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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028235 ID=TCONS_00028235|Name=TCONS_00028235|organism=Clytia hemisphaerica|type=transcript|length=2480bp
AAAACAATGACGCGATGATCGTtcgaaatattattttgattttcatattt
GTGGCGAACGTGAATTGCAGTAATATCACCAACCCCCTTGGTTACAACGA
AACTGTAGAGAAAGAACAATTTCTTGAGTTATTCTACAAAATTTATGAAT
TGCGATTGGTATCCAATAACGACACCACAAACTCTAATCAATCATCGAAT
CACAGACAACGAAAAAGTCTCTCAGTAGACCTTTATGAAGCTTACAAAGT
AAAGTCCAAAGTCGAAGGATGGATCACAATACCTGAAAAAAACGAAATCG
ACAAACGAACAAGAGACTTGATCGCTGAGAAAACATGGGACCGCGCGGGC
GGAAAAATCGTACGAAAAACGTTTGAGAAAGTTGGTAGAAAGGCTGGCGG
ATTTGCAGGAGCTAGTCTAGGAGCAAGTATTGGAGCAACTTTGGGATTAG
GAAATCCTGTCTTTGTAGTCGCTGGTGTTTTTATTGGACAGAAATTCGGT
GAAGAGCTGGGATCTCTTGCAGGTGCTATTTCTGGAGATTATGTTAATAA
TTTTATCGCGCATAACATAATTAGTGATTCCTTGTTGCAACCTTTGACAC
AGGAACTGACAAATTTTGTAACAGAACTAAGCACCTCAGATGAACTCACT
TGTCGTAGCGATCGATGTGCTGCTGGTTACGCTGAAGCTAACTGCCAATG
TGTACGATGTAATGCTCAAAGACAGTATAGTGGGAACGGGGCAGCCTTCT
GTGAATCATGTCCATTGGGCTGGTACCCCTATCCTTCTTACTATCCTACC
TCTTGCAAACCTTGTTTTACAGGCACCTTCGGAGCAGCTGATGGGAAATG
TTATGGCTGCCGAGATACAGGACCGATGCGGTATTCAGATATTGAAGGAG
CCACTACATGCAAGACCTGTCCGTTGGGTAGCATTCCACCAGCAGTTTAT
AATCCAAAAGGATGTGGCCCATGCGGTCAAGGCTTTATTGGTAAAAACGA
TGGAAAATGCCATAGCTGTAATGCAGAAGGTCCAATGAGATATTCTGATG
TGCAAGGAGCAATTACATGCAAGACATGCCCTTTGGGAACCATACCTGGT
TACAGACCGTGGTCATATACCAGCGAGAAGATCATTTGTAAGCCATGTGG
GCAAGGATGGTTCGGGAAAAGCGATGGCAAATGTTACCGTTGCAAGGACG
AGGGTCCAATGAAATACTCTGGTATTGAGACAGGAGCTCCTAGTTGTAAA
ACGTGCCCCCTCGGTCACGTTCCTGATGGTTTTCATTTAGTTTGTAAAGC
TTGTGCTACAGGAACATTCGGCAAAATGGATGGTAAATGTCATAAGTGTG
CCGTGGTAGGACCAATGGCGTATTCTGATGTTGAAGGATCTACGTACTGT
AAGACGTGTCCTTTGGGTAGTATTCCTGAGTACGAAAGTCGGTGTCGCCC
GTGTCATGTTGGTACGTTCGGAAAGGTGGATGGTCATTGTCATGATTGTA
AAGAGGCTGGCCCTATGAGATATTCAAACGTGACTGGTGCGTGGTCTTGT
CAAACGTGCCCCGTGGGTACGTCTCCATACTGGACTATTCGGCCTACTAA
ATGTAAACCATGTCTTCGAGGATTTGTTGGTAAAAGTAATGGTTGCAAGG
ACTGTAAAAATGATGGCCCGATGAAATATTCCGACTCCATTGGAGCTACC
ATTTGTAAAACATGTTCCTTGGGTCAATACCCTGTCCCAAATTCTCAACC
