TCONS_00028187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028187
Unique NameTCONS_00028187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028187 ID=TCONS_00028187|Name=TCONS_00028187|organism=Clytia hemisphaerica|type=transcript|length=1188bp
GCAAatctttaactttttattttagcgTCTAAATCTTTAGTTACTAAAAT
TAAGGGCGTAAAAAATGGTTGATTTGCAGAGCAGAACACACTTCAGGTAA
TTCCCATACCAAAACTTtgcaaataaacaaaaagttagttaaataaacaa
taaaacacATGTTTGGGTATTCTGGCATATATTAAACTAATGATGTCACT
TTCGGTTTTGACCTAAATTTGAACTGACTCCAAACATCCAATATTAAGCC
accaaaaacaatcaaaagaaatGCAAACATCGATAAAGTCACCACATGGG
AAAACAAGATTGCTGACAAAAATAGCTGGAAGAATTTTCTCACGTTGGTG
ATGATGGAACATGTCAAAGGGCCAAACGTTGAAATggtgtaaaaaataaa
actctgCCCAATGGCACCTGTTATACCGATtaataataaatataaaatgA
CTGATGGGTTTTCCATGAAGAATTTGAGGAAGCCGGTCAATTCATTGGTG
AAGATGATACCAGCGGTAAGGAGACAACAAGAATACAAGTTGATCTGATA
AATCATTTGATTTGTATTCAACGTGTATTTAGACCTTGTTCTATCTTGTA
TGTATCCCATTAAAGCATCGAAAAGTAATGATATGAAAACCAAGATAAGA
CCAAATAGATTATCGAAAAATAATACATCTGGATGTCGACTTGATTCTGC
TTTGACCTGATACTGTTGATACATAAAACCCATTATACCAAAAACAATGA
TGAGAGTTGATAAAATACGACTTGGATGATGTACTCCTTTAGATAGGCAA
ATTATACCagcaaataaaatgaaaataggtTTGCTCGATTTCAAAACTAA
TTGTGTTGGGTATGGAATATATGCCAAAGCAGCATTTGCAGATACCATTG
AAGCCATCTGAAAGAAACTGCAAAGAAAATAAAACCATTTGGGAATGGAT
CCAACATGCTTCTCCTTGGATCGGAGGATTAATATCTTGCCAAATATTGC
ATTACAGAAGGACGGGGTCAATATCATTACCATATagaaagtaaaaatct
tttttccgaAAGTTGTGGTCAAGTATTCAATAGCATAACCATTGATCAGG
TAGCTGAAAAATATCCCACTGAAACATAACAGTAGTTGTGAAAGCATGCT
ATGAAAGCCCTTCTTTTTTTTGTACTTTCGTTTTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00028187-protein

>TCONS_00028187-protein ID=TCONS_00028187-protein|Name=TCONS_00028187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
KKRKYKKKKGFHSMLSQLLLCFSGIFFSYLINGYAIEYLTTTFGKKIFTF
YMVMILTPSFCNAIFGKILILRSKEKHVGSIPKWFYFLCSFFQMASMVSA
NAALAYIPYPTQLVLKSSKPIFILFAGIICLSKGVHHPSRILSTLIIVFG
IMGFMYQQYQVKAESSRHPDVLFFDNLFGLILVFISLLFDALMGYIQDRT
RSKYTLNTNQMIYQINLYSCCLLTAGIIFTNELTGFLKFFMENPSVILYL
LLIGITGAIGQSFIFYTISTFGPLTCSIITNVRKFFQLFLSAILFSHVVT
LSMFAFLLIVFGGLILDVWSQFKFRSKPKVTSLV
Run BLAST on NCBI

