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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028288 ID=TCONS_00028288|Name=TCONS_00028288|organism=Clytia hemisphaerica|type=transcript|length=625bpRun BLAST on NCBI protein sequence of TCONS_00028288-protein >TCONS_00028288-protein ID=TCONS_00028288-protein|Name=TCONS_00028288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp MSDLHLPENICTVYPSSHLSAINGGINKPHQCSQCSMTFVNTSNLKVHMRRun BLAST on NCBI transcript from alignment at sc0000672:133953..134577 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028288 ID=TCONS_00028288|Name=TCONS_00028288|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at sc0000672:133953..134577 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000672:133953..134577 >TCONS_00028288 ID=TCONS_00028288|Name=TCONS_00028288|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0000672:133953..134577 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028288 vs. Swiss-Prot (Human)
Match: ZN214 (Zinc finger protein 214 OS=Homo sapiens GN=ZNF214 PE=2 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 8.731e-49 Identity = 82/167 (49.10%), Postives = 113/167 (67.66%), Query Frame = -3
Query: 6 KPHQCSQCSMTFVNTSNLKVHMRMHVGNKPFICHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQ 506
KP++C +C F +SNL++H +H G K + C ++C K F SNL++H R HTGEKPY+C+ CGK FSHS +L+ H R+HTGEKPY C CGK F+ +S L++H + + E+ K C +CGK F+ R +L H RVHTG +P+KC C KGF +SSNL +HQ
Sbjct: 384 KPYKCDECGKGFSQSSNLRIHQLVHTGEKSYKC--EDCGKGFTQRSNLQIHQRVHTGEKPYKCDDCGKDFSHSSDLRIHQRVHTGEKPYTCPECGKGFSKSSKLHTHQRVHTGEKPYK---CEECGKGFSQRSHLLIHQRVHTGEKPYKCHDCGKGFSHSSNLHIHQ 545 HSP 2 Score: 166.007 bits (419), Expect = 2.007e-47 Identity = 84/167 (50.30%), Postives = 107/167 (64.07%), Query Frame = -3
Query: 6 KPHQCSQCSMTFVNTSNLKVHMRMHVGNKPFICHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQ 506
K ++C C F SNL++H R+H G KP+ C D+C K F SS+L++H R HTGEKPY C CGK FS S L TH R+HTGEKPYKC+ CGK F+ S+L H + + E+ K C CGK F+ NL H RVHTG +P++C C KGF +SS LR+HQ
Sbjct: 412 KSYKCEDCGKGFTQRSNLQIHQRVHTGEKPYKC--DDCGKDFSHSSDLRIHQRVHTGEKPYTCPECGKGFSKSSKLHTHQRVHTGEKPYKCEECGKGFSQRSHLLIHQRVHTGEKPYK---CHDCGKGFSHSSNLHIHQRVHTGEKPYQCAKCGKGFSHSSALRIHQ 573 HSP 3 Score: 163.31 bits (412), Expect = 1.603e-46 Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = -3
Query: 6 KPHQCSQCSMTFVNTSNLKVHMRMHVGNKPFICHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQ 506
KP +C+QC +F +S L VH R+H G KP+ C D C K F SSNL++H HTGEK Y+C CGK F+ NL+ H R+HTGEKPYKCD CGK F+++S+L H + + EK C +CGK F+ L TH RVHTG +P+KC C KGF S+L +HQ