TAATCGATGTCACCTTTGCTCTAAAGGTGAGTATGGGAAGAGCGATGGCC
AATGTTACAATTGTAAACCCGTGGGGCCAATGAAATACTCTGATATACAG
GGAGCAACCGAATGCAAAACATGCCCATTAGGACGTTTTCCGATACACAA
CCCGCCCTTTTATTGCGATTATTGTCAATTAGGAACCTACGGAAAAAGTG
ACGGCAAATGTTACAAGTGCACTGGCCCTATGTCTTATACCGACGCCCGA
GGATCAGTGTCCTGTAAAACATGTCAAGTCGGTTCTCAAGCTTACAGATC
AGGACCGGGAAGAGAATATCAAATTGGATGTTTGAGATGCCCATGGACAA
CGATTGGAACGAAAGAGGGGTGCCTTCGTCCGGACCAAGTAAACACGACG
ACTGTCCCCATAGCAACATCACGAGGATCTACACGTCAAGAAACAACTAC
TGAGGAGAGCCAAAAGCCCTCGTCAACACCTCGACCACATACAATAATCA
CAAAATCAACATCTCGTGCAACCAACAGTCCAGGATCCTCACAGGGGACT
ACCCAACCATCCACACATCGTTCAACCAGAAAAAATCAAACGATTCACCC
TCATTTGACTACAACAGAAACAATCAAATCTTCCACCCAGCCCCGCCAAC
CATATACCACCCCACCGCCCACCACCAATACACCAATCGATCAGTCCACA
ACAGATTCAAATTTCTTCGGAAACGAAGGA Run BLAST on NCBI protein sequence of TCONS_00028235-protein >TCONS_00028235-protein ID=TCONS_00028235-protein|Name=TCONS_00028235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=826bp
NNDAMIVRNIILIFIFVANVNCSNITNPLGYNETVEKEQFLELFYKIYEL
RLVSNNDTTNSNQSSNHRQRKSLSVDLYEAYKVKSKVEGWITIPEKNEID
KRTRDLIAEKTWDRAGGKIVRKTFEKVGRKAGGFAGASLGASIGATLGLG
NPVFVVAGVFIGQKFGEELGSLAGAISGDYVNNFIAHNIISDSLLQPLTQ
ELTNFVTELSTSDELTCRSDRCAAGYAEANCQCVRCNAQRQYSGNGAAFC
ESCPLGWYPYPSYYPTSCKPCFTGTFGAADGKCYGCRDTGPMRYSDIEGA
TTCKTCPLGSIPPAVYNPKGCGPCGQGFIGKNDGKCHSCNAEGPMRYSDV
QGAITCKTCPLGTIPGYRPWSYTSEKIICKPCGQGWFGKSDGKCYRCKDE
GPMKYSGIETGAPSCKTCPLGHVPDGFHLVCKACATGTFGKMDGKCHKCA
VVGPMAYSDVEGSTYCKTCPLGSIPEYESRCRPCHVGTFGKVDGHCHDCK
EAGPMRYSNVTGAWSCQTCPVGTSPYWTIRPTKCKPCLRGFVGKSNGCKD
CKNDGPMKYSDSIGATICKTCSLGQYPVPNSQPNRCHLCSKGEYGKSDGQ
CYNCKPVGPMKYSDIQGATECKTCPLGRFPIHNPPFYCDYCQLGTYGKSD
GKCYKCTGPMSYTDARGSVSCKTCQVGSQAYRSGPGREYQIGCLRCPWTT
IGTKEGCLRPDQVNTTTVPIATSRGSTRQETTTEESQKPSSTPRPHTIIT
KSTSRATNSPGSSQGTTQPSTHRSTRKNQTIHPHLTTTETIKSSTQPRQP
YTTPPPTTNTPIDQSTTDSNFFGNEG Run BLAST on NCBI transcript from alignment at sc0000670:166119..168598 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028235 ID=TCONS_00028235|Name=TCONS_00028235|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at sc0000670:166119..168598 (Clytia hemisphaerica)