transcript from alignment at sc0000667:112333..113520

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028187 ID=TCONS_00028187|Name=TCONS_00028187|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at sc0000667:112333..113520 (Clytia hemisphaerica)
ATAAAAAACGAAAGTACAAAAAAAAGAAGGGCTTTCATAGCATGCTTTCA
CAACTACTGTTATGTTTCAGTGGGATATTTTTCAGCTACCTGATCAATGG
TTATGCTATTGAATACTTGACCACAACTTtcggaaaaaagatttttactt
tctATATGGTAATGATATTGACCCCGTCCTTCTGTAATGCAATATTTGGC
AAGATATTAATCCTCCGATCCAAGGAGAAGCATGTTGGATCCATTCCCAA
ATGGTTTTATTTTCTTTGCAGTTTCTTTCAGATGGCTTCAATGGTATCTG
CAAATGCTGCTTTGGCATATATTCCATACCCAACACAATTAGTTTTGAAA
TCGAGCAAacctattttcattttatttgctGGTATAATTTGCCTATCTAA
AGGAGTACATCATCCAAGTCGTATTTTATCAACTCTCATCATTGTTTTTG
GTATAATGGGTTTTATGTATCAACAGTATCAGGTCAAAGCAGAATCAAGT
CGACATCCAGATGTATTATTTTTCGATAATCTATTTGGTCTTATCTTGGT
TTTCATATCATTACTTTTCGATGCTTTAATGGGATACATACAAGATAGAA
CAAGGTCTAAATACACGTTGAATACAAATCAAATGATTTATCAGATCAAC
TTGTATTCTTGTTGTCTCCTTACCGCTGGTATCATCTTCACCAATGAATT
GACCGGCTTCCTCAAATTCTTCATGGAAAACCCATCAGTcattttatatt
tattattaATCGGTATAACAGGTGCCATTGGGcagagttttattttttac
accATTTCAACGTTTGGCCCTTTGACATGTTCCATCATCACCAACGTGAG
AAAATTCTTCCAGCTATTTTTGTCAGCAATCTTGTTTTCCCATGTGGTGA
CTTTATCGATGTTTGCatttcttttgattgtttttggtGGCTTAATATTG
GATGTTTGGAGTCAGTTCAAATTTAGGTCAAAACCGAAAGTGACATCATT
AGTTTAATATATGCCAGAATACCCAAACATgtgttttattgtttatttaa
ctaactttttgtttatttgcaAAGTTTTGGTATGGGAATTACCTGAAGTG
TGTTCTGCTCTGCAAATCAACCATTTTTTACGCCCTTAATTTTAGTAACT
AAAGATTTAGAcgctaaaataaaaagttaaagatTTGC

