TCONS_00028420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028420
Unique NameTCONS_00028420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028420 ID=TCONS_00028420|Name=TCONS_00028420|organism=Clytia hemisphaerica|type=transcript|length=874bp
CTGCAACACTGGTTTAAAGGTTGAAATTATGTCGTTTCTAACGTAAAGTG
CTACTCCTCCACTGTGCCgaccatatttctttttggtttGTGATCTATCA
GCTCTAATAATGAAGTAGTCGTTAATTTCAACTTCTGCATCTTTGTGATC
AGCAAGCCACGTCTCAGTTAGAGcgatgaaaagtgaatttttctcatgTA
AAATATCACTTATAAATGGAACAGATGATTGGACAGTTAATGGTTTTAGT
GCTTGAATGTTGAGTAGCGTGAATGATTCTAAGCTTGCATCATATGCTGG
TTGTGCATGTGGTGTTGAAAGATTGTTTGAGTTGaccattggttgaaatt
tgggaCTTGATTCCACTTGGTGGTGGTTGAGGTTGATTTTTGTTCATCTC
TGCAAACTTTTTGTCCATTATTGTCTGCAGAATcttgtttttcagatttt
ggaTGAGTATTAGAAAATCCCTCTCCTTATCACTGGCATCAGGAATTTCG
CCAGGGTCTGTCAAATGTATATCTTTCCTGTATTTTAACGAATTCTCAGT
TAGTGTTCCCTTGACATGTAAAAATTTGCATTACATCCCTTTGGTTTTTT
ATTTCCATGTCTCAAAAGTTTTTTGTAAGCTTGGGGGTGCTTGTACTGAC
ATTTTTTACCTTTTATACCAAACTGACAGTTCCCTCTCAAATAATATTTG
CACATTATATCCTTCTTCTCTATTGGATGCTCAGTACCAATATTTAAATG
TTGTTCGGCTTCTCTGGCATTTTCGAGTTTATTACTTTGAGCATTTAGTG
AAATTTGAGCTACTGCTTTTGAGAAGTTCTTGTCGATAACATTAAGTTCA
CAACTCTGGCAGATATAGTGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00028420-protein

>TCONS_00028420-protein ID=TCONS_00028420-protein|Name=TCONS_00028420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MVNSNNLSTPHAQPAYDASLESFTLLNIQALKPLTVQSSVPFISDILHEK
NSLFIALTETWLADHKDAEVEINDYFIIRADRSQTKKKYGRHSGGVALYV
RNDIISTFKPVLQ
Run BLAST on NCBI

transcript from alignment at sc0000676:134978..135851

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028420 ID=TCONS_00028420|Name=TCONS_00028420|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0000676:134978..135851 (Clytia hemisphaerica)
CTTCCACTATATCTGCCAGAGTTGTGAACTTAATGTTATCGACAAGAACT
TCTCAAAAGCAGTAGCTCAAATTTCACTAAATGCTCAAAGTAATAAACTC
GAAAATGCCAGAGAAGCCGAACAACATTTAAATATTGGTACTGAGCATCC
AATAGAGAAGAAGGATATAATGTGCAAATATTATTTGAGAGGGAACTGTC
AGTTTGGTATAAAAGGTAAAAAATGTCAGTACAAGCACCCCCAAGCTTAC
AAAAAACTTTTGAGACATGGAAATAAAAAACCAAAGGGATGTAATGCAAA
TTTTTACATGTCAAGGGAACACTAACTGAGAATTCGTTAAAATACAGGAA
AGATATACATTTGACAGACCCTGGCGAAATTCCTGATGCCAGTGATAAGG
AGAGGGATTTTCTAATACTCAtccaaaatctgaaaaacaagATTCTGCAG
ACAATAATGGACAAAAAGTTTGCAGAGATGAACAAAAATCAACCTCAACC
ACCACCAAGTGGAATCAAGtcccaaatttcaaccaatggtCAACTCAAAC
AATCTTTCAACACCACATGCACAACCAGCATATGATGCAAGCTTAGAATC
ATTCACGCTACTCAACATTCAAGCACTAAAACCATTAACTGTCCAATCAT
CTGTTCCATTTATAAGTGATATTTTAcatgagaaaaattcacttttcatc
gCTCTAACTGAGACGTGGCTTGCTGATCACAAAGATGCAGAAGTTGAAAT
TAACGACTACTTCATTATTAGAGCTGATAGATCACaaaccaaaaagaaat
atggtcGGCACAGTGGAGGAGTAGCACTTTACGTTAGAAACGACATAATT
TCAACCTTTAAACCAGTGTTGCAG

Coding sequence (CDS) from alignment at sc0000676:134978..135851

>TCONS_00028420 ID=TCONS_00028420|Name=TCONS_00028420|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000676:134978..135851 (Clytia hemisphaerica)
atggtCAACTCAAACAATCTTTCAACACCACATGCACAACCAGCATATGA
TGCAAGCTTAGAATCATTCACGCTACTCAACATTCAAGCACTAAAACCAT
TAACTGTCCAATCATCTGTTCCATTTATAAGTGATATTTTAcatgagaaa
aattcacttttcatcgCTCTAACTGAGACGTGGCTTGCTGATCACAAAGA
TGCAGAAGTTGAAATTAACGACTACTTCATTATTAGAGCTGATAGATCAC
aaaccaaaaagaaatatggtcGGCACAGTGGAGGAGTAGCACTTTACGTT
AGAAACGACATAATTTCAACCTTTAAACCAGTGTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016101XLOC_016101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028420-exon-sc0000676-1491911889:134978..135851TCONS_00028420-exon-sc0000676-1491911889:134978..135851Clytia hemisphaericaexon
TCONS_00028420-exon-sc0000676-1510915933:134978..135851TCONS_00028420-exon-sc0000676-1510915933:134978..135851Clytia hemisphaericaexon
TCONS_00028420-exon-sc0000676-1575043694:134978..135851TCONS_00028420-exon-sc0000676-1575043694:134978..135851Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028420-proteinTCONS_00028420-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:134978..135851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615454	1.07653	0.749736	0.776639	1.09739	0.759605	0.685898	0.868422	0.580176	0.946671	0.234141	0.77869	1.31751	0.871878	0.484702	0.50697	0.640794	0.504157	0.874475	0.218568	0.86429	1.03124	0.515118	0.389287	0.178226	1.3884	0.41453	0.271245	0.31959	0.14097
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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