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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028195 ID=TCONS_00028195|Name=TCONS_00028195|organism=Clytia hemisphaerica|type=transcript|length=2432bp
GCTTGCTTGAAattgttttataaaaaatacacTACATGGTAAAAAACTAA
AGGTTCGtcggaaataaaaaaatacagttAACCCTCACTAACTCGAACGG
GAAGTCTGATtagttcaaattacagagagattcaaattatagagcGTATT
GAGGGTTTTCTTTTCACGGGAACTGATAATTAGTTCGAGTTACAGAAAGA
TATGAATAATAAAAGTTCGAATTGACAATAGTCAAAAGTATTAAAAATAA
GCTCACTTGTAGCTGAAGGTAAGAAAATTTCGGCAAATAAttaaatttgc
aaatttttggacaacttattttggcgaatcaagaaaattttcaaatttga
ggAGAATTATTTTTGGCGAATGACCCGTTGTTTGGTAGCATTTTAGCTGA
AAAGGGAGGAATTAAAACGAAATATCATTCATATTTGGCAATAGTTaaaa
ttttcgaataaaaaaaaaatctaaattgagaggtattaaattttggccag
tttggctaaattttaaggcaattcaccaaattttcttcccttaTTAAAGT
AACTAATAAACTTAATGGAATTCCGCAAAAAGCTTTTTCTTTGCGAGCAC
CAAAAAATAAAGaccttttgtatttttcacaTTAACTGCAAAGTCATAAT
TGATTTCTAGATTCCAAAGTCCCTCTTCGCAGCGTTTTTCTAAGACGATG
GATTTACGGTTATCAGTTGGGTGAAGAATTCTAACACACTTGATATCATT
CCAAATTTTTCGTAAACGGTCCCGCAAGTTTAAATGATGAACACATCCGT
CCGGTAGAAGAATTTTCGACGAAAATGCCAATCTGAAAATTAATACTTCT
CCTGCTGTTCGACCACTAATTAAATCGTAATTCAAAGCCTGGAACATTTT
CTCGTAGTGTGGATAGTGTTCTTCCTTATCGAGAACATAAAGAGTAAATT
CCACCAAGTCGGGAAAAGGTGTTTTCATAAAATCGGGTACTAATTTGGCC
GATTTTTGTGATGCTATTTCCAATTCATCAAGTGTGTTTTTTGTTATTTC
TAGCTCATCttttaatcttttattttcaaccatcaaattatcaatttttt
gatcaaatttatGGATTTCACATTCCATGATTCCattgttttttgcaatt
tcacgattttcgttttgaaattttaaaatttcagcgTGGGATTTCTTCAT
TTCAATTATACGTTTTTCAATATCATCTCTCTTGTTTTCTTTCAATTCTT
CATTTTCTGCTTTTAAAGTTTTTACATCTTGCTCCAATGTCATTTTCTCC
GCAACCAAAACATCCTTTTCAATACCAAATTGTTTCTCAGCTTTCAGTAG
AGCATTCtctgacgtcaattttaacATTTCAATGTCCTTTCGCAACTCCT
TTACTTCATTTGCTTTCTCGAAAACATCACTTTGAAGTTTTGATTTCAAT
TTCTCGAAGTCACAATATTTCTTCAGATTGTCATTTTCCATTCTCAGTTT
ATCCATTTCATATTGAGTTTTCAAGTTCTTGATTTCTTCCCTGAGGAGGT
TCACTACACTATCAACATTACCAACTACCCTAACTGAATCTATTTCTTGA
TTTGAATCTTCTCAGAATCCAGCAGCATTTTGTTGATCAATCTTTNCATT
TCTTGATTTGAATCTTCTCGGAATCCAGCAGCATTTTGTTGATCAATCTT
TCTCTCACTGTGAGCATTATGTATTTTCAGATTGTCGTTTTGAATTTGTG
ATGCcattgttaaaaagataatgtTCACACATACAGTAGTCTTACAGAGA
AGGTCTGCAAAACATTTTGAGCATGAAAACTTGTACGATATCTGCGTTTA
TTTGCAGTGCAAGTGTGAAAATATCGAACCAACAGGCAGTATATTAAAAC
ACTGGAAACAGAACTTCTTTCATTCACACCATTGTAGTCCAGTAGAATTT
TGAGTCGACCtagaaaaaatttgttgttgaCATCGAAAGCAAATGGATCA
AACCAGACTGtgttaaaacaataaaaagcaAGCAGTTTAAGCCCCTGATT
TTTTTGGGGGTGCCAAAAGAACAGTGGTGCCAAAAGACCACTGGTACCAA
AAGACCAAGGATGCAAAGAGGCGTCCCTGATTACAAATTTTTCGGCGCCT
CTTTggtaatttaatttgttttctaGTAAATACTTTCATAAGAGCAAGAA
GCGAACTTTTAAGAAAACTACAGTATGTATCAAAAATTACCACGGCGAAA
TCAAACTACTAAAAATGCCAGGAAAAATTAACAATAAATAAAccaatatt
gacaacaaattaTCACCGATCTACCACTACCAGACCATTCATTTATCGAC
TagatccatgtatctatatagcATTGATAACTCCaatcatattttttatt
ttcccttttttaaatatactttTTTGATTCTG Run BLAST on NCBI transcript from alignment at sc0000670:99766..102197+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028195 ID=TCONS_00028195|Name=TCONS_00028195|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at sc0000670:99766..102197+ (Clytia hemisphaerica)
GCTTGCTTGAAattgttttataaaaaatacacTACATGGTAAAAAACTAA
