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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028308 ID=TCONS_00028308|Name=TCONS_00028308|organism=Clytia hemisphaerica|type=transcript|length=946bpRun BLAST on NCBI transcript from alignment at sc0000673:39958..43741- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028308 ID=TCONS_00028308|Name=TCONS_00028308|organism=Clytia hemisphaerica|type=transcript|length=3784bp|location=Sequence derived from alignment at sc0000673:39958..43741- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028308 vs. Swiss-Prot (Human)
Match: FLNB (Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 6.660e-25 Identity = 71/186 (38.17%), Postives = 94/186 (50.54%), Query Frame = 2
Query: 230 VVGGDGIKEGTAGQPVTFHLDGR---NAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 778
+ G D +E T F +D R G + PSG T ++DN DGTY V+ E GLH VEV +D PIP SPF V + + +V+A GPGL N+ N F V ++GAG G + + + GP + K+ RDN KD S + Y P PG Y NI + HI GSPF + V
Sbjct: 1238 IEGKDVFREATT----DFTVDSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQPSRVQAQGPGLKEAFTNKPN-VFTVVTRGAGIGGLGITVEGPSES-KINC-RDN-KDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPV 1415 HSP 2 Score: 104.76 bits (260), Expect = 3.373e-24 Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 2
Query: 281 FHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 778
F +D + AG G+L + P G V D DG Y + S PG +++ + W G IP SPF V++ M+KVRA GPGL GI+ + + +F V+S G+ G++ I GP A K+E Y D D S +V+Y P EPG Y +I DE I SP+ F+
Sbjct: 475 FKVDTKAAGSGELGVTMKGPKGLEELVKQKDFLDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAWGPGLHGGIVGR-SADFVVESIGSEVGSLGFAIEGPSQA-KIE-YNDQ-NDGSCDVKYWPKEPGEYAVHIMCDDEDIKDSPYMAFI 636 HSP 3 Score: 100.523 bits (249), Expect = 7.881e-23 Identity = 65/180 (36.11%), Postives = 94/180 (52.22%), Query Frame = 2
Query: 239 GDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 778
G G+KE +P F + R AG G L PS + + DNKDG+ + + PG + V + + G IPGSPF V + D KV+ GPGL SG+ + +F VDS AG ++VR+ GP+G + DN D + V Y PS+ G Y ++ ++DE I SPF++ V
Sbjct: 1335 GPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPS--ESKINCRDNKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPVKDVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDN-GDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKV 1511 HSP 4 Score: 93.9745 bits (232), Expect = 7.817e-21 Identity = 75/252 (29.76%), Postives = 112/252 (44.44%), Query Frame = 2
Query: 71 TYHLDKLYKV*GSFTIFVNAGTNHLTLS*FRFLVVFGGPGL*FYGTMTSTQSVVVGGDGIKE--GTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTY-VLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLL-SGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNE--QELNEW 808
TY ++ L KV G + V H++ S F V V G G++ A +P F + AG G + P G+ T +L+ D + Y +PG H V++ + G IP SPF+V++ +A + RA G GL G+ + +F+VD+K AG G + V + GPKG ++ +D D Y PS PG Y+ I W HI SPFE+ V Q++ W
Sbjct: 314 TYSVEYLPKVTGLHKVTVLFAGQHISKSPFEVSV---------DKAQGDASKVTAKGPGLEAVGNIANKPTYFDIYTAGAGVGDIGVEVEDPQGKNTVELLVEDKGNQVYRCVYKPMQPGPHVVKIFFAGDTIPKSPFVVQVGEACNPNACRASGRGLQPKGVRIRETTDFKVDTKAAGSGELGVTMKGPKGLEELVKQKDF-LDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAW 555 HSP 5 Score: 93.5893 bits (231), Expect = 1.219e-20 Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 2
Query: 104 GSFTIFVNAGTNHLTLS*FRFLVVFGGPGL*FYGTMTSTQSVVVGGDGIKEGTAGQPV-TFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLS-GIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEI 772
G + + + G H+ S FR V + V + G G+ G + + +F +D AG L R P G + V + DN DGT+TV S+ G + V V++ + IP SPF V+++ D KV A GPGL S G+ +F +D++ AG G + V+I +G K + DN KD + V Y P + G Y + + + I SP+ I
