGTTGT
TCAGCATTGAGGACGATCATTTGTGACAGCTGAGATTGGAAAAGAAGCGG
ACGCACTGGATGATCTACCGTACGAAAATTACAATTATGAAAAGTAAATC
TGTCAAACGAAGAAATCTTACAGCTTTGTAAAGAGAAGAAACTTGCTTTG
CATAGCTTGGAAGCCACGCTCAACGATCACAAGAGAGCTGTCGAAATAAG
TCAGGTGTACATGAGTGTGGTGATTTTCATGCTTGCATACAAATACTTAT
TACACGAAATGAAAAAGTCCATTCAGCACAAACCAAAATTCAACAACATG
GCAAACTGCAATGTGCAAGTTCCACCCCCTACAACTCAACACCGAATCAA
AGAGACAGAGGTTCACTGAACTTCAAGAGATCTAGGCGTCTGGTGGTGTA
TTCAGTTACTTGATCGGTGACGGAATGACTCGTGGTCCAGTCGTACGTAT
GGCGTCGGCTCGTGAAGCGTGTCTGGTACGTGAGTGGATTGAAGAACAAG
ATAATTTCGTCATTCTTTCAGAAGCATTCAATCAAAGTAGCAGGTTTATG
GTGTCTGTTGTGAAAATGTCATTGGTTACTGCACTATTCCTTTGGGCGTC
GCGGGGCCTCTGTTGCTAGACAACAACAAATTCTATGTTCCCATGGCAAC
AACTGAAGGTTGTTTGGTTGCGAGTACTAACCGTGGTTGTTCAGCATTGA
GGACGATCATTTGTGACAGCTGAGATTGGAAAAGAAGCGGACGCACTGGA
TGATCTACCGTACGAAAATTACAATTATGAAAAGTAAATCTGTCAAACGA
AGAAATCTTACAGCTTTGTAAAGAGAAGAAACTTGCTTTGCATAGCTTGG
AAGCCACGCTCAACGATCACAAGAGAGCTGTCGAAATAAGTCAGGTGTAC
ATGAGTGTGGTGATTTTCATGCTTGCATACAAATACTTATTACACGAAAT
GAAAAAGTCCATTCAGCACAAACCAAAATTCAACAACATGGCAAACTGCA
ATGTGCAAGTTCCACCCCCTACAACTCAACACCGAATCAAAGAGACAGAG
GTTCACTGAACTTCAAGAGATCTAGGCGTCTGGTGGTGTATTCAGTTACT
TGATCGGTGACGGAATGACTCGTGGTCCAGTCGTACGTATGGCGTCGGCT
CGTGAAGCGTGTCTGGTACGTGAGTGGATTGAAGAACAAGATAATTTCGT
CATTCTTTCAGAAGCATTCAATCAAAGTAGCAGGTTTATGGTGTCTGTTG
TGAAAATGTCATTGGTTACTGCACTATTCCTTTGGGCGTCGCGGGGCCTC
TGTTGCTAGACAACAACAAATTCTATGTTCCCATGGCAACAACTGAAGGT
TGTTTGGTTGCGAGTACTAACCGTGGTTGTTCAGCATTGAGGACGATCAT
TTGTGACAGCTGAGATTGGAAAAGAAGCGGACGCACTGGATGATCTACCG
TACGAAAATTACAATTATGAAAAGTAAATCTGTCAAACGAAGAAATCTTA
CAGCTTTGTAAAGAGAAGAAACTTGCTTTGCATAGCTTGGAAGCCACGCT
CAACGATCACAAGAGAGCTGTCGAAATAAGTCAGGTGTACATGAGTGTGG
TGATTTTCATGCTTGCATACAAATACTTATTACACGAAATGAAAAAGTCC
ATTCAGCACAAACCAAAATTCAACAACATGGCAAACTGCAATGTGCAAGT
TCCACCCCCTACAACTCAACACCGAATCAAAGAGACAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016150XLOC_016150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028501-proteinTCONS_00028501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028501-exon-sc0000683-1575043694:69219..69379TCONS_00028501-exon-sc0000683-1575043694:69219..69379Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:68633..68738TCONS_00028501-exon-sc0000683-1575043694:68633..68738Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:67820..67901TCONS_00028501-exon-sc0000683-1575043694:67820..67901Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:67036..67194TCONS_00028501-exon-sc0000683-1575043694:67036..67194Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:66273..66430TCONS_00028501-exon-sc0000683-1575043694:66273..66430Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:65421..65526TCONS_00028501-exon-sc0000683-1575043694:65421..65526Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:64773..64879TCONS_00028501-exon-sc0000683-1575043694:64773..64879Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:64425..64488TCONS_00028501-exon-sc0000683-1575043694:64425..64488Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1575043694:61553..64063TCONS_00028501-exon-sc0000683-1575043694:61553..64063Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:69219..69379TCONS_00028501-exon-sc0000683-1510915933:69219..69379Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:68633..68738TCONS_00028501-exon-sc0000683-1510915933:68633..68738Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:67820..67901TCONS_00028501-exon-sc0000683-1510915933:67820..67901Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:67036..67194TCONS_00028