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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028199 ID=TCONS_00028199|Name=TCONS_00028199|organism=Clytia hemisphaerica|type=transcript|length=830bp
CTTTGATAAAAAGAACCGTTTTTTGAGATTTACAGCTAGAACAGCCAGAC
GTCCGATCAAGACAAACTACTTCACGTCAAGAACATTTCTTCGTACCTaa
tgtaaacataaatatttgGTGTATAACAATCAAAGCCACGATTTACTAAT
TCACTTGACAACACTGAGCCAGGCCTGAAAATTCCGAATCTCGTATCATA
CCAAACCGCAAAATCGACCTGAAGTTTCTATTCCGGTTATCAACATTCAA
AGACAgttgaaaatttaaatacttTCACTTTCCGTACCAAAACTATTTGG
AAGCTAGTAATTTGGAAATTTCGTAACGAAAGACTTCCTGACCTTCCTGC
TATCCAACATCAAAACATGTGACAACGTgatcagaaaaaccaaaacaaaa
caactaTCCTGTATTACTTATTGGAAGTGACCACATAATAATAAACAAAG
CTATATACGTACTGTACGCATCACAAGTCAATTATCTAATTTGCAACAAG
AAATTTACAGGAAGAATCACCTCATCATAAGGATAAAGGAGACGAGGACA
CAATTCTTGGCACTCACTAAAATTGTTGATTCCGTTCAATCCAATATCGA
TGTACTATAGCTGATGACGCATTGGAGCTGACATTGATCATTTTGGACCA
GAAACACTTAAGGAAGGAACCGACAGATTACTGTAACAAAATTCGTTCGT
GACATTCGATTCCAATCAAAAGATCTGAAGTCATTACATTCCACCAAATT
TTATTCTCGAATTTGATAACTTTAATTTGATCGTTAGATCATCAAAGAGT
TGTGATCGTTGTGATGAGAAAAccaataga Run BLAST on NCBI transcript from alignment at sc0000670:128466..130144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028199 ID=TCONS_00028199|Name=TCONS_00028199|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at sc0000670:128466..130144+ (Clytia hemisphaerica)
CTTTGATAAAAAGAACCGTTTTTTGAGGTAAGTTCTATTTTTAAGATTCG
GTAAACTGTTTAAAAAGACTTCGTATATACTGTTAAATACTTTAGAACAA
AAATGATTCATGTCCGATCTTTAGATAGTAAAAAATTTAGAAGAAAGTGA
AACCATAAGATTTGCGCCGCGTCAAAAAAGACGGATTGAATTCAACACTT
Tttcacatatttttcaaaatctgactatggattttactttcaatctagcg
cttgtgtgaaaaccacgcatGTCACACGTcttgaatgggaaataagttgC
TTCATGTCCCACTCAAGAGCTTCAGGTCTAGCCCCTTCGGGACTTTCAAT
TCAATGGTTTGGCTTCCCGATAAACAAGGTTCTACTGGTGTCATCGTGTT
ACGATTCGATAGTTTGCATTTGTAGAATCGCAATGATTGGCTGCGCTGAG
ATATGTGATTTTTACTTCACCCTGGGTAGGACCCGTACCGAGAGTTCGGA
GGGCATACAGTATCGTATCTAGTTGAGAAAAACTTTCCCGATGAATAAAt
acaaatagaacgaaaataGGCATTTGTAAACCTTTATTGagctcttattt
aaaaaattgtttcttttttgaaattccagaTTTCCAAGTGGCAATAAAGC
TTGGAGCCGCGGTAGCCGGGAAGTTTTGAGCTCATTTTGGTACTattgga
aagctatttttataTATCCTGTCTgcgcccctttaaatcaagagGTTAAG
AACTATGACCAAAAGTCTTGGACTTTTGACCTACTTTGGACGTGTATAAC
GTCTTTCGGGGGTAAAAGGGTTAAACATTTACAAGTTATCATGTGACTCt
cctttttcctttttcatttacTTTAGATTTACAGCTAGAACAGCCAGACG
TCCGATCAAGACAAACTACTTCACGTCAAGAACATTTCTTCGTACCTaat
gtaaacataaatatttgGTGTATAACAATCAAAGCCACGATTTACTAATT
CACTTGACAACACTGAGCCAGGCCTGAAAATTCCGAATCTCGTATCATAC
CAAACCGCAAAATCGACCTGAAGTTTCTATTCCGGTTATCAACATTCAAA
GACAgttgaaaatttaaatacttTCACTTTCCGTACCAAAACTATTTGGA
AGCTAGTAATTTGGAAATTTCGTAACGAAAGACTTCCTGACCTTCCTGCT
ATCCAACATCAAAACATGTGACAACGTgatcagaaaaaccaaaacaaaac
aactaTCCTGTATTACTTATTGGAAGTGACCACATAATAATAAACAAAGC
TATATACGTACTGTACGCATCACAAGTCAATTATCTAATTTGCAACAAGA
AATTTACAGGAAGAATCACCTCATCATAAGGATAAAGGAGACGAGGACAC
AATTCTTGGCACTCACTAAAATTGTTGATTCCGTTCAATCCAATATCGAT
GTACTATAGCTGATGACGCATTGGAGCTGACATTGATCATTTTGGACCAG
AAACACTTAAGGAAGGAACCGACAGATTACTGTAACAAAATTCGTTCGTG
ACATTCGATTCCAATCAAAAGATCTGAAGTCATTACATTCCACCAAATTT
TATTCTCGAATTTGATAACTTTAATTTGATCGTTAGATCATCAAAGAGTT
GTGATCGTTGTGATGAGAAAAccaataga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028199-exon-sc0000670-1491911889:128466..128492 | TCONS_00028199-exon-sc0000670-1491911889:128466..128492 | Clytia hemisphaerica | exon |
| TCONS_00028199-exon-sc0000670-1510915933:128466..128492 | TCONS_00028199-exon-sc0000670-1510915933:128466..128492 | Clytia hemisphaerica | exon |
| TCONS_00028199-exon-sc0000670-1575043694:128466..128492 | TCONS_00028199-exon-sc0000670-1575043694:128466..128492 | Clytia hemisphaerica | exon |
| TCONS_00028199-exon-sc0000670-1491911889:129342..130144 | TCONS_00028199-exon-sc0000670-1491911889:129342..130144 | Clytia hemisphaerica | exon |
| TCONS_00028199-exon-sc0000670-1510915933:129342..130144 | TCONS_00028199-exon-sc0000670-1510915933:129342..130144 | Clytia hemisphaerica | exon |
| TCONS_00028199-exon-sc0000670-1575043694:129342..130144 | TCONS_00028199-exon-sc0000670-1575043694:129342..130144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:128466..130144 + |
Blast
The following BLAST results are available for this feature:
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