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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028249 ID=TCONS_00028249|Name=TCONS_00028249|organism=Clytia hemisphaerica|type=transcript|length=801bp
GAAAATGCTTAACCTTCGCTAATTACTAGAGCCATAATATATAATCTCAA
ACCATTCCCCCGTTGGAGTATTTTGAATCTAAGAAGTATTATACATACAC
AATCACAATAGATAGGATTAATATCCTAAAGCTTGATTTTTTATCCTCGA
TAGTTATAGCATTTCAATAGCGTGGGATTTAAGTAtttagttttattttg
aaatgctGACAATGAAAGCTCTTTTTAGGGCACCCAGCAGAGATAAGGAG
GGGGAAAATTAAAACGTGGGATTAAGTTGTGCTTAAATTGATGCGTGTAA
GGAAAAAATACTCATTCACCCAAAAGATAGTGAGAAGAAGTTAACTGTAT
AtgagattcgattgatattatCATACAGCAAGTGTGTGCAAAATGAAGGG
CATCAAAGTCCTTCTCTTATTTACTTTATTGTTTGGACCAATTCAACAAA
TGAACGGGCGATCTATGGTAAACATAAAAAAACTGATATCTGACCTTCGA
CATGAAGTCAAAGAACTTAAAGATGTTGTTGCTGAGAAAAAAGCAGACGA
AAACATCAGAGTTAACGACGAAGACGCAGAACCTCCTCTCAATCTTGCCG
ATGATTCCAATGATGCAATGAATGATGGTGAGATGCCTCCAATTGAGCTT
GCCGATGTGGAAGACCTTGATGAAGATGATGGGCCTGTCGAACTTTTGTC
CGACGAAGAGGAGTCTTTTGAGCTTTTATCTGACGAAGACACGATGGAAG
AAGATGGTGACGGGGAGCCTCCAACTGAACCAGAAATCGAATTTGATGAC
A Run BLAST on NCBI protein sequence of TCONS_00028249-protein >TCONS_00028249-protein ID=TCONS_00028249-protein|Name=TCONS_00028249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MKGIKVLLLFTLLFGPIQQMNGRSMVNIKKLISDLRHEVKELKDVVAEKK
ADENIRVNDEDAEPPLNLADDSNDAMNDGEMPPIELADVEDLDEDDGPVE
LLSDEEESFELLSDEDTMEEDGDGEPPTEPEIEFDD Run BLAST on NCBI transcript from alignment at sc0000671:51612..54793- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028249 ID=TCONS_00028249|Name=TCONS_00028249|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at sc0000671:51612..54793- (Clytia hemisphaerica)
GAAAATGCTTAACCTTCGCTAATTACTAGAGCCATAATATATAATCTCAA
ACCATTCCCCCGTTGGAGTATTTTGAATCTAAGAAGTATTATACATACAC
AATCACAATAGATAGGATTAATATCCTAAAGCTTGATTTTTTATCCTCGA
TAGTTATAGCATTTCAATAGCGTGGGATTTAAGTATTTAGTTTTATTTTG
AAATGCTGACAATGAAAGCTCTTTTTAGGGCACCCAGCAGAGATAAGGAG
GGGGAAAATTAAAACGTGGGATTAAGTTGTGCTTAAATTGATGCGTGTAA
GGAAAAAATACTCATTCACCCAAAAGATAGTGAGAAGAAGTTAACTGTAT
ATGAGATTCGATTGATATTATCATACAGCAAGTGTGTGCAAAATGAAGGG
CATCAAAGTCCTTCTCTTATTTACTTTATTGTTTGGACCAATTCAACAAA
TGAACGGGCGATCTATGGTAAACATAAGTAAGTAAATGATATCCTCGATG
ATATCTGTCTTATGTTTTTTTTCTTCAAATAATTGCGTACCTCAGAGATA
TGTGAGTCCTTTCCGCATGTAGATTGTGATTTCGTTAGGTTTCGACTTTC
ATTTTACCAAAGAAGGACAGTGATTTTTTTGCAAAATTTAAAATTTTCAA
ATTTTGCTGTTGTCAGCAGAAATTATCAAAATACAATATTTTGCAAATAG
