TCONS_00028292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028292
Unique NameTCONS_00028292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028292 ID=TCONS_00028292|Name=TCONS_00028292|organism=Clytia hemisphaerica|type=transcript|length=941bp
TTACTGAACTCCTTATCACAAACACCACATTTATAGCGCTTTTCACCAAG
ATGTACAAGGGAATGCAAAGAAAGCAATGCATGcgttgagattttttttt
cacaaacacTGCATTTGTAAGGGGTTTTGCATCCATTGGTTTTCAAATGA
CTGTTGAATAAACGGCCATATTCAAACTCTTTCTCACAATCTGCACATTG
TTGAAGTTGTTTAAGCTCACCGTGTGTTGCAAAATGTCTTTGGAGAGTTG
GCAAATACATGAACCCTTTGCCGCAGATTTTACATAAGTGTTGTTTCTTA
TCTTTGAAAGTGTCAATAAACATTTGATCTTTacatttcaaagcaaacat
CTGCAGATCGCTAGAATTCTGCTTTCTTGGTGATGTTGAAGGATTGTTAG
CACTGTTGTTAATAATACAATCTAATTGATTTGGTACCTTGATTCCCTCT
GTTACCTGATTACAGTTTGACTTTTCAGGGGTGATAAAAACAAGCTTCCT
TTTGGTCTCTGGCCTCTcaacttcttcatttttaaggtgatATTGTGCAT
GGACAATCAAATTATttggaaattgaaatttctttccGCATACACTAcat
tgaaaaagtttcaaactatCATCAACATCAACCTGCTGCTGAAATATGTT
GGATTCTTGAAAACCTTTTCCGAAAACATCATATGCATATGGGTTTTCAC
CTTCATGAATTCGTAAATGAGTTTGTAACGTACAAGATTTCTTGAACTGC
TTCCCACAAACTTTGCAATCAAAATTGACAGTTTCAACAATTAAATTTTC
TGGTGTGGTATTGTGAATTTCTTCCCATTTTCTTTCCATTTTACGTGTCT
GCATTATTCTAACCAGCCTTACTCTAAATTAAACCATATTTTCAGCTTAG
ATtaaatctatctatctatatatcaAGTATTAAAAGGTCCT
Run BLAST on NCBI

protein sequence of TCONS_00028292-protein

>TCONS_00028292-protein ID=TCONS_00028292-protein|Name=TCONS_00028292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MQTRKMERKWEEIHNTTPENLIVETVNFDCKVCGKQFKKSCTLQTHLRIH
EGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCSVCGKKFQFPNNLI
VHAQYHLKNEEVERPETKRKLVFITPEKSNCNQVTEGIKVPNQLDCIINN
SANNPSTSPRKQNSSDLQMFALKCKDQMFIDTFKDKKQHLCKICGKGFMY
LPTLQRHFATHGELKQLQQCADCEKEFEYGRLFNSHLKTNGCKTPYKCSV
CEKKISTHALLSLHSLVHLGEKRYKCGVCDKEFS
Run BLAST on NCBI

transcript from alignment at sc0000672:185443..186383

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028292 ID=TCONS_00028292|Name=TCONS_00028292|organism=Clytia hemisphaerica|type=transcript|length=941bp|location=Sequence derived from alignment at sc0000672:185443..186383 (Clytia hemisphaerica)
AGGACCTTTTAATACTtgatatatagatagatagatttaATCTAAGCTGA
AAATATGGTTTAATTTAGAGTAAGGCTGGTTAGAATAATGCAGACACGTA
AAATGGAAAGAAAATGGGAAGAAATTCACAATACCACACCAGAAAATTTA
ATTGTTGAAACTGTCAATTTTGATTGCAAAGTTTGTGGGAAGCAGTTCAA
GAAATCTTGTACGTTACAAACTCATTTACGAATTCATGAAGGTGAAAACC
CATATGCATATGATGTTTTCGGAAAAGGTTTTCAAGAATCCAACATATTT
CAGCAGCAGGTTGATGTTGATGatagtttgaaactttttcaatgTAGTGT
ATGCggaaagaaatttcaatttccaaATAATTTGATTGTCCATGCACAAT
atcaccttaaaaatgaagaagttgAGAGGCCAGAGACCAAAAGGAAGCTT
GTTTTTATCACCCCTGAAAAGTCAAACTGTAATCAGGTAACAGAGGGAAT
CAAGGTACCAAATCAATTAGATTGTATTATTAACAACAGTGCTAACAATC
CTTCAACATCACCAAGAAAGCAGAATTCTAGCGATCTGCAGatgtttgct
ttgaaatgtAAAGATCAAATGTTTATTGACACTTTCAAAGATAAGAAACA
ACACTTATGTAAAATCTGCGGCAAAGGGTTCATGTATTTGCCAACTCTCC
AAAGACATTTTGCAACACACGGTGAGCTTAAACAACTTCAACAATGTGCA
GATTGTGAGAAAGAGTTTGAATATGGCCGTTTATTCAACAGTCATTTGAA
AACCAATGGATGCAAAACCCCTTACAAATGCAgtgtttgtgaaaaaaaaa
tctcaacgCATGCATTGCTTTCTTTGCATTCCCTTGTACATCTTGGTGAA
AAGCGCTATAAATGTGGTGTTTGTGATAAGGAGTTCAGTAA

