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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028196 ID=TCONS_00028196|Name=TCONS_00028196|organism=Clytia hemisphaerica|type=transcript|length=1891bp
taaattttggccagtttggctaaattttaaggcaattcaccaaattttct
tcccttaTTAAAGTAACTAATAAACTTAATGGAATTCCGCAAAAAGCTTT
TTCTTTGCGAGCACCAAAAAATAAAGaccttttgtatttttcacaTTAAC
TGCAAAGTCATAATTGATTTCTAGATTCCAAAGTCCCTCTTCGCAGCGTT
TTTCTAAGACGATGGATTTACGGTTATCAGTTGGGTGAAGAATTCTAACA
CACTTGATATCATTCCAAATTTTTCGTAAACGGTCCCGCAAGTTTAAATG
ATGAACACATCCGTCCGGTAGAAGAATTTTCGACGAAAATGCCAATCTGA
AAATTAATACTTCTCCTGCTGTTCGACCACTAATTAAATCGTAATTCAAA
GCCTGGAACATTTTCTCGTAGTGTGGATAGTGTTCTTCCTTATCGAGAAC
ATAAAGAGTAAATTCCACCAAGTCGGGAAAAGGTGTTTTCATAAAATCGG
GTACTAATTTGGCCGATTTTTGTGATGCTATTTCCAATTCATCAAGTGTG
TTTTTTGTTATTTCTAGCTCATCttttaatcttttattttcaaccatcaa
attatcaattttttgatcaaatttatGGATTTCACATTCCATGATTCCat
tgttttttgcaatttcacgattttcgttttgaaattttaaaatttcagcg
TGGGATTTCTTCATTTCAATTATACGTTTTTCAATATCATCTCTCTTGTT
TTCTTTCAATTCTTCATTTTCTGCTTTTAAAGTTTTTACATCTTGCTCCA
ATGTCATTTTCTCCGCAACCAAAACATCCTTTTCAATACCAAATTGTTTC
TCAGCTTTCAGTAGAGCATTCtctgacgtcaattttaacATTTCAATGTC
CTTTCGCAACTCCTTTACTTCATTTGCTTTCTCGAAAACATCACTTTGAA
GTTTTGATTTCAATTTCTCGAAGTCACAATATTTCTTCAGATTGTCATTT
TCCATTCTCAGTTTATCCATTTCATATTGAGTTTTCAAGTTCTTGATTTC
TTCCCTGAGGAGGTTCACTACACTATCAACATTACCAACTACCCTAACTG
AATCTATTTCTTGATTTGAATCTTCTCGGAATCCAGCAGCATTTTGTTGA
TCAATCTTTCTCTCACTGTGAGCATTATGTATTTTCAGATTGTCGTTTTG
AATTTGTGATGCcattgttaaaaagataatgtTCACACATACAGTAGTCT
TACAGAGAAGGTCTGCAAAACATTTTGAGCATGAAAACTTGTACGATATC
TGCGTTTATTTGCAGTGCAAGTGTGAAAATATCGAACCAACAGGCAGTAT
ATTAAAACACTGGAAACAGAACTTCTTTCATTCACACCATTGTAGTCCAG
TAGAATTTTGAGTCGACCtagaaaaaatttgttgttgaCATCGAAAGCAA
ATGGATCAAACCAGACTGtgttaaaacaataaaaagcaAGCAGTTTAAGC
CCCTGATTTTTTTGGGGGTGCCAAAAGAACAGTGGTGCCAAAAGACCACT
GGTACCAAAAGACCAAGGATGCAAAGAGGCGTCCCTGATTACAAATTTTT
CGGCGCCTCTTTggtaatttaatttgttttctaGTAAATACTTTCATAAG
AGCAAGAAGCGAACTTTTAAGAAAACTACAGTATGTATCAAAAATTACCA
CGGCGAAATCAAACTACTAAAAATGCCAGGAAAAATTAACAATAAATAAA
ccaatattgacaacaaattaTCACCGATCTACCACTACCAGACCATTCAT
TTATCGACTagatccatgtatctatatagcATTGATAACTCCaatcatat
tttttattttcccttttttaaatatactttTTTGATTCTGT Run BLAST on NCBI transcript from alignment at sc0000670:100252..102198+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028196 ID=TCONS_00028196|Name=TCONS_00028196|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at sc0000670:100252..102198+ (Clytia hemisphaerica)
taaattttggccagtttggctaaattttaaggcaattcaccaaattttct
tcccttaTTAAAGTAACTAATAAACTTAATGGAATTCCGCAAAAAGCTTT
TTCTTTGCGAGCACCAAAAAATAAAGaccttttgtatttttcacaTTAAC
TGCAAAGTCATAATTGATTTCTAGATTCCAAAGTCCCTCTTCGCAGCGTT
TTTCTAAGACGATGGATTTACGGTTATCAGTTGGGTGAAGAATTCTAACA
CACTTGATATCATTCCAAATTTTTCGTAAACGGTCCCGCAAGTTTAAATG
