TCONS_00028191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028191
Unique NameTCONS_00028191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028191 ID=TCONS_00028191|Name=TCONS_00028191|organism=Clytia hemisphaerica|type=transcript|length=1315bp
GACTGATATTCTCTACGGAATGGCCaatcaattttcaacttttaaccAAA
CCGCGATAAACTTTTTGTgtccaatttctttttttttttaattagggAAG
CGTTGGGACCTGAAAACTTATAAAGGATATAGAAAGTGTGTCCGAGAAAA
GTAttcgataaacaaatttgagttgTAAAATCAGCCTTACCAAAAGTTAT
TGTTTATTTTACGTAATCTGAAATAGGTTTTTATTGGTAACAATGAGAGG
TGGTTGGTCTGTAACCAAACTTTTGAGTTCCATATGTGCTATCACGGCCT
TTATTTTAGTTGGAATCGGCGCCCCTTTACTTGGTATTGGACTAATGGCG
GATATAAATACAGTAAAAACAAACCCTGACTGTCTTCCGAGTTTAGGAGA
ATGTCAGTATATCAAGAATCCATCAGATATCGAATCAAAAcatagcaaaa
tcaaaaacggGGGAATATGTCTTGGTGTCGCCGTTTTACTTCTTATGCTG
ACAGGGGTTTGCTCTTCGTGTGATAAGAGAGAGCGACAACACCCTCCGTC
TGTAGTGGTCTATCAGAAGAAAGATAGAAACCAATCCAAGACAAAGAATG
GATCAAAAGAGTCTTTAAAGCTAGAGACCAATCCTTTATTGACAAGACAT
TTGGATGTACATCCAACTCAGCAGAGACCAGTATCCTACCATTTCCCGCC
ACCAGAAGCCTATCCACCCCAAGTGAATGGGCGGCCCGTGTCTTCATTCC
CTGCTTATGCTCAGTACATCTACGTCCCTATTGCAGAACCACCTACAGAC
CCGACATCAGCTGGAAGTAACATAAGCCATGGGAGTAACCAGACATCTAC
ATCGGCTGAAGGAGTACCTCCACCTTTAGGACCTGTATTCCCACCAACTT
TCCAACACCAGCCACCGTACCTATATCAGTCATCGTCATGTCAGAGTCCA
GCACCAACTATACTTTTGCCTTACCCTATCAGTCAGTTACCCCCTCTCAG
CCCTGGGACACCGTCACCCCTTGTCAAACACATCTCTTTCACTCAAGACA
ATCCTCCGACCTCACCAAGAGATAACACAGAAAGCGTTGATGAAGGAATA
CCCATAGTAACAAATTTCCAAACAACCAGGCTCGACAATGTTGGTTGCAA
TGCAGAACCAAAAACCAGAGAAGTAACATTCTCCGCACACCCACCACCAA
ATTATGAGGATGCAGCAAAGATATAATTCATGAATAATCTACCACACAAA
ACACCTTGTAGCTTGTACTGGCCAACCGTGTGATTTTGGTCTCATGTTTG
GAACAGTGTGCTGCA
Run BLAST on NCBI

protein sequence of TCONS_00028191-protein

>TCONS_00028191-protein ID=TCONS_00028191-protein|Name=TCONS_00028191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MRGGWSVTKLLSSICAITAFILVGIGAPLLGIGLMADINTVKTNPDCLPS
LGECQYIKNPSDIESKHSKIKNGGICLGVAVLLLMLTGVCSSCDKRERQH
PPSVVVYQKKDRNQSKTKNGSKESLKLETNPLLTRHLDVHPTQQRPVSYH
FPPPEAYPPQVNGRPVSSFPAYAQYIYVPIAEPPTDPTSAGSNISHGSNQ
TSTSAEGVPPPLGPVFPPTFQHQPPYLYQSSSCQSPAPTILLPYPISQLP
PLSPGTPSPLVKHISFTQDNPPTSPRDNTESVDEGIPIVTNFQTTRLDNV
GCNAEPKTREVTFSAHPPPNYEDAAKI
Run BLAST on NCBI

transcript from alignment at sc0000670:71981..74353+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028191 ID=TCONS_00028191|Name=TCONS_00028191|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at sc0000670:71981..74353+ (Clytia hemisphaerica)
GACTGATATTCTCTACGGAATGGCCaatcaattttcaacttttaaccAAA
