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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028362 ID=TCONS_00028362|Name=TCONS_00028362|organism=Clytia hemisphaerica|type=transcript|length=3876bpRun BLAST on NCBI protein sequence of TCONS_00028362-protein >TCONS_00028362-protein ID=TCONS_00028362-protein|Name=TCONS_00028362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp MGIDSDRFAYGIPQDAHCFLCCSVLECPVEIVECGHYFCLGCLEEWREKHRun BLAST on NCBI transcript from alignment at sc0000675:104954..121526+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028362 ID=TCONS_00028362|Name=TCONS_00028362|organism=Clytia hemisphaerica|type=transcript|length=16573bp|location=Sequence derived from alignment at sc0000675:104954..121526+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000675:104954..121526+ >TCONS_00028362 ID=TCONS_00028362|Name=TCONS_00028362|organism=Clytia hemisphaerica|type=CDS|length=27459bp|location=Sequence derived from alignment at sc0000675:104954..121526+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028362 vs. Swiss-Prot (Human)
Match: PZRN3 (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.338e-30 Identity = 98/348 (28.16%), Postives = 152/348 (43.68%), Query Frame = 2
Query: 134 MGIDSDRFAYGIPQDAHCFLCCSVLECPVEIVECGHYFCLGCLEEWREKHDPEEFTCP-YCGIALFEDSYRKSTLLWNLIQNMNVNCKHKSDGCDVVYKYGFESLHEEVCVF-----QQXXXXXXXXXXXXXXXXXEKC---PTCKTTLNCSI---------NSHDCVKELAAQVKQQKALLTNLEHENQRLVYKLSTCEKRFLEERTEMESQYYIETLRFNKEIRELRTRVAHFQGEMGVQSGQF--EQEEMKINLEKLNGSLGFNIIGGLSKTN-----SSAGIFVSRVAEGGAADQPGKLVLHDQILEVDHKDLRQATHEMAVDAFRAAGNPVKMLIKRQVRKMK 1102
MG + DRF + D C LC VLE P+ CGH FC GC+ W +E +CP C L L LI +++ C + + GC V K H E C F + D + + C P + C + H C + L A +A L L ++ + EK + + + + + LR+ K+ E R+ + G E + + + L + +GSLGFNIIGG + SS GIFVS++ + G A + G L +HD+I+EV+ +DL +ATH+ AV+AF+ A P+ + + R+ + K
Sbjct: 1 MGFELDRFDGDVDPDLKCALCHKVLEDPL-TTPCGHVFCAGCVLPWVV----QEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQVLLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGALHKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTK 343 The following BLAST results are available for this feature:
BLAST of TCONS_00028362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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