ATGAACACATCCGTCCGGTAGAAGAATTTTCGACGAAAATGCCAATCTGA
AAATTAATACTTCTCCTGCTGTTCGACCACTAATTAAATCGTAATTCAAA
GCCTGGAACATTTTCTCGTAGTGTGGATAGTGTTCTTCCTTATCGAGAAC
ATAAAGAGTAAATTCCACCAAGTCGGGAAAAGGTGTTTTCATAAAATCGG
GTACTAATTTGGCCGATTTTTGTGATGCTATTTCCAATTCATCAAGTGTG
TTTTTTGTTATTTCTAGCTCATCttttaatcttttattttcaaccatcaa
attatcaattttttgatcaaatttatGGATTTCACATTCCATGATTCCat
tgttttttgcaatttcacgattttcgttttgaaattttaaaatttcagcg
TGGGATTTCTTCATTTCAATTATACGTTTTTCAATATCATCTCTCTTGTT
TTCTTTCAATTCTTCATTTTCTGCTTTTAAAGTTTTTACATCTTGCTCCA
ATGTCATTTTCTCCGCAACCAAAACATCCTTTTCAATACCAAATTGTTTC
TCAGCTTTCAGTAGAGCATTCtctgacgtcaattttaacATTTCAATGTC
CTTTCGCAACTCCTTTACTTCATTTGCTTTCTCGAAAACATCACTTTGAA
GTTTTGATTTCAATTTCTCGAAGTCACAATATTTCTTCAGATTGTCATTT
TCCATTCTCAGTTTATCCATTTCATATTGAGTTTTCAAGTTCTTGATTTC
TTCCCTGAGGAGGTTCACTACACTATCAACATTACCAACTACCCTAACTG
AATCTATTTCTTGATTTGAATCTTCTCAGAATCCAGCAGCATTTTGTTGA
TCAATCTTTNCATTTCTTGATTTGAATCTTCTCGGAATCCAGCAGCATTT
TGTTGATCAATCTTTCTCTCACTGTGAGCATTATGTATTTTCAGATTGTC
GTTTTGAATTTGTGATGCcattgttaaaaagataatgtTCACACATACAG
TAGTCTTACAGAGAAGGTCTGCAAAACATTTTGAGCATGAAAACTTGTAC
GATATCTGCGTTTATTTGCAGTGCAAGTGTGAAAATATCGAACCAACAGG
CAGTATATTAAAACACTGGAAACAGAACTTCTTTCATTCACACCATTGTA
GTCCAGTAGAATTTTGAGTCGACCtagaaaaaatttgttgttgaCATCGA
AAGCAAATGGATCAAACCAGACTGtgttaaaacaataaaaagcaAGCAGT
TTAAGCCCCTGATTTTTTTGGGGGTGCCAAAAGAACAGTGGTGCCAAAAG
ACCACTGGTACCAAAAGACCAAGGATGCAAAGAGGCGTCCCTGATTACAA
ATTTTTCGGCGCCTCTTTggtaatttaatttgttttctaGTAAATACTTT
CATAAGAGCAAGAAGCGAACTTTTAAGAAAACTACAGTATGTATCAAAAA
TTACCACGGCGAAATCAAACTACTAAAAATGCCAGGAAAAATTAACAATA
AATAAAccaatattgacaacaaattaTCACCGATCTACCACTACCAGACC
ATTCATTTATCGACTagatccatgtatctatatagcATTGATAACTCCaa
tcatattttttattttcccttttttaaatatactttTTTGATTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028196-exon-sc0000670-1491911889:100252..101356 | TCONS_00028196-exon-sc0000670-1491911889:100252..101356 | Clytia hemisphaerica | exon |
| TCONS_00028196-exon-sc0000670-1510915933:100252..101356 | TCONS_00028196-exon-sc0000670-1510915933:100252..101356 | Clytia hemisphaerica | exon |
| TCONS_00028196-exon-sc0000670-1575043694:100252..101356 | TCONS_00028196-exon-sc0000670-1575043694:100252..101356 | Clytia hemisphaerica | exon |
| TCONS_00028196-exon-sc0000670-1491911889:101413..102198 | TCONS_00028196-exon-sc0000670-1491911889:101413..102198 | Clytia hemisphaerica | exon |
| TCONS_00028196-exon-sc0000670-1510915933:101413..102198 | TCONS_00028196-exon-sc0000670-1510915933:101413..102198 | Clytia hemisphaerica | exon |
| TCONS_00028196-exon-sc0000670-1575043694:101413..102198 | TCONS_00028196-exon-sc0000670-1575043694:101413..102198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:100252..102198 + |
Blast
The following BLAST results are available for this feature:
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