TGCTCACGTCAAGAAAGATTCAAAAAATATTTTTTGCAAAATGATCCTTT
TAATGATGTGCAACTTTATTCGAAATTTCATGTTTCTACCATAGCCAAAC
TGGAGTTATTTAAGAAAAAAGTTTTGAGGTCTGCACTTTTTGTTTTTTTG
CGGGTCGTATTAAATGATTGGCTTGCTCCTTTTCCACCGGCTAATGGTCT
TCGAAAATTATGGTGATTTTCATGTTTTTGAGACATGCTATAACTTACCT
GAGCTGACTTCTTGCCTGTATCAATGACCCGGTAAGGGGGGGGGAGGTCA
GTGTTAAGGCAGTTAGCCTTAATTGGAAGAGTCTCAAGTCCCACACAGCA
CTCTCACCATTTTGCAGTTTGTCATTTTTCATGTTTCCTTTTGGTTTCAT
CATGTTTGTTTACCTTTTTCAGTTTGGTCAGTATTTTACTCATATTTTCT
ACCATTTTTAATATATTTCATATTTTCAGTAAAATTTACATTTGGTCAGT
ATTTTGTATATCAATATATGTCAATTCAATAATTATGTAATTCACTTTTT
GTCATAATTTATTAATTTTTTCATAAATTATTTTTGGTCAATCTTCATAC
ACTTGGTGTTAGTCTACACACACCCTATGTACTGCTCTCTGCTTACAGCT
TTCAATCTCAGGTTAGCTGGCGAGTTTTTTCTTTCTTTTGCTTTTGTTCC
ACGTTCCACAGTGGCTTTAAGTTTTTATTTCATATTTTTCTAATACTCAA
TTATTTTTCTAGTTCTCAATTATACTTATCATTTTCATTCACTTCCTTTG
ATACTTAGTTCATGTACTTTTTCAGCCATTTTGTTCTCTTTTTTCATTGG
ACGTATTTGTTCAAATTTTATATTTCAGTTTGAACACACACGTAACCAGG
TGACCAGGTGAAAGGTCTGCCAAATAATGTCCCAAATTTGAGCCCCAGTG
AGACAATGAGTAAACATGGCCATAATTATCAATTGAAATGAATTAGTCCG
ATCAAAACCTGAAAATCTTTTTGTCTTACAATGGTCAATAATCGTATTAA
TTCGGGCAAGCTTGTCAAAATCGAAAAATATTTTTTTCTATCACGGTCAA
AATTTCACTCACCCCAGTGAATTATCTCAATGAATTTAAGCTCGGTGGTT
TTTTATTTGGCTACCCCGCTAGGTTTCAAATATTCATTGGGTCACTGCTC
GAGTGACTTAGGGCAAGTCTCAAAAACCTAACAGTTTACCCTAAGTTTTC
GCTACCAATAGCAGCCAGATTCAGAGAACCACTTAGGGCTCTAAAGTACC
TCTATACCTTGAAGTTTATGAACTGGGTTGTTACCTAATTAAATATCTCT
CTAAAAATTTATAATTAAAGAAATTGTAATCATGACGTCATAATTTGATT
GAATTTGGTGACGTCATGAATCGTATAAACGCTATAAAATTAAAAATAGA
TGTCCAATCTTTCCCAAATTTGAACCAAAGATGCATCTAACCGAAATGTA
ACTTTTTGAAAAAATTTTTTTTTTCGATTTTTTGCAATTTTTGCTGACGT
CATCAAAATTTTCAAAAGATTTTTCATTGGAAAGTTTGACACCATTAAGA
TGCATCTTTGGTCCAAATTTGACAAAAATTCCACATGTACTTATAGAGTT
AGAGCTAATTTACGATTTATGACGTCATAATTCACACTTTCTTTAATAAT
TAATTTTTAGGTTGACATTTAATTACGTAACAACCAGGTCCTGAAACCTT
ATGGTATAGGTAATCTAAAAATCCATAAGTGAATCCATAAGAATGGGTGC
TATTGGTCGCGGATTCGGGATTTTTGATTTAAAAAATCTAGACACGCCCT
AACTCACCCAAGTGTTGATATGGTTGATGTTCCACTTACTTTAGTAGAAG
TAATCATTATAACCTCGTAGGTCCTGGCCAGCCATTTCGAGTGGGGGCTT
CAATATTTAGGTTAGCAATTTTTCACTTTTTAAACCTCCATAACACCCTA
AAACGTTATCTAAATGGGGAGAAAAATAGTTTTTATAAGTTGATTTGGTC
TGTTTAAAGTTGTTCAATGATGTAAATTAATATGGTAAGTTGACGGGATA
CATAGAACTTTTTCACATGCAATCGATATACTAAAACCAAATCATCATTT
GCTTCTAGAAAAACTGATATCTGACCTTCGACATGAAGTCAAAGAACTTA
AAGATGTTGTTGCTGAGAAAAAAGCAGACGAAAACATCAGAGTTAACGAC
GAAGACGCAGAACCTCCTCTCAATCTTGCCGATGATTCCAATGATGCAAT