Coding sequence (CDS) from alignment at sc0000667:112333..113520

>TCONS_00028187 ID=TCONS_00028187|Name=TCONS_00028187|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000667:112333..113520 (Clytia hemisphaerica)
AAAAAACGAAAGTACAAAAAAAAGAAGGGCTTTCATAGCATGCTTTCACA
ACTACTGTTATGTTTCAGTGGGATATTTTTCAGCTACCTGATCAATGGTT
ATGCTATTGAATACTTGACCACAACTTtcggaaaaaagatttttactttc
tATATGGTAATGATATTGACCCCGTCCTTCTGTAATGCAATATTTGGCAA
GATATTAATCCTCCGATCCAAGGAGAAGCATGTTGGATCCATTCCCAAAT
GGTTTTATTTTCTTTGCAGTTTCTTTCAGATGGCTTCAATGGTATCTGCA
AATGCTGCTTTGGCATATATTCCATACCCAACACAATTAGTTTTGAAATC
GAGCAAacctattttcattttatttgctGGTATAATTTGCCTATCTAAAG
GAGTACATCATCCAAGTCGTATTTTATCAACTCTCATCATTGTTTTTGGT
ATAATGGGTTTTATGTATCAACAGTATCAGGTCAAAGCAGAATCAAGTCG
ACATCCAGATGTATTATTTTTCGATAATCTATTTGGTCTTATCTTGGTTT
TCATATCATTACTTTTCGATGCTTTAATGGGATACATACAAGATAGAACA
AGGTCTAAATACACGTTGAATACAAATCAAATGATTTATCAGATCAACTT
GTATTCTTGTTGTCTCCTTACCGCTGGTATCATCTTCACCAATGAATTGA
CCGGCTTCCTCAAATTCTTCATGGAAAACCCATCAGTcattttatattta
ttattaATCGGTATAACAGGTGCCATTGGGcagagttttattttttacac
cATTTCAACGTTTGGCCCTTTGACATGTTCCATCATCACCAACGTGAGAA
AATTCTTCCAGCTATTTTTGTCAGCAATCTTGTTTTCCCATGTGGTGACT
TTATCGATGTTTGCatttcttttgattgtttttggtGGCTTAATATTGGA
TGTTTGGAGTCAGTTCAAATTTAGGTCAAAACCGAAAGTGACATCATTAG
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015956XLOC_015956Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028187-proteinTCONS_00028187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028187-exon-sc0000667-1491911889:112333..113520TCONS_00028187-exon-sc0000667-1491911889:112333..113520Clytia hemisphaericaexon
TCONS_00028187-exon-sc0000667-1510915933:112333..113520TCONS_00028187-exon-sc0000667-1510915933:112333..113520Clytia hemisphaericaexon
TCONS_00028187-exon-sc0000667-1575043694:112333..113520TCONS_00028187-exon-sc0000667-1575043694:112333..113520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000667supercontigsc0000667:112333..113520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.978446	1.02482	0.697533	0.361285	8.74773	5.09754	5.59088	5.88838	2.22925	4.34998	3.41447	1.32741	2.12091	1.10129	1.31696	1.56788	1.36021	1.50571	0.616362	0.685289	0.700754	0.717787	3.24095	3.17315	1.90649	3.81969	1.54041	1.11365	3.09711	2.00802
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013657UAA
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
Blast
[Close]
BLAST of TCONS_00028187 vs. Swiss-Prot (Human)
Match: S35B1 (Solute carrier family 35 member B1 OS=Homo sapiens GN=SLC35B1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.604e-52
Identity = 125/322 (38.82%), Postives = 176/322 (54.66%), Query Frame = -3 
Query:  191 QLLLCFSGIFFSYLINGYAIEYLTT-TFGK----KIFTFYMVMILTPSFCNAIFGKILILRSKEKHVGSIPKWFYFLCSFFQMASMVSANAALAYIPYPTQLVLKSSKPIFILFAGIICLSKGVHHP-SRILSTLIIVFGIMGFMYQQYQVKAESSRHPDVLFFDNLFGLILVFISLLFDALMGYIQDRTRSKYTLNTNQMIYQINLYSCCLLTAGIIFTNELTGFLKFFMENPSVILYLLLIGITGAIGQSFIFYTISTFGPLTCSIITNVRKFFQLFLSAILFSHVVTLSMFAFLLIVFGGLILDVWSQFKFRSKPKVTS 1138
            +L LCF G+F  Y   G   E +T   +G+    + FTF + ++      NA+F KILI       V     W Y  CS   + +MVS+N+AL ++ YPTQ++ KS KPI ++  G+  L K   +P ++ L  L+IV G+  FMY+  +V                +G +L+ +SL  D L G  QD  R+ Y   +N M+  INL+S  LL  GI+FT EL  FL F    P++I  +LL G+T A+GQSFIF T+  FGPLTCSIIT  RKFF +  S ILF++ ++   +   ++VF GL LD     KF    K TS
Sbjct:   13 RLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKK--KYPLAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVG-------YGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLGMGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDA----KFGKGAKKTS 321
The following BLAST results are available for this feature:
BLAST of TCONS_00028187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35B13.604e-5238.82Solute carrier family 35 member B1 OS=Homo sapiens... [more]
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