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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028182 ID=TCONS_00028182|Name=TCONS_00028182|organism=Clytia hemisphaerica|type=transcript|length=2080bpRun BLAST on NCBI protein sequence of TCONS_00028182-protein >TCONS_00028182-protein ID=TCONS_00028182-protein|Name=TCONS_00028182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp FLACKSNAILFMTDEFVQKYDDSSSDDIIPISPQLKLLNDFDYDFEMQTIRun BLAST on NCBI transcript from alignment at sc0000667:178368..183451- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028182 ID=TCONS_00028182|Name=TCONS_00028182|organism=Clytia hemisphaerica|type=transcript|length=5084bp|location=Sequence derived from alignment at sc0000667:178368..183451- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000667:178368..183451- >TCONS_00028182 ID=TCONS_00028182|Name=TCONS_00028182|organism=Clytia hemisphaerica|type=CDS|length=13944bp|location=Sequence derived from alignment at sc0000667:178368..183451- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028182 vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2) HSP 1 Score: 360.918 bits (925), Expect = 5.365e-108 Identity = 199/497 (40.04%), Postives = 300/497 (60.36%), Query Frame = 2
Query: 245 LAVDWVTKKIYFTDNR-NRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSL-TEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETIYNVPDI 1723
LA DW+ +K+Y+TD+ NRI V N DGS+ KVLF +++ R I + P G++++ D G+ KIERA MDG++ +++NS+I + +++D + +YWAD I N+DGT R+ +++ +P +L +F++ ++ T ++ I CN+ E ++ S I + ++ F + Q + +PC GGCS LCL+ P+ K Y CACPTG KLLE+G +C ++ L+ A R DLR +SLD + D +L +E ++ A+DYDPV+ IYWTDD I R+F++GSG + V+ PD +A+DW+ARNLYWT +I V+RLNG+ K++ISEDLEEPR IV+DP G +YW+DWG E PKIE A LDG++R LV+ + WPNG+ALDY +YW D T KIE + +R +E PH FG ++LGD +YWTD Q+R++ + + +E I +PD+
Sbjct: 100 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPF-----ALTLFEDILYWTDWSTHS------ILACNKYTGEGLREIH--SDIFSPMDIHA----FSQQRQPNATNPCGIDNGGCSHLCLMSPV--KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDL 575 HSP 2 Score: 293.893 bits (751), Expect = 1.483e-84 Identity = 186/534 (34.83%), Postives = 286/534 (53.56%), Query Frame = 2
Query: 122 FDYDFEMQTIYFITDSTYIYSLNIITKDTKLLLKSANEIHH--LAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQS-PCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETI 1705
DYD IY+ D + I + +A H +AVDWV + +Y+TD +RI V +G+M K+L + R I + P GY+++ D G+ KIERA +DG++ +V+VN+ +G + +++D + IYW D KIE++N DGTGR V++E IP I + + V+ T D I R ++ E +II LP K I S PC + GGCS LCL +P + CACP G++L+ D +C FL+F+ R D+R +SL+ N + +P+ K A+D+D D IYWTD +S I R F+NGS +E V+ G P+ +A+DW+ +NLYW +I VS+L+G +V++ +DL+ PR + +DP +G +YW++WG + PKI+ A +DG+ RTTLV ++ NG+ +DY +R LYW D T+ IE ++ R + PH FG++ D IYWTD +R++ + + T Q TI
Sbjct: 365 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-----IFGFTLLGDYVYWT------DWQRRSIERVHKRSAER-------EVIIDQLPDLMGLK--ATNVHRVIGSNPCAEENGGCSHLCLYRP----QGLRCACPIGFELISDMKTCIVP-EAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERAN-KTSGQNRTI 868 HSP 3 Score: 228.794 bits (582), Expect = 1.335e-62 Identity = 149/489 (30.47%), Postives = 249/489 (50.92%), Query Frame = 2
Query: 245 LAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIMEIPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYT------KPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTDRQQRTLYQWDVNTK 1687
+AVDW+ K +Y+ D NRI V DG +VL + + + R + + P G++++ + G KI+RA MDG+ +V ++G + +++D +YW D+ IE NM G REVI + + +G L +++ ++ T NRT+++ D+ ++ L F+S S++S + C G CS LCL P+ + C CP Y L D +CS + FL+F+ + + + +D Q D ILP+ +N++A+DYDP+DK +YW D +I + +GS TV+ +P L+ID +R +YWTC I V+RL+G S V++ + + PR +VV+P G +Y+++ E +PKIE A LDGT R L + P +ALD + L+W D +IE L+ R LE + G+++ + +YW D+QQ+ + + D+ +
Sbjct: 710 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFG----LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDY-----VMDILVFHS--------SRQSGWNECASSNGHCSHLCLAVPV---GGFVCGCPAHYSLNADNRTCSAP-TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGR 1175 HSP 4 Score: 164.466 bits (415), Expect = 7.088e-42 Identity = 100/272 (36.76%), Postives = 152/272 (55.88%), Query Frame = 2
Query: 977 SKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGS-GVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTDRQQRTLYQWDVNT--KLQE--ETIYNVPDIKXALWC*LKHSFSHNRQ 1774
+ L++A R DLR+V K ++ + V ++ AVD+ +IYW+D +S I RT N + V+ V+ G PD LA DW+ LYWT E +I VS L+GS KV+ ++L++PR I +DP G +YW+DWGE PKIE A +DG++R +++ +I WPNG+ LDY+ + LYW D + I +L R + GS PH F +++ D++YWTD ++ + T L+E I++ DI H+FS RQ
Sbjct: 20 APLLLYANRRDLRLVDA-TNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDI---------HAFSQQRQ 279 The following BLAST results are available for this feature:
BLAST of TCONS_00028182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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