Sbjct: 356 KPFKCNQCGKSFNRSSVLHVHQRVHTGEKPYKC--DECGKGFSQSSNLRIHQLVHTGEKSYKCEDCGKGFTQRSNLQIHQRVHTGEKPYKCDDCGKDFSHSSDLRIHQRVH---TGEKPYTCPECGKGFSKSSKLHTHQRVHTGEKPYKCEECGKGFSQRSHLLIHQ 517 HSP 4 Score: 155.221 bits (391), Expect = 1.325e-43 Identity = 80/161 (49.69%), Postives = 98/161 (60.87%), Query Frame = -3
Query: 6 QCSMTFVNTSNLKVHMRMHVGNKPFICHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQ 488
+C S L +H R+H+G KPF C + C K F SS L VH R HTGEKPY+C+ CGK FS S NL+ H +HTGEK YKC+ CGK FT SNL H + + E+ K C CGK F+ +L+ H RVHTG +P+ CP C KGF SS L HQ
Sbjct: 334 ECDKDLSRNSLLHIHQRLHIGEKPFKC--NQCGKSFNRSSVLHVHQRVHTGEKPYKCDECGKGFSQSSNLRIHQLVHTGEKSYKCEDCGKGFTQRSNLQIHQRVHTGEKPYK---CDDCGKDFSHSSDLRIHQRVHTGEKPYTCPECGKGFSKSSKLHTHQ 489 HSP 5 Score: 149.828 bits (377), Expect = 8.774e-42 Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = -3
Query: 18 KPHQCSQCSMTFVNTSNLKVHMRMHVGNKPFICHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNL 506
KP++C C F ++S+L++H R+H G KP+ C C K F SS L H R HTGEKPY+C CGK FS +L H R+HTGEKPYKC CGK F+++SNL+ H + + EK C +CGK F+ L+ H RVH G +P+KC KGF ++S+L
Sbjct: 440 KPYKCDDCGKDFSHSSDLRIHQRVHTGEKPYTC--PECGKGFSKSSKLHTHQRVHTGEKPYKCEECGKGFSQRSHLLIHQRVHTGEKPYKCHDCGKGFSHSSNLHIHQRVH---TGEKPYQCAKCGKGFSHSSALRIHQRVHAGEKPYKCREYYKGFDHNSHL 597 HSP 6 Score: 140.198 bits (352), Expect = 2.746e-38 Identity = 79/192 (41.15%), Postives = 102/192 (53.12%), Query Frame = -3
Query: 6 KPHQCSQCSMTFVNTSNLKVHMRMHVGNKPFIC-------------------HID------NCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCDVCGKTFTNTSNLNSHVKFNHEEREEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQ 506
K + C + F +S + H R+H+G P+ C H + C K +S L +H R H GEKP++CN CGK F+ S L H R+HTGEKPYKCD CGK F+ +SNL H + EKS C CGK F R NL+ H RVHTG +P+KC C K F +SS+LR+HQ
Sbjct: 273 KLYGCDEVDGNFHQSSGVHFHQRVHIGEVPYSCNACGKSFSQISSLHNHQRVHTEEKFYKIECDKDLSRNSLLHIHQRLHIGEKPFKCNQCGKSFNRSSVLHVHQRVHTGEKPYKCDECGKGFSQSSNLRIHQLVH---TGEKSYKCEDCGKGFTQRSNLQIHQRVHTGEKPYKCDDCGKDFSHSSDLRIHQ 461 HSP 7 Score: 85.1149 bits (209), Expect = 7.143e-19 Identity = 59/188 (31.38%), Postives = 80/188 (42.55%), Query Frame = -3
Query: 3 CHIDNCKKRFISSSNLKVHIRSHTGEKPYECNVCGKLFSHSGNLKTHLRIHTGEKPYKCD----------------------------VCGKTFTNTSNLNSHVKFNHEER------------------------EEKSVWCTQCGKRFAFRCNLKTHMRVHTGARPFKCPTCEKGFINSSNLRVHQM 410
C + CK + +S H R+ GE +C++C FS +L H R H G+K Y CD CGK+F+ S+L++H + + EE+ EK C QCGK F L H RVHTG +P+KC C KGF SSNLR+HQ+
Sbjct: 219 CGCNKCKGIYYWNSRCVFHKRNQPGENLCQCSICKACFSQRSDLYRHPRNHIGKKLYGCDEVDGNFHQSSGVHFHQRVHIGEVPYSCNACGKSFSQISSLHNHQRVHTEEKFYKIECDKDLSRNSLLHIHQRLHIGEKPFKCNQCGKSFNRSSVLHVHQRVHTGEKPYKCDECGKGFSQSSNLRIHQL 406 The following BLAST results are available for this feature:
BLAST of TCONS_00028288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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