TCONS_00028197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028197
Unique NameTCONS_00028197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028197 ID=TCONS_00028197|Name=TCONS_00028197|organism=Clytia hemisphaerica|type=transcript|length=1384bp
ctttttttctctctttcattTACAGCTTGATAACATTGTTCGACCGCTAG
AAATAATAAAATGCCAATTATCTATACGATGAATGTAAATTGTAGTTTTC
TTCGATAGCCAATAGTTATAGCGACGTTTAAATAGCCCCTTCATTGTTCC
AGGTCTGGCCCATGAGGAAAACGAACATCAAAAATTGGTTTTCAGATGTC
TCCTATGATCCAGAATAATTGGTGTTATTGAATTTCTGACGTCGTGCAGA
ATATAGAGAGTAAAGAATCATAAAACCTAGTTGACTTTATTCACTGGCTT
CCTTTCTCTTGGCCCTGCACCATGTTCAAATAAAGGCAAAGTACCggatc
tttttttttcaccgTACCAAAGTATTTTTGAATCACAAGTAGaagtgaaa
taattttcattaagaATCTGTTTGTATTAGTCTCTGACCTGATATCTTTT
ACTTCAAAATCATAAGCGTTAATAAGATCGGAATGAGTCCTTCATTATCG
GATATGATGGACGATTTATGGCCGAAATCCTTTCTTCTGGATTTCTTGAG
TTCAAAATGTCAGTGTAGAAGCAGATAAATTATATTTNACCAAAATCCTT
TCTTCTGGACTTCTTGAGTTCAAAATGTCAGTGTAGAAGCAGATAAATTA
TATTTCAATCGGAAAGTGTGGCATCTTATTCTTAATTAGTATAATTAACT
AATTATCTGCTTGATAGAGAAACATGATGTTAAGCAAGAACATAAGAATG
AAGTTAATTATAAACTGCTACTTCAGAAGGGAAAGTGAAGATCATCCTTG
CTGACGGTTCACCATCATCTCATTCAATAAAGAATAGGACAattggaaga
agaagaagatttttcaaagagttcgaagaagaagaaaatctttGAGAAAG
TTTGACTGAAACACTCATTACTGTGCTTTGATAAAAAGAACCGTTTTTTG
AGGTAAGTTCTATTTTTAAGATTCGGTAAACTGTTTAAAAAGACTTCGTA
TATACTGTTAAATACTTTAGAACAAAAATGATTCATGTCCGATCTTTAGA
TAGTAAAAAATTTAGAAGAAAGTGAAACCATAAGATTTGCGCCGCGTCAA
AAAAGACGGATTGAATTCAACACTTTttcacatatttttcaaaatctgac
tatggattttactttcaatctagcgcttgtgtgaaaaccacgcatGTCAC
ACGTcttgaatgggaaataagttgCTTCATGTCCCACTCAAGAGCTTCAG
GTCTAGCCCCTTCGGGACTTTCAATTCAATGGTTTGGCTTCCCGATAAAC
AAGGTTCTACTGGTGTCATCGTGTTACGATTCGATAGTTTGCATTTGTAG
AATCGCAATGATTGGCTGCGCTGAGATATGTGAT
Run BLAST on NCBI

transcript from alignment at sc0000670:127541..128924+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028197 ID=TCONS_00028197|Name=TCONS_00028197|organism=Clytia hemisphaerica|type=transcript|length=1384bp|location=Sequence derived from alignment at sc0000670:127541..128924+ (Clytia hemisphaerica)
ctttttttctctctttcattTACAGCTTGATAACATTGTTCGACCGCTAG
AAATAATAAAATGCCAATTATCTATACGATGAATGTAAATTGTAGTTTTC
TTCGATAGCCAATAGTTATAGCGACGTTTAAATAGCCCCTTCATTGTTCC
AGGTCTGGCCCATGAGGAAAACGAACATCAAAAATTGGTTTTCAGATGTC
TCCTATGATCCAGAATAATTGGTGTTATTGAATTTCTGACGTCGTGCAGA
ATATAGAGAGTAAAGAATCATAAAACCTAGTTGACTTTATTCACTGGCTT
CCTTTCTCTTGGCCCTGCACCATGTTCAAATAAAGGCAAAGTACCggatc
tttttttttcaccgTACCAAAGTATTTTTGAATCACAAGTAGaagtgaaa
taattttcattaagaATCTGTTTGTATTAGTCTCTGACCTGATATCTTTT
ACTTCAAAATCATAAGCGTTAATAAGATCGGAATGAGTCCTTCATTATCG
GATATGATGGACGATTTATGGCCGAAATCCTTTCTTCTGGATTTCTTGAG
TTCAAAATGTCAGTGTAGAAGCAGATAAATTATATTTNACCAAAATCCTT
TCTTCTGGACTTCTTGAGTTCAAAATGTCAGTGTAGAAGCAGATAAATTA
TATTTCAATCGGAAAGTGTGGCATCTTATTCTTAATTAGTATAATTAACT
AATTATCTGCTTGATAGAGAAACATGATGTTAAGCAAGAACATAAGAATG
AAGTTAATTATAAACTGCTACTTCAGAAGGGAAAGTGAAGATCATCCTTG
CTGACGGTTCACCATCATCTCATTCAATAAAGAATAGGACAattggaaga
agaagaagatttttcaaagagttcgaagaagaagaaaatctttGAGAAAG
TTTGACTGAAACACTCATTACTGTGCTTTGATAAAAAGAACCGTTTTTTG
AGGTAAGTTCTATTTTTAAGATTCGGTAAACTGTTTAAAAAGACTTCGTA
TATACTGTTAAATACTTTAGAACAAAAATGATTCATGTCCGATCTTTAGA
TAGTAAAAAATTTAGAAGAAAGTGAAACCATAAGATTTGCGCCGCGTCAA
AAAAGACGGATTGAATTCAACACTTTttcacatatttttcaaaatctgac
tatggattttactttcaatctagcgcttgtgtgaaaaccacgcatGTCAC
ACGTcttgaatgggaaataagttgCTTCATGTCCCACTCAAGAGCTTCAG
GTCTAGCCCCTTCGGGACTTTCAATTCAATGGTTTGGCTTCCCGATAAAC
AAGGTTCTACTGGTGTCATCGTGTTACGATTCGATAGTTTGCATTTGTAG
AATCGCAATGATTGGCTGCGCTGAGATATGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015963XLOC_015963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028197-exon-sc0000670-1491911889:127541..128924TCONS_00028197-exon-sc0000670-1491911889:127541..128924Clytia hemisphaericaexon
TCONS_00028197-exon-sc0000670-1510915933:127541..128924TCONS_00028197-exon-sc0000670-1510915933:127541..128924Clytia hemisphaericaexon
TCONS_00028197-exon-sc0000670-1575043694:127541..128924TCONS_00028197-exon-sc0000670-1575043694:127541..128924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:127541..128924 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120775	0.23555	0.273496	0.0334466	0.895797	0.386111	0.621103	0.436102	0.305325	0.472743	0.214133	0.201089	0.341376	0.312814	0.0685802	0.275989	0.226664	0.162626	0.224677	0.335869	0.291931	0.299027	0.0692393	0.0944228	0.486267	0.347185	0.786633	1.06044	0.636743	0.546308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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