TCONS_00028182-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028182-protein
Unique NameTCONS_00028182-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028182-protein ID=TCONS_00028182-protein|Name=TCONS_00028182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp
FLACKSNAILFMTDEFVQKYDDSSSDDIIPISPQLKLLNDFDYDFEMQTI
YFITDSTYIYSLNIITKDTKLLLKSANEIHHLAVDWVTKKIYFTDNRNRI
SVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMD
GTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVI
MEIPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQD
WFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEE
KKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDS
ILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKG
YTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDI
VVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYK
RRFLYWIDGGTSKIEYYSLTEKKRYKLEVGSPHGFGISILGDVIYWTDRQ
QRTLYQWDVNTKLQEETIYNVPDIKXALWC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015951XLOC_015951Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028182TCONS_00028182Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR032485DUF5050
IPR0110426-blade_b-propeller_TolB-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 394..436
e-value: 2.4E-6
score: 37.1
coord: 437..481
e-value: 1.6E-16
score: 70.9
coord: 111..154
e-value: 9.1E-8
score: 41.8
coord: 350..393
e-value: 0.093
score: 21.8
coord: 69..110
e-value: 7.9E-5
score: 32.1
coord: 482..524
e-value: 9.8E-10
score: 48.4
coord: 155..197
e-value: 3.3E-9
score: 46.6
IPR000033LDLR class B repeatPFAMPF00058Ldl_recept_bcoord: 457..499
e-value: 5.3E-16
score: 58.7
coord: 414..454
e-value: 6.1E-7
score: 29.7
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 457..501
score: 17.35
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 131..174
score: 12.801
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 370..413
score: 12.036
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 89..130
score: 8.648
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 414..456
score: 13.01
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 542..554
score: 5.84
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 175..202
score: 9.947
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 502..515
score: 6.211
IPR032485Domain of unknown function DUF5050PFAMPF16472DUF5050coord: 42..169
e-value: 2.6E-7
score: 30.1
NoneNo IPR availablePFAMPF14670FXa_inhibitioncoord: 282..321
e-value: 2.5E-10
score: 40.4
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 281..334
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 10..230
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 328..567
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 324..576
e-value: 6.1E-41
score: 140.1
coord: 2..323
e-value: 2.5E-39
score: 134.8

Blast
BLAST of TCONS_00028182-protein vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 6.317e-110
Identity = 199/497 (40.04%), Postives = 300/497 (60.36%), Query Frame = 0
Query:   82 LAVDWVTKKIYFTDNR-NRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSL-TEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETIYNVPDI 574
            LA DW+ +K+Y+TD+  NRI V N DGS+ KVLF +++   R I + P  G++++ D G+  KIERA MDG++  +++NS+I   + +++D  +  +YWAD     I   N+DGT R+ +++  +P        +L +F++ ++ T   ++       I  CN+   E  ++    S I   +  ++    F +  Q +  +PC    GGCS LCL+ P+  K  Y CACPTG KLLE+G +C    ++ L+ A R DLR +SLD  +  D +L +E  ++  A+DYDPV+  IYWTDD     I R+F++GSG + V+      PD +A+DW+ARNLYWT     +I V+RLNG+  K++ISEDLEEPR IV+DP  G +YW+DWG E PKIE A LDG++R  LV+  + WPNG+ALDY    +YW D  T KIE  +     +R  +E   PH FG ++LGD +YWTD Q+R++ +    +  +E  I  +PD+
Sbjct:  100 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPF-----ALTLFEDILYWTDWSTHS------ILACNKYTGEGLREIH--SDIFSPMDIHA----FSQQRQPNATNPCGIDNGGCSHLCLMSPV--KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDL 575          