AGGTTCGtcggaaataaaaaaatacagttAACCCTCACTAACTCGAACGG
GAAGTCTGATtagttcaaattacagagagattcaaattatagagcGTATT
GAGGGTTTTCTTTTCACGGGAACTGATAATTAGTTCGAGTTACAGAAAGA
TATGAATAATAAAAGTTCGAATTGACAATAGTCAAAAGTATTAAAAATAA
GCTCACTTGTAGCTGAAGGTAAGAAAATTTCGGCAAATAAttaaatttgc
aaatttttggacaacttattttggcgaatcaagaaaattttcaaatttga
ggAGAATTATTTTTGGCGAATGACCCGTTGTTTGGTAGCATTTTAGCTGA
AAAGGGAGGAATTAAAACGAAATATCATTCATATTTGGCAATAGTTaaaa
ttttcgaataaaaaaaaaatctaaattgagaggtattaaattttggccag
tttggctaaattttaaggcaattcaccaaattttcttcccttaTTAAAGT
AACTAATAAACTTAATGGAATTCCGCAAAAAGCTTTTTCTTTGCGAGCAC
CAAAAAATAAAGaccttttgtatttttcacaTTAACTGCAAAGTCATAAT
TGATTTCTAGATTCCAAAGTCCCTCTTCGCAGCGTTTTTCTAAGACGATG
GATTTACGGTTATCAGTTGGGTGAAGAATTCTAACACACTTGATATCATT
CCAAATTTTTCGTAAACGGTCCCGCAAGTTTAAATGATGAACACATCCGT
CCGGTAGAAGAATTTTCGACGAAAATGCCAATCTGAAAATTAATACTTCT
CCTGCTGTTCGACCACTAATTAAATCGTAATTCAAAGCCTGGAACATTTT
CTCGTAGTGTGGATAGTGTTCTTCCTTATCGAGAACATAAAGAGTAAATT
CCACCAAGTCGGGAAAAGGTGTTTTCATAAAATCGGGTACTAATTTGGCC
GATTTTTGTGATGCTATTTCCAATTCATCAAGTGTGTTTTTTGTTATTTC
TAGCTCATCttttaatcttttattttcaaccatcaaattatcaatttttt
gatcaaatttatGGATTTCACATTCCATGATTCCattgttttttgcaatt
tcacgattttcgttttgaaattttaaaatttcagcgTGGGATTTCTTCAT
TTCAATTATACGTTTTTCAATATCATCTCTCTTGTTTTCTTTCAATTCTT
CATTTTCTGCTTTTAAAGTTTTTACATCTTGCTCCAATGTCATTTTCTCC
GCAACCAAAACATCCTTTTCAATACCAAATTGTTTCTCAGCTTTCAGTAG
AGCATTCtctgacgtcaattttaacATTTCAATGTCCTTTCGCAACTCCT
TTACTTCATTTGCTTTCTCGAAAACATCACTTTGAAGTTTTGATTTCAAT
TTCTCGAAGTCACAATATTTCTTCAGATTGTCATTTTCCATTCTCAGTTT
ATCCATTTCATATTGAGTTTTCAAGTTCTTGATTTCTTCCCTGAGGAGGT
TCACTACACTATCAACATTACCAACTACCCTAACTGAATCTATTTCTTGA
TTTGAATCTTCTCAGAATCCAGCAGCATTTTGTTGATCAATCTTTNCATT
TCTTGATTTGAATCTTCTCGGAATCCAGCAGCATTTTGTTGATCAATCTT
TCTCTCACTGTGAGCATTATGTATTTTCAGATTGTCGTTTTGAATTTGTG
ATGCcattgttaaaaagataatgtTCACACATACAGTAGTCTTACAGAGA
AGGTCTGCAAAACATTTTGAGCATGAAAACTTGTACGATATCTGCGTTTA
TTTGCAGTGCAAGTGTGAAAATATCGAACCAACAGGCAGTATATTAAAAC
ACTGGAAACAGAACTTCTTTCATTCACACCATTGTAGTCCAGTAGAATTT
TGAGTCGACCtagaaaaaatttgttgttgaCATCGAAAGCAAATGGATCA
AACCAGACTGtgttaaaacaataaaaagcaAGCAGTTTAAGCCCCTGATT
TTTTTGGGGGTGCCAAAAGAACAGTGGTGCCAAAAGACCACTGGTACCAA
AAGACCAAGGATGCAAAGAGGCGTCCCTGATTACAAATTTTTCGGCGCCT
CTTTggtaatttaatttgttttctaGTAAATACTTTCATAAGAGCAAGAA
GCGAACTTTTAAGAAAACTACAGTATGTATCAAAAATTACCACGGCGAAA
TCAAACTACTAAAAATGCCAGGAAAAATTAACAATAAATAAAccaatatt
gacaacaaattaTCACCGATCTACCACTACCAGACCATTCATTTATCGAC
TagatccatgtatctatatagcATTGATAACTCCaatcatattttttatt
ttcccttttttaaatatactttTTTGATTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028195-exon-sc0000670-1491911889:99766..102197 | TCONS_00028195-exon-sc0000670-1491911889:99766..102197 | Clytia hemisphaerica | exon |
| TCONS_00028195-exon-sc0000670-1510915933:99766..102197 | TCONS_00028195-exon-sc0000670-1510915933:99766..102197 | Clytia hemisphaerica | exon |
| TCONS_00028195-exon-sc0000670-1575043694:99766..102197 | TCONS_00028195-exon-sc0000670-1575043694:99766..102197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:99766..102197 + |
Blast
The following BLAST results are available for this feature:
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