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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028337 ID=TCONS_00028337|Name=TCONS_00028337|organism=Clytia hemisphaerica|type=transcript|length=1568bp
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGtagatttctt
tcaaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAA
AGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAA
CATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATT
TTAAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTCACTTA
ATTACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATTTCCAC
ATGTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGTCCCCC
CCCCGGATGAAtcatgaattttattttcaatatgttttaataattgtttt
tattacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAGGAATG
CTTGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCTTTGAA
TGGGCTTTGAAtagttttgattgttttaagttgtatatttatttttagta
tATTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAATATGG
TTGGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCAAAAAT
ATTGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAGAGTCA
ACCCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGTCAAGT
ATTCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAAAATCA
TACCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAATGATT
TTCAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGCAGCAT
GGACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATtataaaa
ttttggaaatacatatttctaaattttaatagTCCCTTTTCTGAAAGTGA
AAGAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgcaTCTG
TCTCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAAGGCCT
GGTAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAATCATGG
CCTTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATATTCTG
ACCACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTGATCAA
AAAtgaacaagacgacttaaagtcgaaaatttcgcataatacttgaacat
caacgacgaagacgcgtgaaacgtgactcctgcagcattatgcattttga
atgaagcgttacacaaaatatacacaatgcattgtacacacaggtcatag
ataccctgtttttttaatgaaaaatctcaatccattaaaaaaaagattcc
tttaAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaaaatct
ttcaattcagaataattcagagaactgcaatatacttgagaaaaataatt
taaaatttttttgaaaac Run BLAST on NCBI transcript from alignment at sc0000674:164384..166431+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028337 ID=TCONS_00028337|Name=TCONS_00028337|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at sc0000674:164384..166431+ (Clytia hemisphaerica)
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACTT
GTTTATTTACATCCACCAGAACTCCCTATAAAATACATTTCTGTCAGTGA
TGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGCCTCT
TGCAAATCATATCTAATGTAAAGTTACCAAACTGTAAGGGATTGATTAAT
CATATTCCCAAACCTGTTCTATGTTTTGTTCAGAGCTTTGTATACGATGC
CACATAGGGTAaatatcaattttcaattatttcatGGCTTTGTTTCAAAA
TAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGAT
CGATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTCATC
TTGTTCCGaagatttctttgaaaaattgatggttttttttagcagatttc
tttcaaacaaagATGGTACAGCCATTATAACACCTTCAACTATGAATGCA
AAAGGGNCGTTTTTTTTTAgtagatttctttcaaacaaagATGGTACAGC
CATAATAACACCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTATC
CAACCACGTTTGGGACCTGCAAATCAAAAACATACAACCAAAATTATCAT
GGGAGATTATCGACCACGCCCGCTCGTATTTTAAAGGCTTGGTAAACTGC
AACATCTGTCTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATCT
CGTAAACAAAAGATCAGAACTTATTTCCACATGTCGCCATAACAACAGAT
TTAATCTGAAGAACTTCAAATTGGTCCCCCCCCCGGATGAAtcatgaatt
ttattttcaatatgttttaataattgtttttattacagTTTTATTGCACA
AATTATCCAGTTTTTCACATTCAAGGAATGCTTGAAAGGGATTAGttcgt
caaaaaaaaggttggtATCATAGCTTTGAATGGGCTTTGAAtagttttga
ttgttttaagttgtatatttatttttagtatATTTGTTTTATATCAACAA
ACATATCAATCAAAAATATACACAATATGGTTGGTTTGATGGGTTTGATT
CCTACTAGCATGTTCGTCTTCACCAAAAATATTGTCAAGCAGTCTGGATT
AAGAGCACCATGAACGCTTGCGCAGAGTCAACCCAGCGCTGCCCAAGAGA
GCTGGATGAATTGGCAGATCGCAGTCAAGTATTCAAACCTTCCAATGTCA
ACAACAGACCCTGCCACCCTTTCAAAATCATACCAGCCGTCCAAAGAACA
ACAAACACTATCTTTAACTTATCAATGATTTTCAGAATCCAGATGGCACA
TGTAAGGATAGACCAGGAAAATCGCAGCATGGACATAAGATGAAAGGTTA
TGCTGAACTTGACAACACAGGATtataaaattttggaaatacatatttct
aaattttaatagTCCCTTTTCTGAAAGTGAAAGAAATGACTTGGGAggta
atttattcaaaaaaacaaacaatgcaTCTGTCTCCTATTAGGAATGCATT
AGTCGACAAGAGGTGACCAAGCAAAGGCCTGGTAATATGATGTTGTTTTC
GCCTAAAAAACCACATAACAAAAATCATGGCCTTTGATAAAAGTTACAAA
ATAGACATACAAATAGCATTTCATATTCTGACCACAAGATGTGTTtcaca
aaagtttcaaaactttgatgATGTGATCAAAAAtgaacaagacgacttaa
agtcgaaaatttcgcataatacttgaacatcaacgacgaagacgcgtgaa
acgtgactcctgcagcattatgcattttgaatgaagcgttacacaaaata
tacacaatgcattgtacacacaggtcatagataccctgtttttttaatga
aaaatctcaatccattaaaaaaaagattcctttaAAAATGCGACTTAAGA
ATTCTattctataaagcgtaaacaaaatctttcaattcagaataattcag
agaactgcaatatacttgagaaaaataatttaaaatttttttgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028337-exon-sc0000674-1491911889:164384..164423 | TCONS_00028337-exon-sc0000674-1491911889:164384..164423 | Clytia hemisphaerica | exon |
| TCONS_00028337-exon-sc0000674-1510915933:164384..164423 | TCONS_00028337-exon-sc0000674-1510915933:164384..164423 | Clytia hemisphaerica | exon |
| TCONS_00028337-exon-sc0000674-1575043694:164384..164423 | TCONS_00028337-exon-sc0000674-1575043694:164384..164423 | Clytia hemisphaerica | exon |
| TCONS_00028337-exon-sc0000674-1491911889:164904..166431 | TCONS_00028337-exon-sc0000674-1491911889:164904..166431 | Clytia hemisphaerica | exon |
| TCONS_00028337-exon-sc0000674-1510915933:164904..166431 | TCONS_00028337-exon-sc0000674-1510915933:164904..166431 | Clytia hemisphaerica | exon |
| TCONS_00028337-exon-sc0000674-1575043694:164904..166431 | TCONS_00028337-exon-sc0000674-1575043694:164904..166431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000674 | supercontig | sc0000674:164384..166431 + |
Blast
The following BLAST results are available for this feature:
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