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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028336 ID=TCONS_00028336|Name=TCONS_00028336|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGatttctttc
aaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAG
GGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAACA
TACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATTTT
AAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTCACTTAAT
TACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATTTCCACAT
GTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGTCCCCCCC
CCGGATGAAtcatgaattttattttcaatatgttttaataattgttttta
ttacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAGGAATGCT
TGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCTTTGAATG
GGCTTTGAAtagttttgattgttttaagttgtatatttatttttagtatA
TTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAATATGGTT
GGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCAAAAATAT
TGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAGAGTCAAC
CCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGTCAAGTAT
TCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAAAATCATA
CCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAATGATTTT
CAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGCAGCATGG
ACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATtataaaatt
ttggaaatacatatttctaaattttaatagTCCCTTTTCTGAAAGTGAAA
GAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgcaTCTGTC
TCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAAGGCCTGG
TAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAATCATGGCC
TTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATATTCTGAC
CACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTGATCAAAA
Atgaacaagacgacttaaagtcgaaaatttcgcataatacttgaacatca
acgacgaagacgcgtgaaacgtgactcctgcagcattatgcattttgaat
gaagcgttacacaaaatatacacaatgcattgtacacacaggtcatagat
accctgtttttttaatgaaaaatctcaatccattaaaaaaaagattcctt
taAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaaaatcttt
caattcagaataattcagagaactgcaatatacttgagaaaaataattta
aaatttttttgaaaac Run BLAST on NCBI transcript from alignment at sc0000674:164383..166431+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028336 ID=TCONS_00028336|Name=TCONS_00028336|organism=Clytia hemisphaerica|type=transcript|length=2049bp|location=Sequence derived from alignment at sc0000674:164383..166431+ (Clytia hemisphaerica)
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACT
TGTTTATTTACATCCACCAGAACTCCCTATAAAATACATTTCTGTCAGTG
ATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGCCTC
TTGCAAATCATATCTAATGTAAAGTTACCAAACTGTAAGGGATTGATTAA
TCATATTCCCAAACCTGTTCTATGTTTTGTTCAGAGCTTTGTATACGATG
CCACATAGGGTAaatatcaattttcaattatttcatGGCTTTGTTTCAAA
ATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGA
TCGATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTCAT
CTTGTTCCGaagatttctttgaaaaattgatggttttttttagcagattt
ctttcaaacaaagATGGTACAGCCATTATAACACCTTCAACTATGAATGC
AAAAGGGNCGTTTTTTTTTAgtagatttctttcaaacaaagATGGTACAG
CCATAATAACACCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTAT
CCAACCACGTTTGGGACCTGCAAATCAAAAACATACAACCAAAATTATCA
TGGGAGATTATCGACCACGCCCGCTCGTATTTTAAAGGCTTGGTAAACTG
CAACATCTGTCTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATC
TCGTAAACAAAAGATCAGAACTTATTTCCACATGTCGCCATAACAACAGA
TTTAATCTGAAGAACTTCAAATTGGTCCCCCCCCCGGATGAAtcatgaat
tttattttcaatatgttttaataattgtttttattacagTTTTATTGCAC
AAATTATCCAGTTTTTCACATTCAAGGAATGCTTGAAAGGGATTAGttcg
tcaaaaaaaaggttggtATCATAGCTTTGAATGGGCTTTGAAtagttttg
attgttttaagttgtatatttatttttagtatATTTGTTTTATATCAACA
AACATATCAATCAAAAATATACACAATATGGTTGGTTTGATGGGTTTGAT
TCCTACTAGCATGTTCGTCTTCACCAAAAATATTGTCAAGCAGTCTGGAT
TAAGAGCACCATGAACGCTTGCGCAGAGTCAACCCAGCGCTGCCCAAGAG
AGCTGGATGAATTGGCAGATCGCAGTCAAGTATTCAAACCTTCCAATGTC
AACAACAGACCCTGCCACCCTTTCAAAATCATACCAGCCGTCCAAAGAAC
AACAAACACTATCTTTAACTTATCAATGATTTTCAGAATCCAGATGGCAC
ATGTAAGGATAGACCAGGAAAATCGCAGCATGGACATAAGATGAAAGGTT
ATGCTGAACTTGACAACACAGGATtataaaattttggaaatacatatttc
taaattttaatagTCCCTTTTCTGAAAGTGAAAGAAATGACTTGGGAggt
aatttattcaaaaaaacaaacaatgcaTCTGTCTCCTATTAGGAATGCAT
TAGTCGACAAGAGGTGACCAAGCAAAGGCCTGGTAATATGATGTTGTTTT
CGCCTAAAAAACCACATAACAAAAATCATGGCCTTTGATAAAAGTTACAA
AATAGACATACAAATAGCATTTCATATTCTGACCACAAGATGTGTTtcac
aaaagtttcaaaactttgatgATGTGATCAAAAAtgaacaagacgactta
aagtcgaaaatttcgcataatacttgaacatcaacgacgaagacgcgtga
aacgtgactcctgcagcattatgcattttgaatgaagcgttacacaaaat
atacacaatgcattgtacacacaggtcatagataccctgtttttttaatg
aaaaatctcaatccattaaaaaaaagattcctttaAAAATGCGACTTAAG
AATTCTattctataaagcgtaaacaaaatctttcaattcagaataattca
gagaactgcaatatacttgagaaaaataatttaaaatttttttgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028336-exon-sc0000674-1491911889:164383..164423 | TCONS_00028336-exon-sc0000674-1491911889:164383..164423 | Clytia hemisphaerica | exon |
| TCONS_00028336-exon-sc0000674-1510915933:164383..164423 | TCONS_00028336-exon-sc0000674-1510915933:164383..164423 | Clytia hemisphaerica | exon |
| TCONS_00028336-exon-sc0000674-1575043694:164383..164423 | TCONS_00028336-exon-sc0000674-1575043694:164383..164423 | Clytia hemisphaerica | exon |
| TCONS_00028336-exon-sc0000674-1491911889:164907..166431 | TCONS_00028336-exon-sc0000674-1491911889:164907..166431 | Clytia hemisphaerica | exon |
| TCONS_00028336-exon-sc0000674-1510915933:164907..166431 | TCONS_00028336-exon-sc0000674-1510915933:164907..166431 | Clytia hemisphaerica | exon |
| TCONS_00028336-exon-sc0000674-1575043694:164907..166431 | TCONS_00028336-exon-sc0000674-1575043694:164907..166431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000674 | supercontig | sc0000674:164383..166431 + |
Blast
The following BLAST results are available for this feature:
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