CCGCGATAAACTTTTTGTgtccaatttctttttttttttaattagggAAG
CGTTGGGACCTGAAAACTTATAAAGGATATAGAAAGTGTGTCCGAGAAAA
GTAttcgataaacaaatttgagttgTAAAATCAGCCTTACCAAAAGTTAT
TGTTTATTTTACGTAATCTGAAATAGGTTTTTATTGGTAACAATGAGAGG
TGGTTGGTCTGTAACCAAACTTTTGAGTTCCATATGTGCTATCACGGCCT
TTATTTTAGTTGGAATCGGCGCCCCTTTACTTGGTATTGGACTAATGGCG
GATATAAATACAGTAAAAACAAACCCTGACTGTCTTCCGAGTTTAGGTGA
GTGATTTTtatttaaatctaaaaaaaaatggaGAAATTCCTTTAGAATCG
GGAGATACTAAAGCCCTCTTAAAAAATATGTCAATAGGGCAAAAccacga
aaattaattcccgcgaaatgcgatttttcgaattttttttttcgatggcg
aaaattagttcccgttAAATTTATTTCTTGAGTAAGATTGCAATAAGAAT
GAAGGCGATTCTGCTTTTTTAAAACGAAATAGCCAGTACCCCCTATGttt
tgagagaaatttccaCTGTTCTGGTGTTGTGTTTAGTGTCCGGAGAGTCG
ACTAATATTTTTCCCGGGGTGGAAACAAATTCAGCGGTCAGAGCAAGGTT
TTTCGCCTGAGACAAAAAATCGATTTTACACAACAAACTAACACATATTC
TTGAAATTCTGGTGAATTATACAAAACTTTGAGACGGTAAAGCTCTTTAC
ATACTTCACTGAGAAAGAAGGATTTTTATACTGAACAAATTGTAACGGGT
TCGAGAGAGTTAGAAATGGTAATGTATCGTAATGATTTCAACTCATCCTC
TATTGTTCGAGTTAAACTTAAAGATACTCTTTTGCACTTTTCCATTATAG
GAGAATGTCAGTATATCAAGAATCCATCAGATATCGAATCAAAAcatagc
aaaatcaaaaacggGGGAATATGTCTTGGTGTCGCCGTTTTACTTCTTAT
GCTGACAGGGGTTTGCTCTTCGTGTGATAAGAGAGAGCGACAACACCCTC
CGTCTGTAGTGGTCTATCAGAAGAAAGATAGAAACCAATCCAAGACAAAG
AATGGATCAAAAGAGTCTTTAAAGCTAGAGACCAATCCTTTATTGACAAG
ACATTTGGATGTACATCCAACTCAGCAGAGACCAGTATCCTACCATTTCC
CGCCACCAGAAGCCTATCCACCCCAAGTGAATGGGCGGCCCGTGTCTTCA
TTCCCTGCTTATGCTCAGTACATCTACGTCCCTATTGCAGAACCACCTAC
AGACCCGACATCAGCTGGAAGTAACATAAGCCATGGGAGTAACCAGACAT
CTACATCGGCTGAAGGAGTACCTCCACCTTTAGGACCTGTATTCCCACCA
ACTTTCCAACACCAGCCACCGTACCTATATCAGTCATCGTCATGTCAGAG
TCCAGCACCAACTATACTTTTGCCTTACCCTATCAGTCAGTTACCCCCTC
TCAGCCCTGGGACACCGTCACCCCTTGTCAAACACATCTCTTTCACTCAA
GACAATCCTCCGACCTCACCAAGAGATAACACAGAAAGCGTTGATGAAGG
AATACCCATAGTAACAAATTTCCAAACAACCAGGCTCGACAATGTTGGTT
GCAATGCAGGTAAGCCATTGCTAGGCTATTCCAACCTCATCTCCAGGCCT
TATTGTGGATGATATCAACCCTGAGATCGGAGGTGAGGCTTGAGCTTGAA
ATTCTATTAGATTCAATAGCCTGTAGTTTATAGTATTTGTAATCCTTTAA
TTGTTATTTTGGACCCTTTAAGATGGGCAAGACAAGAGTAAAAGGCTACT
CTCAGATAATATGTAGGGTCCACGAACGAAGTGCCTTCTCCTTTTTCTGA
GAAGGTCCTTGAAACTTGTTTACAGACAAAACATCGTTTCATCCCTGTCC
TCgtcatttaaataaaaaatcgaaaaagtaCATAAAAAGATGGCATAAGT
AAGGAATTAGTCAATATTCATCTGTCCCgcttttttctaagaatatcAGG
TTCAATTTGAAGACAAGTAAATTTTTGGTTCaatcttcaatttttcattt
ttcatttctcaaGAACCAAAAACCAGAGAAGTAACATTCTCCGCACACCC
ACCACCAAATTATGAGGATGCAGCAAAGATATAATTCATGAATAATCTAC
CACACAAAACACCTTGTAGCTTGTACTGGCCAACCGTGTGATTTTGGTCT
CATGTTTGGAACAGTGTGCTGCA

Coding sequence (CDS) from alignment at sc0000670:71981..74353+