Sbjct: 1393 GDYDVNITYGGAHIPGSPFRVPV----------KDVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDN-KDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRI 1606 HSP 6 Score: 92.8189 bits (229), Expect = 2.090e-20 Identity = 59/193 (30.57%), Postives = 93/193 (48.19%), Query Frame = 2
Query: 227 VVVGGDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLL-SGIINQFNGNFQVDSK---GAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQ 793
VV G G++ G G+ +D AGPG L + SG V I +NKDGTY V G++T+ +++ G+ +P P V++ A D +++ GPG+ + + +F VDS+ G +K I P GA E + + D + V Y P E GL+ + + D I SPF++ V + Q
Sbjct: 1136 VVASGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSGA-STECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQ 1327 HSP 7 Score: 92.8189 bits (229), Expect = 2.127e-20 Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 2
Query: 311 GQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQELNEWR 811
G+++ PSG+ I DNKDGT TV +E GLH + +++ G IP SP + P+ V A+GPGL+ G+ N+ F + ++ AG G + + I GP K E+ + KD + V Y P+ PG Y+ + ++D+HI GSPF + + + ++ +
Sbjct: 1758 GEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFYV-NYPNSGSVSAYGPGLVYGVANK-TATFTIVTEDAGEGGLDLAIEGPS---KAEISCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSRRCSQVK 1919 HSP 8 Score: 90.5077 bits (223), Expect = 9.824e-20 Identity = 65/170 (38.24%), Postives = 95/170 (55.88%), Query Frame = 2
Query: 266 GQPVTFHLDGRNAG-PGQLSCRCRAPSGQMTYVLISD-NKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFE 769
G+ F +D R AG G+L +PS ++ L++ T E GL+ V+V +DG P+PGSP+ V PD KV+AHGPGL G++ + F +D+KGAG G + + + GP A K+E DN D + +V Y P++PG Y NI + + HI GSPF+
Sbjct: 959 GKDQEFTVDTRGAGGQGKLDVTILSPSRKVVPCLVTPVTGRENSTAKFIPREEGLYAVDVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGK-PAEFTIDTKGAGTGGLGLTVEGPCEA-KIEC-SDN-GDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFK 1124 HSP 9 Score: 90.1225 bits (222), Expect = 1.428e-19 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 2
Query: 263 AGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNE 790
A PV F +D R+AG G L+ + G+ ++ DNKDGTY V + G + + V + G IP SP+ +R Q D K A GPG+ S + F VD+K AG G + + P G +N +D + ++ Y ++PG Y + + I SPF + E
Sbjct: 1534 ASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRIRATQTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIEN-EDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMATDGE 1708 HSP 10 Score: 89.3521 bits (220), Expect = 2.303e-19 Identity = 70/233 (30.04%), Postives = 110/233 (47.21%), Query Frame = 2
Query: 104 GSFTIFVNAGTNHLTLS*FRFLVVFGGPGL*FYGTMTSTQSVVVGGDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQELN 802
G T+ V H+T S F+F V G G V GG G++ G AG P F + R AG G LS PS + D+K+G+ V A EPG + V ++++ + IP SP+LV ++ D + SG+ +F + GA G + ++H P GA + E + + VR+ P E G++T ++ ++ H+VGSPF++ V + Q N
Sbjct: 2163 GVHTVSVKYRGQHVTGSPFQFTVGPLGEG--------GAHKVRAGGPGLERGEAGVPAEFSIWTREAGAGGLSIAVEGPS--KAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPVIAPSDDARRLTVMSLQESGLKVNQPASFAIRLNGAK-GKIDAKVHSPSGAVE-ECHVSELEPDKYAVRFIPHENGVHTIDVKFNGSHVVGSPFKVRVGEPGQAGN 2383 HSP 11 Score: 79.7221 bits (195), Expect = 2.418e-16 Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 2
Query: 269 QPVTFHLDGRNAGPGQLSCRCRAPSG--QMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAP-DMKKVRAHGPGLLS-GIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAK 784
QP F +D +AG G + P G + V +K+ TY+V+ GLH V V + GQ I SPF V + +A D KV A GPGL + G I F + + GAG G + V + P+G VE+ ++ ++ Y P +PG + I+++ + I SPF + V +
Sbjct: 273 QPAKFTVDTISAGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVTGLHKVTVLFAGQHISKSPFEVSVDKAQGDASKVTAKGPGLEAVGNIANKPTYFDIYTAGAGVGDIGVEVEDPQGKNTVELLVEDKGNQVYRCVYKPMQPGPHVVKIFFAGDTIPKSPFVVQVGE 448 The following BLAST results are available for this feature:
BLAST of TCONS_00028308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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