GAATGATGGTGAGATGCCTCCAATTGAGCTTGCCGATGTGGAAGACCTTG
ATGAAGATGATGGGCCTGTCGAACTTTTGTCCGACGAAGAGGAGTCTTTT
GAGCTTTTATCTGACGAAGACACGATGGAAGAAGATGGTGACGGGGAGCC
TCCAACTGAACCAGAAATCGAATTTGATGACA Coding sequence (CDS) from alignment at sc0000671:51612..54793- >TCONS_00028249 ID=TCONS_00028249|Name=TCONS_00028249|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000671:51612..54793- (Clytia hemisphaerica)
AAAAACTGATATCTGACCTTCGACATGAAGTCAAAGAACTTAAAGATGTT
GTTGCTGAGAAAAAAGCAGACGAAAACATCAGAGTTAACGACGAAGACGC
AGAACCTCCTCTCAATCTTGCCGATGATTCCAATGATGCAATGAATGATG
GTGAGATGCCTCCAATTGAGCTTGCCGATGTGGAAGACCTTGATGAAGAT
GATGGGCCTGTCGAACTTTTGTCCGACGAAGAGGAGTCTTTTGAGCTTTT
ATCTGACGAAGACACGATGGAAGAAGATGGTGACGGGGAGCCTCCAACTG
AACCAGAAATCGAATTTGATGACATGAAGGGCATCAAAGTCCTTCTCTTA
TTTACTTTATTGTTTGGACCAATTCAACAAATGAACGGGCGATCTATGGT
AAACATAAAAAAACTGATATCTGACCTTCGACATGAAGTCAAAGAACTTA
AAGATGTTGTTGCTGAGAAAAAAGCAGACGAAAACATCAGAGTTAACGAC
GAAGACGCAGAACCTCCTCTCAATCTTGCCGATGATTCCAATGATGCAAT
GAATGATGGTGAGATGCCTCCAATTGAGCTTGCCGATGTGGAAGACCTTG
ATGAAGATGATGGGCCTGTCGAACTTTTGTCCGACGAAGAGGAGTCTTTT
GAGCTTTTATCTGACGAAGACACGATGGAAGAAGATGGTGACGGGGAGCC
TCCAACTGAACCAGAAATCGAATTTGATGACATGAAGGGCATCAAAGTCC
TTCTCTTATTTACTTTATTGTTTGGACCAATTCAACAAATGAACGGGCGA
TCTATGGTAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028249-exon-sc0000671-1575043694:54317..54793 | TCONS_00028249-exon-sc0000671-1575043694:54317..54793 | Clytia hemisphaerica | exon |
| TCONS_00028249-exon-sc0000671-1575043694:51612..51935 | TCONS_00028249-exon-sc0000671-1575043694:51612..51935 | Clytia hemisphaerica | exon |
| TCONS_00028249-exon-sc0000671-1510915933:54317..54793 | TCONS_00028249-exon-sc0000671-1510915933:54317..54793 | Clytia hemisphaerica | exon |
| TCONS_00028249-exon-sc0000671-1510915933:51612..51935 | TCONS_00028249-exon-sc0000671-1510915933:51612..51935 | Clytia hemisphaerica | exon |
| TCONS_00028249-exon-sc0000671-1491911889:54317..54793 | TCONS_00028249-exon-sc0000671-1491911889:54317..54793 | Clytia hemisphaerica | exon |
| TCONS_00028249-exon-sc0000671-1491911889:51612..51935 | TCONS_00028249-exon-sc0000671-1491911889:51612..51935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000671 | supercontig | sc0000671:51612..54793 - |
Blast
The following BLAST results are available for this feature:
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