TCCTTCGTTTCCGAAGAAATTTGAATCTGTTGTGGACTGATCGATTGGTG
TATTGGTGGTGGGCGGTGGGGTGGTATATGGTTGGCGGGGCTGGGTGGAA
GATTTGATTGTTTCTGTTGTAGTCAAATGAGGGTGAATCGTTTGATTTTT
TCTGGTTGAACGATGTGTGGATGGTTGGGTAGTCCCCTGTGAGGATCCTG
GACTGTTGGTTGCACGAGATGTTGATTTTGTGATTATTGTATGTGGTCGA
GGTGTTGACGAGGGCTTTTGGCTCTCCTCAGTAGTTGTTTCTTGACGTGT
AGATCCTCGTGATGTTGCTATGGGGACAGTCGTCGTGTTTACTTGGTCCG
GACGAAGGCACCCCTCTTTCGTTCCAATCGTTGTCCATGGGCATCTCAAA
CATCCAATTTGATATTCTCTTCCCGGTCCTGATCTGTAAGCTTGAGAACC
GACTTGACATGTTTTACAGGACACTGATCCTCGGGCGTCGGTATAAGACA
TAGGGCCAGTGCACTTGTAACATTTGCCGTCACTTTTTCCGTAGGTTCCT
AATTGACAATAATCGCAATAAAAGGGCGGGTTGTGTATCGGAAAACGTCC
TAATGGGCATGTTTTGCATTCGGTTGCTCCCTGTATATCAGAGTATTTCA
TTGGCCCCACGGGTTTACAATTGTAACATTGGCCATCGCTCTTCCCATAC
TCACCTTTAGAGCAAAGGTGACATCGATTAGGTTGAGAATTTGGGACAGG
GTATTGACCCAAGGAACATGTTTTACAAATGGTAGCTCCAATGGAGTCGG
AATATTTCATCGGGCCATCATTTTTACAGTCCTTGCAACCATTACTTTTA
CCAACAAATCCTCGAAGACATGGTTTACATTTAGTAGGCCGAATAGTCCA
GTATGGAGACGTACCCACGGGGCACGTTTGACAAGACCACGCACCAGTCA
CGTTTGAATATCTCATAGGGCCAGCCTCTTTACAATCATGACAATGACCA
TCCACCTTTCCGAACGTACCAACATGACACGGGCGACACCGACTTTCGTA
CTCAGGAATACTACCCAAAGGACACGTCTTACAGTACGTAGATCCTTCAA
CATCAGAATACGCCATTGGTCCTACCACGGCACACTTATGACATTTACCA
TCCATTTTGCCGAATGTTCCTGTAGCACAAGCTTTACAAACTAAATGAAA
ACCATCAGGAACGTGACCGAGGGGGCACGTTTTACAACTAGGAGCTCCTG
TCTCAATACCAGAGTATTTCATTGGACCCTCGTCCTTGCAACGGTAACAT
TTGCCATCGCTTTTCCCGAACCATCCTTGCCCACATGGCTTACAAATGAT
CTTCTCGCTGGTATATGACCACGGTCTGTAACCAGGTATGGTTCCCAAAG
GGCATGTCTTGCATGTAATTGCTCCTTGCACATCAGAATATCTCATTGGA
CCTTCTGCATTACAGCTATGGCATTTTCCATCGTTTTTACCAATAAAGCC
TTGACCGCATGGGCCACATCCTTTTGGATTATAAACTGCTGGTGGAATGC
TACCCAACGGACAGGTCTTGCATGTAGTGGCTCCTTCAATATCTGAATAC
CGCATCGGTCCTGTATCTCGGCAGCCATAACATTTCCCATCAGCTGCTCC
GAAGGTGCCTGTAAAACAAGGTTTGCAAGAGGTAGGATAGTAAGAAGGAT
AGGGGTACCAGCCCAATGGACATGATTCACAGAAGGCTGCCCCGTTCCCA
CTATACTGTCTTTGAGCATTACATCGTACACATTGGCAGTTAGCTTCAGC
GTAACCAGCAGCACATCGATCGCTACGACAAGTGAGTTCATCTGAGGTGC
TTAGTTCTGTTACAAAATTTGTCAGTTCCTGTGTCAAAGGTTGCAACAAG
GAATCACTAATTATGTTATGCGCGATAAAATTATTAACATAATCTCCAGA