501-exon-sc0000683-1510915933:67036..67194Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:66273..66430TCONS_00028501-exon-sc0000683-1510915933:66273..66430Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:65421..65526TCONS_00028501-exon-sc0000683-1510915933:65421..65526Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:64773..64879TCONS_00028501-exon-sc0000683-1510915933:64773..64879Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:64425..64488TCONS_00028501-exon-sc0000683-1510915933:64425..64488Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1510915933:61553..64063TCONS_00028501-exon-sc0000683-1510915933:61553..64063Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:69219..69379TCONS_00028501-exon-sc0000683-1491911889:69219..69379Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:68633..68738TCONS_00028501-exon-sc0000683-1491911889:68633..68738Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:67820..67901TCONS_00028501-exon-sc0000683-1491911889:67820..67901Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:67036..67194TCONS_00028501-exon-sc0000683-1491911889:67036..67194Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:66273..66430TCONS_00028501-exon-sc0000683-1491911889:66273..66430Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:65421..65526TCONS_00028501-exon-sc0000683-1491911889:65421..65526Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:64773..64879TCONS_00028501-exon-sc0000683-1491911889:64773..64879Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:64425..64488TCONS_00028501-exon-sc0000683-1491911889:64425..64488Clytia hemisphaericaexon
TCONS_00028501-exon-sc0000683-1491911889:61553..64063TCONS_00028501-exon-sc0000683-1491911889:61553..64063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:61553..69379 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002202HMG_CoA_Rdtase
IPR023282HMG_CoA_Rdtase_N
IPR023074HMG_CoA_Rdtase_cat
IPR009029HMG_CoA_Rdtase_sub-bd_dom
IPR009023HMG_CoA_Rdtase_NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0015936coenzyme A metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004420hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0050662coenzyme binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015936 coenzyme A metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Blast
[Close]
BLAST of TCONS_00028501 vs. Swiss-Prot (Human)
Match: HMDH (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.387e-88
Identity = 141/261 (54.02%), Postives = 191/261 (73.18%), Query Frame = 2 
Query:  167 LSNEEILQLCKEKKLALHSLEATLNDHKRAVEIRRSFVTAEIGKEADALDDLPYENYNYEKVYGVCCENVIGYCTIPLGVAGPLLLDNNKFYVPMATTEGCLVASTNRGCSALRASGGVFSYLIGDGMTRGPVVRMASAREACLVREWIEEQDNFVILSEAFNQSSRFTELQEI*CAMAGKLLFLRFKASTGDAMGMNMVSKGTEHALKYLKIQFPSMEVVSLSGNYCTDKKPSAINWIDGRGKGVICEATIPGEIVRKLL 949
            LS+ EI+QL   K +  + LE  +  H+R V IRR  ++ ++  E  +L  LPY +YNY  V G CCENVIGY  IP+GVAGPL LD  +F VPMATTEGCLVASTNRGC A+   GG  S ++ DGMTRGPVVR+  A ++  V+ W+E  + F ++ EAF+ +SRF  LQ++  ++AG+ L++RF++ +GDAMGMNM+SKGTE AL  L   FP M+++++SGNYCTDKKP+AINWI+GRGK V+CEA IP ++VR++L
Sbjct:  462 LSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLS-EPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVL 721
The following BLAST results are available for this feature:
BLAST of TCONS_00028501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMDH1.387e-8854.023-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
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