|
Overview
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00028182-protein ID=TCONS_00028182-protein|Name=TCONS_00028182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bpRun BLAST on NCBI Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
Blast
BLAST of TCONS_00028182-protein vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2) HSP 1 Score: 360.533 bits (924), Expect = 6.317e-110 Identity = 199/497 (40.04%), Postives = 300/497 (60.36%), Query Frame = 0
Query: 82 LAVDWVTKKIYFTDNR-NRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSL-TEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETIYNVPDI 574
LA DW+ +K+Y+TD+ NRI V N DGS+ KVLF +++ R I + P G++++ D G+ KIERA MDG++ +++NS+I + +++D + +YWAD I N+DGT R+ +++ +P +L +F++ ++ T ++ I CN+ E ++ S I + ++ F + Q + +PC GGCS LCL+ P+ K Y CACPTG KLLE+G +C ++ L+ A R DLR +SLD + D +L +E ++ A+DYDPV+ IYWTDD I R+F++GSG + V+ PD +A+DW+ARNLYWT +I V+RLNG+ K++ISEDLEEPR IV+DP G +YW+DWG E PKIE A LDG++R LV+ + WPNG+ALDY +YW D T KIE + +R +E PH FG ++LGD +YWTD Q+R++ + + +E I +PD+
Sbjct: 100 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPF-----ALTLFEDILYWTDWSTHS------ILACNKYTGEGLREIH--SDIFSPMDIHA----FSQQRQPNATNPCGIDNGGCSHLCLMSPV--KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDL 575 HSP 2 Score: 293.893 bits (751), Expect = 1.406e-86 Identity = 186/534 (34.83%), Postives = 286/534 (53.56%), Query Frame = 0
Query: 41 FDYDFEMQTIYFITDSTYIYSLNIITKDTKLLLKSANEIH--HLAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQS-PCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETI 568
DYD IY+ D + I + +A H +AVDWV + +Y+TD +RI V +G+M K+L + R I + P GY+++ D G+ KIERA +DG++ +V+VN+ +G + +++D + IYW D KIE++N DGTGR V++E IP I + + V+ T D I R ++ E +II LP K I S PC + GGCS LCL +P + CACP G++L+ D +C FL+F+ R D+R +SL+ N + +P+ K A+D+D D IYWTD +S I R F+NGS +E V+ G P+ +A+DW+ +NLYW +I VS+L+G +V++ +DL+ PR + +DP +G +YW++WG + PKI+ A +DG+ RTTLV ++ NG+ +DY +R LYW D T+ IE ++ R + PH FG++ D IYWTD +R++ + + T Q TI
Sbjct: 365 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-----IFGFTLLGDYVYWT------DWQRRSIERVHKRSAER-------EVIIDQLPDLMGLK--ATNVHRVIGSNPCAEENGGCSHLCLYRP----QGLRCACPIGFELISDMKTCIVP-EAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERAN-KTSGQNRTI 868 HSP 3 Score: 229.18 bits (583), Expect = 2.024e-64 Identity = 149/489 (30.47%), Postives = 249/489 (50.92%), Query Frame = 0
Query: 82 LAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIMEIPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYT------KPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTDRQQRTLYQWDVNTK 562
+AVDW+ K +Y+ D NRI V DG +VL + + + R + + P G++++ + G KI+RA MDG+ +V ++G + +++D +YW D+ IE NM G REVI + + +G L +++ ++ T NRT+++ D+ ++ L F+S S++S + C G CS LCL P+ + C CP Y L D +CS + FL+F+ + + + +D Q D ILP+ +N++A+DYDP+DK +YW D +I + +GS TV+ +P L+ID +R +YWTC I V+RL+G S V++ + + PR +VV+P G +Y+++ E +PKIE A LDGT R L + P +ALD + L+W D +IE L+ R LE + G+++ + +YW D+QQ+ + + D+ +
Sbjct: 710 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFG----LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDY-----VMDILVFHS--------SRQSGWNECASSNGHCSHLCLAVPV---GGFVCGCPAHYSLNADNRTCSAP-TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGR 1175 HSP 4 Score: 163.696 bits (413), Expect = 2.420e-42 Identity = 89/225 (39.56%), Postives = 134/225 (59.56%), Query Frame = 0
Query: 326 SKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGS-GVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTD 548
+ L++A R DLR+V K ++ + V ++ AVD+ +IYW+D +S I RT N + V+ V+ G PD LA DW+ LYWT E +I VS L+GS KV+ ++L++PR I +DP G +YW+DWGE PKIE A +DG++R +++ +I WPNG+ LDY+ + LYW D + I +L R + GS PH F +++ D++YWTD
Sbjct: 20 APLLLYANRRDLRLVDA-TNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 241 The following BLAST results are available for this feature:
BLAST of TCONS_00028182-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens)) Total hits: 1
|