AATAGCACCTGCAAGAGATCCCAGCTCTTCACCGAATTTCTGTCCAATAA
AAACACCAGCGACTACAAAGACAGGATTTCCTAATCCCAAAGTTGCTCCA
ATACTTGCTCCTAGACTAGCTCCTGCAAATCCGCCAGCCTTTCTACCAAC
TTTCTCAAACGTTTTTCGTACGATTTTTCCGCCCGCGCGGTCCCATGTTT
TCTCAGCGATCAAGTCTCTTGTTCGTTTGTCGATTTCGTTTTTTTCAGGT
ATTGTGATCCATCCTTCGACTTTGGACTTTACTTTGTAAGCTTCATAAAG
GTCTACTGAGAGACTTTTTCGTTGTCTGTGATTCGATGATTGATTAGAGT
TTGTGGTGTCGTTATTGGATACCAATCGCAATTCATAAATTTTGTAGAAT
AACTCAAGAAATTGTTCTTTCTCTACAGTTTCGTTGTAACCAAGGGGGTT
GGTGATATTACTGCAATTCACGTTCGCCACaaatatgaaaatcaaaataa
tatttcgaACGATCATCGCGTCATTGTTTT Coding sequence (CDS) from alignment at sc0000670:166119..168598 >TCONS_00028235 ID=TCONS_00028235|Name=TCONS_00028235|organism=Clytia hemisphaerica|type=CDS|length=2478bp|location=Sequence derived from alignment at sc0000670:166119..168598 (Clytia hemisphaerica)
TCCTTCGTTTCCGAAGAAATTTGAATCTGTTGTGGACTGATCGATTGGTG
TATTGGTGGTGGGCGGTGGGGTGGTATATGGTTGGCGGGGCTGGGTGGAA
GATTTGATTGTTTCTGTTGTAGTCAAATGAGGGTGAATCGTTTGATTTTT
TCTGGTTGAACGATGTGTGGATGGTTGGGTAGTCCCCTGTGAGGATCCTG
GACTGTTGGTTGCACGAGATGTTGATTTTGTGATTATTGTATGTGGTCGA
GGTGTTGACGAGGGCTTTTGGCTCTCCTCAGTAGTTGTTTCTTGACGTGT
AGATCCTCGTGATGTTGCTATGGGGACAGTCGTCGTGTTTACTTGGTCCG
GACGAAGGCACCCCTCTTTCGTTCCAATCGTTGTCCATGGGCATCTCAAA
CATCCAATTTGATATTCTCTTCCCGGTCCTGATCTGTAAGCTTGAGAACC
GACTTGACATGTTTTACAGGACACTGATCCTCGGGCGTCGGTATAAGACA
TAGGGCCAGTGCACTTGTAACATTTGCCGTCACTTTTTCCGTAGGTTCCT
AATTGACAATAATCGCAATAAAAGGGCGGGTTGTGTATCGGAAAACGTCC
TAATGGGCATGTTTTGCATTCGGTTGCTCCCTGTATATCAGAGTATTTCA
TTGGCCCCACGGGTTTACAATTGTAACATTGGCCATCGCTCTTCCCATAC
TCACCTTTAGAGCAAAGGTGACATCGATTAGGTTGAGAATTTGGGACAGG
GTATTGACCCAAGGAACATGTTTTACAAATGGTAGCTCCAATGGAGTCGG
AATATTTCATCGGGCCATCATTTTTACAGTCCTTGCAACCATTACTTTTA
CCAACAAATCCTCGAAGACATGGTTTACATTTAGTAGGCCGAATAGTCCA
GTATGGAGACGTACCCACGGGGCACGTTTGACAAGACCACGCACCAGTCA
CGTTTGAATATCTCATAGGGCCAGCCTCTTTACAATCATGACAATGACCA
TCCACCTTTCCGAACGTACCAACATGACACGGGCGACACCGACTTTCGTA
CTCAGGAATACTACCCAAAGGACACGTCTTACAGTACGTAGATCCTTCAA
CATCAGAATACGCCATTGGTCCTACCACGGCACACTTATGACATTTACCA
TCCATTTTGCCGAATGTTCCTGTAGCACAAGCTTTACAAACTAAATGAAA