Coding sequence (CDS) from alignment at sc0000672:185443..186383

>TCONS_00028292 ID=TCONS_00028292|Name=TCONS_00028292|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000672:185443..186383 (Clytia hemisphaerica)
ATGCAGACACGTAAAATGGAAAGAAAATGGGAAGAAATTCACAATACCAC
ACCAGAAAATTTAATTGTTGAAACTGTCAATTTTGATTGCAAAGTTTGTG
GGAAGCAGTTCAAGAAATCTTGTACGTTACAAACTCATTTACGAATTCAT
GAAGGTGAAAACCCATATGCATATGATGTTTTCGGAAAAGGTTTTCAAGA
ATCCAACATATTTCAGCAGCAGGTTGATGTTGATGatagtttgaaacttt
ttcaatgTAGTGTATGCggaaagaaatttcaatttccaaATAATTTGATT
GTCCATGCACAATatcaccttaaaaatgaagaagttgAGAGGCCAGAGAC
CAAAAGGAAGCTTGTTTTTATCACCCCTGAAAAGTCAAACTGTAATCAGG
TAACAGAGGGAATCAAGGTACCAAATCAATTAGATTGTATTATTAACAAC
AGTGCTAACAATCCTTCAACATCACCAAGAAAGCAGAATTCTAGCGATCT
GCAGatgtttgctttgaaatgtAAAGATCAAATGTTTATTGACACTTTCA
AAGATAAGAAACAACACTTATGTAAAATCTGCGGCAAAGGGTTCATGTAT
TTGCCAACTCTCCAAAGACATTTTGCAACACACGGTGAGCTTAAACAACT
TCAACAATGTGCAGATTGTGAGAAAGAGTTTGAATATGGCCGTTTATTCA
ACAGTCATTTGAAAACCAATGGATGCAAAACCCCTTACAAATGCAgtgtt
tgtgaaaaaaaaatctcaacgCATGCATTGCTTTCTTTGCATTCCCTTGT
ACATCTTGGTGAAAAGCGCTATAAATGTGGTGTTTGTGATAAGGAGTTCA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016031XLOC_016031Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028292-proteinTCONS_00028292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028292-exon-sc0000672-1491911889:185443..186383TCONS_00028292-exon-sc0000672-1491911889:185443..186383Clytia hemisphaericaexon
TCONS_00028292-exon-sc0000672-1510915933:185443..186383TCONS_00028292-exon-sc0000672-1510915933:185443..186383Clytia hemisphaericaexon
TCONS_00028292-exon-sc0000672-1575043694:185443..186383TCONS_00028292-exon-sc0000672-1575043694:185443..186383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000672supercontigsc0000672:185443..186383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40208	1.37177	0.558931	0.549382	0.785872	0.511742	1.18703	0.956328	0.628684	0.331509	0.977319	1.40548	0.980386	1.28048	1.9205	1.56013	0.92438	1.25332	0.245091	0.126519	1.48524	0.708597	2.75643	3.03538	0.15611	1.13114	0	0.237732	1.57707	1.31541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00028292 vs. Swiss-Prot (Human)
Match: ZN227 (Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.272e-24
Identity = 85/277 (30.69%), Postives = 123/277 (44.40%), Query Frame = -1 
Query:    3 ENLIVETVNFDCKVCGKQFKKSCTLQTHLRIHEGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCSVCGKKFQFPNNLIVHAQYH-----LKNEEVERPETKRKLVFI-----TPEKS-NCNQVTEGIKVPNQLDCIINNSANNPSTSPRKQNSSDLQMFALKCKDQMFIDTFKDKKQHLCKICGKGFMYLPTLQRHFATHGELKQLQQCADCEKEFEYGRLFNSHLKTNGCKTPYKCSVCEKKIXXXXXXXXXXXXXLGEKRYKCGVCDKEFS 800
            + +  E   + C+ CGK F  S  L+ H R+H GE PY  +  GKGF ++  F     V    K ++C VCGK F   + LI H + H      K E   +  T+   + I     T EK   C +  +G    + L        N  +   R +  +  + F+   K Q        +K + C +CGK F Y   L+ H   H   K   +C +C K F +    ++H + +  + PYKC  C+K  S      +H  VH GEK YKCGVC K FS
Sbjct:  371 QRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQV----HQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPY-KCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFS 642

HSP 2 Score: 94.7449 bits (234), Expect = 3.286e-21
Identity = 82/267 (30.71%), Postives = 117/267 (43.82%), Query Frame = -1 
Query:    3 NFDCKVCGKQFKKSCTLQTHLRIHEGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCSVCGKKFQFPNNLIVHAQYHLKNEEVERPETKRKLVFITPEKSNCNQVTEGIKVPNQLD-CIINNSANNPSTSPRKQNSSDL--------QMFALKCKDQMFIDTFKDKKQHLCKICGKGFMYLPTLQRHFATHGELKQLQQCADCEKEFEYGRLFNSHLKTNGCKTPYKCSVCEKKIXXXXXXXXXXXXXLGEKRYKCGVCDKEFS 776
            ++ C  CGK F  S  L  H R H GE PY  +  GK F +S+ FQ    V    K ++C  CGK F +  NL VH + H   +  +  E  +   F      + +Q     + P + D C    S N+P    R+ ++ +         + F       +       +K + CK CGKGF     LQ H   H   K+  +C  C K F       +H + +  + PY+C VC K  S  + L LH ++H GEK YKC  C K FS
Sbjct:  323 SYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKG--FTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRF-KCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFS 586
The following BLAST results are available for this feature:
BLAST of TCONS_00028292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2277.272e-2430.69Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 ... [more]
back to top