TCONS_00028362-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028362-protein
Unique NameTCONS_00028362-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1016

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028362-protein ID=TCONS_00028362-protein|Name=TCONS_00028362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp
MGIDSDRFAYGIPQDAHCFLCCSVLECPVEIVECGHYFCLGCLEEWREKH
DPEEFTCPYCGIALFEDSYRKSTLLWNLIQNMNVNCKHKSDGCDVVYKYG
FESLHEEVCVFQQNSKNNNNNNGDASTNENEKCPTCKTTLNCSINSHDCV
KELAAQVKQQKALLTNLEHENQRLVYKLSTCEKRFLEERTEMESQYYIET
LRFNKEIRELRTRVAHFQGEMGVQSGQFEQEEMKINLEKLNGSLGFNIIG
GLSKTNSSAGIFVSRVAEGGAADQPGKLVLHDQILEVDHKDLRQATHEMA
VDAFRAAGNPVKMLIKRQVRKMKPNHVSTQTETVEGKSEYIRHPIDIEES
PKKSSKGWFDPMSIVPTDLSSNENKEYDSAYDTLNKSSRYSQETSTLDGE
NTDDDTTNTGVESSATEQTLTHFKDSVSESSSSKRHSTFLVVSDKENFDM
SGQTTEGEADFEFEYVELVLRKDHGKIGVNLYYDETDASVYVGDVEDNSP
ADLSGKIMVGDQIVQINQRQVNNVEQAHQMFEANDVITLVVARAVFENNT
DMYDEEAEETDLDMLDCILEENESVASKASSLTYASSASSKSSDKNSPPQ
CLSPPVIHEYSNEIIRKGGESTNHKALENSPSSGANKESKLKNPLKNFMK
GKLSGGTQKDKRAGSQSDDSLDFNKLPRCDSNSSSNNSSKSQRSKEGTTD
AQHRSNSDVMKARLKEQKQQSKLKAYMDSPSINRSKQPAHVSLFQAPYMI
NTGAHIPVSYHGVSNMAPVYANQPPRFSPTPLHYQQVGQQRHNMSGSVSS
LRSAMKNSQMNNGYGIPGSAVRHEKTRTHKRVSIDPHPGWNETEKRVWEE
FKIIQSMEKENGGGGAPAPTEAALDKNGDVEAEWRVRRSKDGKHIYIKKS
TNSTRSKVLKDRAQQIDNERCGLTTDDDAFTVYQGQYWSRDQRKKQLSRH
NERRKRLVQKAELKATYENKTEKEIAEMAQRKMTLPVFDNFVTIEEILSQ
RNRSGVFSGPVHVTTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016072XLOC_016072Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028362TCONS_00028362Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..170
NoneNo IPR availableGENE3D2.30.42.10coord: 446..561
e-value: 4.6E-15
score: 55.0
NoneNo IPR availableGENE3D2.30.42.10coord: 151..317
e-value: 1.5E-19
score: 69.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 620..709
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 382..417
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 241..316
e-value: 1.08798E-17
score: 78.7626
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 467..542
e-value: 2.30733E-10
score: 57.5767
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 12..86
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 242..319
e-value: 6.9E-19
score: 78.7
coord: 475..545
e-value: 1.2E-8
score: 44.7
IPR001478PDZ domainPFAMPF00595PDZcoord: 235..316
e-value: 8.5E-14
score: 51.6
coord: 471..541
e-value: 1.9E-9
score: 37.6
IPR001478PDZ domainPROSITEPS50106PDZcoord: 465..545
score: 12.908
IPR001478PDZ domainPROSITEPS50106PDZcoord: 234..319
score: 18.757
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 462..547
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 221..322
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 18..60
e-value: 1.6E-5
score: 24.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 4..94
e-value: 2.8E-13
score: 49.1
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 34..43
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..60
score: 11.766
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 18..60
e-value: 8.09382E-10
score: 55.1444

Blast
[Close]
BLAST of TCONS_00028362-protein vs. Swiss-Prot (Human)
Match: PZRN3 (E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.014e-32
Identity = 99/349 (28.37%), Postives = 155/349 (44.41%), Query Frame = 0 
Query:    1 MGIDSDRFAYGIPQDAHCFLCCSVLECPVEIVECGHYFCLGCLEEWREKHDPEEFTCPY-CGIALFEDSYRKSTLLWNLIQNMNVNCKHKSDGCDVVYKYGFESLHEEVCVFQQNSKNNNNNNG------DASTNENEKC---PTCKTTLNCSI---------NSHDCVKELAAQVKQQKALLTNLEHENQRLVYKLSTCEKRFLEERTEMESQYYIETLRFNKEIRELRTRVAHFQGEMGVQSGQF--EQEEMKINLEKLNGSLGFNIIGGLSKTN-----SSAGIFVSRVAEGGAADQPGKLVLHDQILEVDHKDLRQATHEMAVDAFRAAGNPVKMLIKRQVRKMK 323
            MG + DRF   +  D  C LC  VLE P+    CGH FC GC+  W      +E +CP  C   L          L  LI  +++ C + + GC  V K      H E C F   ++  +   G      D   +  + C   P  +    C +           H C + L A     +A L  L    ++   +    EK  + +    + +  +  LR+ K+  E   R+      +    G    E + + + L + +GSLGFNIIGG    +     SS GIFVS++ + G A + G L +HD+I+EV+ +DL +ATH+ AV+AF+ A  P+ + + R+  + K
Sbjct:    1 MGFELDRFDGDVDPDLKCALCHKVLEDPL-TTPCGHVFCAGCVLPWVV----QEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAP-ARCRHAGCGQVLLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGALHKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTK 343
The following BLAST results are available for this feature:
BLAST of TCONS_00028362-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PZRN31.014e-3228.37E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens... [more]
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