ACCATCAGGAACGTGACCGAGGGGGCACGTTTTACAACTAGGAGCTCCTG
TCTCAATACCAGAGTATTTCATTGGACCCTCGTCCTTGCAACGGTAACAT
TTGCCATCGCTTTTCCCGAACCATCCTTGCCCACATGGCTTACAAATGAT
CTTCTCGCTGGTATATGACCACGGTCTGTAACCAGGTATGGTTCCCAAAG
GGCATGTCTTGCATGTAATTGCTCCTTGCACATCAGAATATCTCATTGGA
CCTTCTGCATTACAGCTATGGCATTTTCCATCGTTTTTACCAATAAAGCC
TTGACCGCATGGGCCACATCCTTTTGGATTATAAACTGCTGGTGGAATGC
TACCCAACGGACAGGTCTTGCATGTAGTGGCTCCTTCAATATCTGAATAC
CGCATCGGTCCTGTATCTCGGCAGCCATAACATTTCCCATCAGCTGCTCC
GAAGGTGCCTGTAAAACAAGGTTTGCAAGAGGTAGGATAGTAAGAAGGAT
AGGGGTACCAGCCCAATGGACATGATTCACAGAAGGCTGCCCCGTTCCCA
CTATACTGTCTTTGAGCATTACATCGTACACATTGGCAGTTAGCTTCAGC
GTAACCAGCAGCACATCGATCGCTACGACAAGTGAGTTCATCTGAGGTGC
TTAGTTCTGTTACAAAATTTGTCAGTTCCTGTGTCAAAGGTTGCAACAAG
GAATCACTAATTATGTTATGCGCGATAAAATTATTAACATAATCTCCAGA
AATAGCACCTGCAAGAGATCCCAGCTCTTCACCGAATTTCTGTCCAATAA
AAACACCAGCGACTACAAAGACAGGATTTCCTAATCCCAAAGTTGCTCCA
ATACTTGCTCCTAGACTAGCTCCTGCAAATCCGCCAGCCTTTCTACCAAC
TTTCTCAAACGTTTTTCGTACGATTTTTCCGCCCGCGCGGTCCCATGTTT
TCTCAGCGATCAAGTCTCTTGTTCGTTTGTCGATTTCGTTTTTTTCAGGT
ATTGTGATCCATCCTTCGACTTTGGACTTTACTTTGTAAGCTTCATAAAG
GTCTACTGAGAGACTTTTTCGTTGTCTGTGATTCGATGATTGATTAGAGT
TTGTGGTGTCGTTATTGGATACCAATCGCAATTCATAAATTTTGTAGAAT
AACTCAAGAAATTGTTCTTTCTCTACAGTTTCGTTGTAACCAAGGGGGTT
GGTGATATTACTGCAATTCACGTTCGCCACaaatatgaaaatcaaaataa
tatttcgaACGATCATCGCGTCATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028235-exon-sc0000670-1491911889:166119..168598 | TCONS_00028235-exon-sc0000670-1491911889:166119..168598 | Clytia hemisphaerica | exon |
| TCONS_00028235-exon-sc0000670-1510915933:166119..168598 | TCONS_00028235-exon-sc0000670-1510915933:166119..168598 | Clytia hemisphaerica | exon |
| TCONS_00028235-exon-sc0000670-1575043694:166119..168598 | TCONS_00028235-exon-sc0000670-1575043694:166119..168598 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:166119..168598 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011641 | Tyr-kin_ephrin_A/B_rcpt-like |
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
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