>TCONS_00028191 ID=TCONS_00028191|Name=TCONS_00028191|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at sc0000670:71981..74353+ (Clytia hemisphaerica)
ATGAGAGGTGGTTGGTCTGTAACCAAACTTTTGAGTTCCATATGTGCTAT
CACGGCCTTTATTTTAGTTGGAATCGGCGCCCCTTTACTTGGTATTGGAC
TAATGGCGGATATAAATACAGTAAAAACAAACCCTGACTGTCTTCCGAGT
TTAGGAGAATGTCAGTATATCAAGAATCCATCAGATATCGAATCAAAAca
tagcaaaatcaaaaacggGGGAATATGTCTTGGTGTCGCCGTTTTACTTC
TTATGCTGACAGGGGTTTGCTCTTCGTGTGATAAGAGAGAGCGACAACAC
CCTCCGTCTGTAGTGGTCTATCAGAAGAAAGATAGAAACCAATCCAAGAC
AAAGAATGGATCAAAAGAGTCTTTAAAGCTAGAGACCAATCCTTTATTGA
CAAGACATTTGGATGTACATCCAACTCAGCAGAGACCAGTATCCTACCAT
TTCCCGCCACCAGAAGCCTATCCACCCCAAGTGAATGGGCGGCCCGTGTC
TTCATTCCCTGCTTATGCTCAGTACATCTACGTCCCTATTGCAGAACCAC
CTACAGACCCGACATCAGCTGGAAGTAACATAAGCCATGGGAGTAACCAG
ACATCTACATCGGCTGAAGGAGTACCTCCACCTTTAGGACCTGTATTCCC
ACCAACTTTCCAACACCAGCCACCGTACCTATATCAGTCATCGTCATGTC
AGAGTCCAGCACCAACTATACTTTTGCCTTACCCTATCAGTCAGTTACCC
CCTCTCAGCCCTGGGACACCGTCACCCCTTGTCAAACACATCTCTTTCAC
TCAAGACAATCCTCCGACCTCACCAAGAGATAACACAGAAAGCGTTGATG
AAGGAATACCCATAGTAACAAATTTCCAAACAACCAGGCTCGACAATGTT
GGTTGCAATGCAGAACCAAAAACCAGAGAAGTAACATTCTCCGCACACCC
ACCACCAAATTATGAGGATGCAGCAAAGATATAAATGAGAGGTGGTTGGT
CTGTAACCAAACTTTTGAGTTCCATATGTGCTATCACGGCCTTTATTTTA
GTTGGAATCGGCGCCCCTTTACTTGGTATTGGACTAATGGCGGATATAAA
TACAGTAAAAACAAACCCTGACTGTCTTCCGAGTTTAGGAGAATGTCAGT
ATATCAAGAATCCATCAGATATCGAATCAAAAcatagcaaaatcaaaaac
ggGGGAATATGTCTTGGTGTCGCCGTTTTACTTCTTATGCTGACAGGGGT
TTGCTCTTCGTGTGATAAGAGAGAGCGACAACACCCTCCGTCTGTAGTGG
TCTATCAGAAGAAAGATAGAAACCAATCCAAGACAAAGAATGGATCAAAA
GAGTCTTTAAAGCTAGAGACCAATCCTTTATTGACAAGACATTTGGATGT
ACATCCAACTCAGCAGAGACCAGTATCCTACCATTTCCCGCCACCAGAAG
CCTATCCACCCCAAGTGAATGGGCGGCCCGTGTCTTCATTCCCTGCTTAT
GCTCAGTACATCTACGTCCCTATTGCAGAACCACCTACAGACCCGACATC
AGCTGGAAGTAACATAAGCCATGGGAGTAACCAGACATCTACATCGGCTG
AAGGAGTACCTCCACCTTTAGGACCTGTATTCCCACCAACTTTCCAACAC
CAGCCACCGTACCTATATCAGTCATCGTCATGTCAGAGTCCAGCACCAAC
TATACTTTTGCCTTACCCTATCAGTCAGTTACCCCCTCTCAGCCCTGGGA
CACCGTCACCCCTTGTCAAACACATCTCTTTCACTCAAGACAATCCTCCG
ACCTCACCAAGAGATAACACAGAAAGCGTTGATGAAGGAATACCCATAGT
AACAAATTTCCAAACAACCAGGCTCGACAATGTTGGTTGCAATGCAGAAC
CAAAAACCAGAGAAGTAACATTCTCCGCACACCCACCACCAAATTATGAG
GATGCAGCAAAGATATAAATGAGAGGTGGTTGGTCTGTAACCAAACTTTT
GAGTTCCATATGTGCTATCACGGCCTTTATTTTAGTTGGAATCGGCGCCC
CTTTACTTGGTATTGGACTAATGGCGGATATAAATACAGTAAAAACAAAC
CCTGACTGTCTTCCGAGTTTAGGAGAATGTCAGTATATCAAGAATCCATC
AGATATCGAATCAAAAcatagcaaaatcaaaaacggGGGAATATGTCTTG
GTGTCGCCGTTTTACTTCTTATGCTGACAGGGGTTTGCTCTTCGTGTGAT
