TCONS_00028158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028158
Unique NameTCONS_00028158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028158 ID=TCONS_00028158|Name=TCONS_00028158|organism=Clytia hemisphaerica|type=transcript|length=1061bp
GgcaatttttcttgaaaacaagGGGTGTGTGTTGATATCCGCTAGCATAG
CTAACAAGTACATTTTAGTAAATACGAAAAGAATTGCAATCTGAAGTATA
TATTTCATTATACTAGTTTATTTGGCTTCATCTACAGTGATGACTTTGAC
ATTCACATCATAGATTCTATATAGGAAGACAGGATAAAAATGTTCATCAA
AAGCAAACAATTTCTATCCTTGAATATCTTCTTGATTATGCACATATCAT
TCATCAAATGTTACCAACAACGACACGACTCTTTCTTCCAACTGAACACA
AACACAGAGATCACCAATACTAACTACCAATCAACACTCTCCATCTCATA
TCTTCAATGTTCATTCGTGTGTCAACATCAGGACTGCACTGCAGCAAGTT
ATAATTCCAAAGATGGAGTGTGCAAAACTTTCCAACTCCCTTTAAAACAT
ATTCTAACGTCACCGAAAGAAGAAACGGATTCCTTTATCTTCCAACCATG
TGTTGAAACTCCATCTAAATGTCTACACGGAGGAGAGTGTATCCGAAATG
TGACGTCATCCACAGGATATCATTGCATCTGTGTTGAACCGTGGAGGGGT
GATAACTGCGAAAAACCTCCTCCATGTCCTTGGCCGGATTTCATCTTCAA
AAGAGAAATGTGTTATTACAAGAACTCCATCAATCAAGAAACTTTCTGGA
GTGCACAGGCGGAATGTGTCAAGAGGGGTGGTCGCTTAGCAACAGCTGCA
ACAAATGATGGTTGGCAGAGTATTCGGGAGATTGTTATTGAGGAAAATCA
GTGGTTCACCATAGGCTTGACAAGAACGGATTCTAGTGGTTGGCAATGGT
TGAGTGGTGCTCCCAACAACACCATTCCATGGAAAGCACCTTTCGAGCCG
TCCGGTGATGGAGACTGTGCATCTGTTTTTCCGGACACCTCTGGTCTCAA
CGATTTTCATTGTGATATCATAAGGAGATATATTTGTGAAAGAGATGTTA
ATCTATGATTTGAACATCTGAACATAATAACATGAAGCATTTTTGTTGAA
ATAATAAACAC
Run BLAST on NCBI

protein sequence of TCONS_00028158-protein

>TCONS_00028158-protein ID=TCONS_00028158-protein|Name=TCONS_00028158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MFIKSKQFLSLNIFLIMHISFIKCYQQRHDSFFQLNTNTEITNTNYQSTL
SISYLQCSFVCQHQDCTAASYNSKDGVCKTFQLPLKHILTSPKEETDSFI
FQPCVETPSKCLHGGECIRNVTSSTGYHCICVEPWRGDNCEKPPPCPWPD
FIFKREMCYYKNSINQETFWSAQAECVKRGGRLATAATNDGWQSIREIVI
EENQWFTIGLTRTDSSGWQWLSGAPNNTIPWKAPFEPSGDGDCASVFPDT
SGLNDFHCDIIRRYICERDVNL
Run BLAST on NCBI