HSP 2 Score: 293.893 bits (751), Expect = 1.406e-86
Identity = 186/534 (34.83%), Postives = 286/534 (53.56%), Query Frame = 0
Query:   41 FDYDFEMQTIYFITDSTYIYSLNIITKDTKLLLKSANEIH--HLAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIME--IPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQS-PCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGSPHGFGISILGDVIYWTDRQQRTLYQWDVNTKLQEETI 568
             DYD     IY+  D       + I       + +A   H   +AVDWV + +Y+TD   +RI V   +G+M K+L    +   R I + P  GY+++ D G+  KIERA +DG++ +V+VN+ +G  + +++D  +  IYW D    KIE++N DGTGR V++E  IP      I    +  + V+ T      D     I R ++   E         +II  LP     K         I S PC  + GGCS LCL +P    +   CACP G++L+ D  +C      FL+F+ R D+R +SL+  N  +  +P+   K   A+D+D  D  IYWTD +S   I R F+NGS +E V+  G   P+ +A+DW+ +NLYW      +I VS+L+G   +V++ +DL+ PR + +DP +G +YW++WG + PKI+ A +DG+ RTTLV  ++   NG+ +DY +R LYW D  T+ IE  ++    R  +    PH FG++   D IYWTD  +R++ + +  T  Q  TI
Sbjct:  365 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-----IFGFTLLGDYVYWT------DWQRRSIERVHKRSAER-------EVIIDQLPDLMGLK--ATNVHRVIGSNPCAEENGGCSHLCLYRP----QGLRCACPIGFELISDMKTCIVP-EAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERAN-KTSGQNRTI 868          

HSP 3 Score: 229.18 bits (583), Expect = 2.024e-64
Identity = 149/489 (30.47%), Postives = 249/489 (50.92%), Query Frame = 0
Query:   82 LAVDWVTKKIYFTD-NRNRISVINNDGSMLKVLFQRKIATLRGIRVSPRHGYLFFADAGDDKKIERANMDGTNNMVVVNSDIGLLSSISVDPLDDLIYWADVWEGKIEMINMDGTGREVIMEIPRNIWGAISSLAVFKEEVFLTSSGSNQDNVEAGIFRCNRTVLETTQDWFNCSMIIKGLPFYSAAKPFGKGSQESIQSPCRYKKGGCSQLCLLKPLEEKKRYACACPTGYKLLEDGTSCSTSFSKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGSGVETVIPKGYT------KPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTDRQQRTLYQWDVNTK 562
            +AVDW+ K +Y+ D   NRI V   DG   +VL  + + + R + + P  G++++ + G   KI+RA MDG+    +V  ++G  + +++D     +YW D+    IE  NM G  REVI +   + +G    L  +++ ++ T                NRT+++   D+     ++  L F+S        S++S  + C    G CS LCL  P+     + C CP  Y L  D  +CS   + FL+F+ +  +  + +D Q   D ILP+   +N++A+DYDP+DK +YW D     +I +   +GS   TV+           +P  L+ID  +R +YWTC     I V+RL+G S  V++  + + PR +VV+P  G +Y+++  E +PKIE A LDGT R  L    +  P  +ALD +   L+W D    +IE   L+   R  LE  +     G+++  + +YW D+QQ+ + + D+  +
Sbjct:  710 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFG----LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDY-----VMDILVFHS--------SRQSGWNECASSNGHCSHLCLAVPV---GGFVCGCPAHYSLNADNRTCSAP-TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGR 1175          

HSP 4 Score: 163.696 bits (413), Expect = 2.420e-42
Identity = 89/225 (39.56%), Postives = 134/225 (59.56%), Query Frame = 0
Query:  326 SKFLVFATRLDLRVVSLDVQNKVDSILPVEVYKNMKAVDYDPVDKMIYWTDDLSYGVILRTFVNGS-GVETVIPKGYTKPDHLAIDWIARNLYWTCPEYKKIYVSRLNGSSSKVIISEDLEEPRDIVVDPGDGRLYWSDWGEENPKIESANLDGTNRTTLVSQDIKWPNGVALDYKRRFLYWIDGGTSKIEYYSLTEKKRYKLEVGS-PHGFGISILGDVIYWTD 548
            +  L++A R DLR+V      K ++ + V   ++  AVD+     +IYW+D +S   I RT  N +  V+ V+  G   PD LA DW+   LYWT  E  +I VS L+GS  KV+  ++L++PR I +DP  G +YW+DWGE  PKIE A +DG++R  +++ +I WPNG+ LDY+ + LYW D   + I   +L    R  +  GS PH F +++  D++YWTD
Sbjct:   20 APLLLYANRRDLRLVDA-TNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 241          
The following BLAST results are available for this feature:
BLAST of TCONS_00028182-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP66.317e-11040.04Low-density lipoprotein receptor-related protein 6... [more]
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