AAGAGAGAGCGACAACACCCTCCGTCTGTAGTGGTCTATCAGAAGAAAGA
TAGAAACCAATCCAAGACAAAGAATGGATCAAAAGAGTCTTTAAAGCTAG
AGACCAATCCTTTATTGACAAGACATTTGGATGTACATCCAACTCAGCAG
AGACCAGTATCCTACCATTTCCCGCCACCAGAAGCCTATCCACCCCAAGT
GAATGGGCGGCCCGTGTCTTCATTCCCTGCTTATGCTCAGTACATCTACG
TCCCTATTGCAGAACCACCTACAGACCCGACATCAGCTGGAAGTAACATA
AGCCATGGGAGTAACCAGACATCTACATCGGCTGAAGGAGTACCTCCACC
TTTAGGACCTGTATTCCCACCAACTTTCCAACACCAGCCACCGTACCTAT
ATCAGTCATCGTCATGTCAGAGTCCAGCACCAACTATACTTTTGCCTTAC
CCTATCAGTCAGTTACCCCCTCTCAGCCCTGGGACACCGTCACCCCTTGT
CAAACACATCTCTTTCACTCAAGACAATCCTCCGACCTCACCAAGAGATA
ACACAGAAAGCGTTGATGAAGGAATACCCATAGTAACAAATTTCCAAACA
ACCAGGCTCGACAATGTTGGTTGCAATGCAGAACCAAAAACCAGAGAAGT
AACATTCTCCGCACACCCACCACCAAATTATGAGGATGCAGCAAAGATAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015960XLOC_015960Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028191-proteinTCONS_00028191-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028191-exon-sc0000670-1491911889:71981..72376TCONS_00028191-exon-sc0000670-1491911889:71981..72376Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1510915933:71981..72376TCONS_00028191-exon-sc0000670-1510915933:71981..72376Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1575043694:71981..72376TCONS_00028191-exon-sc0000670-1575043694:71981..72376Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1491911889:72981..73739TCONS_00028191-exon-sc0000670-1491911889:72981..73739Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1510915933:72981..73739TCONS_00028191-exon-sc0000670-1510915933:72981..73739Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1575043694:72981..73739TCONS_00028191-exon-sc0000670-1575043694:72981..73739Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1491911889:74194..74353TCONS_00028191-exon-sc0000670-1491911889:74194..74353Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1510915933:74194..74353TCONS_00028191-exon-sc0000670-1510915933:74194..74353Clytia hemisphaericaexon
TCONS_00028191-exon-sc0000670-1575043694:74194..74353TCONS_00028191-exon-sc0000670-1575043694:74194..74353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:71981..74353 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0962326	0.0625613	0.0726396	0.0355333	0.0865167	0.0683666	0	0.0772181	0	0.234377	0	0.0213635	0.0213338	0.288019	0	0.0781886	1.1077	1.50558	0	0.0356823	3.19448	3.17682	0.478133	0.702195	1.82533	1.78275	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top