transcript from alignment at sc0000667:17675..20519+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028158 ID=TCONS_00028158|Name=TCONS_00028158|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at sc0000667:17675..20519+ (Clytia hemisphaerica)
GgcaatttttcttgaaaacaagGGGTGTGTGTTGATATCCGCTAGCATAG
CTAACAAGTACATTTTAGTAAATACGAAAAGAATTGCAATCTGAAGTATA
TATTTCATTATACTAGTTTATTTGGCTTCATCTACAGTGATGACTTTGAC
ATTCACATCATAGATTCTATATAGGAAGACAGGATAAAAATGTTCATCAA
AAGCAAACAATTTCTATCCTTGAATATCTTCTTGATTATGCACATATCAT
TCATCAAATGTTACCAACAACGACACGACTCTTTCTTCCAACTGAACACA
AACACAGAGATCACCAATACTAACTACCAATCAACACTCTCCATCTCATA
TCTTCAATGTTCATTCGTGTGTCAACATCAGGACTGCACTGCAGCAAGTT
ATAATTCCAAAGATGGAGTGTGCAAAACTTTCCAACTCCCTTTAAAACAT
ATTCTAACGTCACCGAAAGAAGAAACGGATTCCTTTATCTTCCAACCATG
TGTTGAAACTCCATCTAAATGTCTACACGGAGGAGAGTGTATCCGAAATG
TGACGTCATCCACAGGATATCATTGCATCTGTGTTGAACCGTGGAGGGGT
GATAACTGCGAAAAACGTATGTGTCAAAATCTTTTCTATATCCCATATTC
ATTGCCGTGTAGCTGTAGGTAATATGTGTTGTCCTTACGCCTACTCTATA
GTTGAGCCCcccagtcacctttcaaatcacgcaaaaaaaaattcaaatca
caaaatcacgAGTTAAAATTCCTTTCTATCAAGATCACATTGATCACGTT
GGTTTCTCTGATCACGCAAACACGAAATCACTGGGGGCCTCATAGTTGAT
GAGTATTAATCGGAGAGGGAAATCAACTATCATTTTTATAACTTTGGGAA
CCACAACCTTCGGATGTTATACTTATATGCTACAATCGTTCCTTTGCAGC
TAAAAAACTTACTCGCTAACtattttgtaatgttttttatTGCACAGCTC
CTCCATGTCCTTGGCCGGATTTCATCTTCAAAAGAGAAATGTGTTATTAC
AAGAACTCCATCAATCAAGAAACTTTCTGGAGTGCACAGGCGGAATGTGT
CAAGAGGGGTGGTCGCTTAGCAACAGCTGCAACAAATGATGGTTGGCAGA
GTATTCGGGAGATTGTTATTGAGGAAAATCAGTGGTTCACCATAGGCTTG
ACAAGAACGGTATGTAATAAGTCAACGACATATGATAAACAACTAAAgtc
tatccagatataattagcagtggaaacaagaatgtctgtaacttttgata
gccaAATTCaattgtgaaaatttttttgcttgttttagagaatcaaaagc
gctatatttgaatgtatatatttttggttgaaaaattcgcgatttttagc
ggttcaatttgcgattgcaaaaattgagctttttttctacttatgctaca
acgttcatttttacaccagtggtagttcaaacttaggttaagaaggtttt
caaatttcaaggtaaacagaaaagtccttcggaagatatgggacccgaaa
taccccttggtagcacttttctgtgataTATCAAATATCCATCTTTCGAT
CATTATacattttacgatctttttaacctcatagccaaactgtgctTGAA
AACATAGCACAAAGAAGTGAACAAAGTGAATttcttttgcttgttttaga
gaatcaaaagcgctttatttgaatgtatttttggttgagaaATTGGCggt
ttttagcggttaaatttgcttGAAAACATGGCACAACAAAGTGaacgatc
ttctcctttgtctctcattatctaactttgcacgatcgCGTGATCGTATC
CCAAGAACGCTTCAAGCCAAAACCATTAATGATCTTGTTTTAATGGTAAG
CCCCCGgtggcactcatatggtccgacccatggcatgtgccgcccttacg
ggtaggtttttcgagaccctcaaaatgcactgtaagggtgtacttttgat
agaatgcactacaagggtcttcttttagtTGGATACACTGTAAAGGTGTG
TTTGTAACTGCTGAATTGGAAGTCTGACCATGGATATAtggtctgacagt
aaaaatgtaatatttttttatagttttgactcgcacccattttgatttgt
tttgtacATTGTGTCGACACCTCTTGAAACAAAGAACATAACAAGGGGAA
GATCGGTTACGTTTATAAAAGAATTCGTTTTAAATGCTTTTGGGCTTTTG
TTTCGTTTATGTTCTGAATTGTTATCGACAAAGGGACTGTCGATTCTCTC
TTACAGATGTAAACCCACCCTTCATCGTACGAGGAAAGATAATACTAAGT
GCGAACCAGGTCtgcctttttattaatttctctACGAACATTATTCTACT
GTCTCGTTTTGAATACATTCATGATAATTGAATGCCAAAGGAGCTCATCA
AAATTTGACTCGCTATTGAAAATGTGTCATTTTAAGTCTGGTGAGATATA
ATTACCTTGGTAATTGTCTGAAAAAGAAGCAGTTGTTGTTCCTGGCGTAA
TTCATGAAAGGTTCTATCATGTATTGaatattttctaaataaatacttct
ttcaTATTTCAGGATTCTAGTGGTTGGCAATGGTTGAGTGGTGCTCCCAA
CAACACCATTCCATGGAAAGCACCTTTCGAGCCGTCCGGTGATGGAGACT
GTGCATCTGTTTTTCCGGACACCTCTGGTCTCAACGATTTTCATTGTGAT
ATCATAAGGAGATATATTTGTGAAAGAGATGTTAATCTATGATTTGAACA
TCTGAACATAATAACATGAAGCATTTTTGTTGAAATAATAAACAC

Coding sequence (CDS) from alignment at sc0000667:17675..20519+

>TCONS_00028158 ID=TCONS_00028158|Name=TCONS_00028158|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at sc0000667:17675..20519+ (Clytia hemisphaerica)
ATGTTCATCAAAAGCAAACAATTTCTATCCTTGAATATCTTCTTGATTAT
GCACATATCATTCATCAAATGTTACCAACAACGACACGACTCTTTCTTCC
AACTGAACACAAACACAGAGATCACCAATACTAACTACCAATCAACACTC
TCCATCTCATATCTTCAATGTTCATTCGTGTGTCAACATCAGGACTGCAC
TGCAGCAAGTTATAATTCCAAAGATGGAGTGTGCAAAACTTTCCAACTCC
CTTTAAAACATATTCTAACGTCACCGAAAGAAGAAACGGATTCCTTTATC
TTCCAACCATGTGTTGAAACTCCATCTAAATGTCTACACGGAGGAGAGTG
TATCCGAAATGTGACGTCATCCACAGGATATCATTGCATCTGTGTTGAAC
CGTGGAGGGGTGATAACTGCGAAAAACCTCCTCCATGTCCTTGGCCGGAT
TTCATCTTCAAAAGAGAAATGTGTTATTACAAGAACTCCATCAATCAAGA
AACTTTCTGGAGTGCACAGGCGGAATGTGTCAAGAGGGGTGGTCGCTTAG
CAACAGCTGCAACAAATGATGGTTGGCAGAGTATTCGGGAGATTGTTATT
GAGGAAAATCAGTGGTTCACCATAGGCTTGACAAGAACGGATTCTAGTGG
TTGGCAATGGTTGAGTGGTGCTCCCAACAACACCATTCCATGGAAAGCAC
CTTTCGAGCCGTCCGGTGATGGAGACTGTGCATCTGTTTTTCCGGACACC
TCTGGTCTCAACGATTTTCATTGTGATATCATAAGGAGATATATTTGTGA
AAGAGATGTTAATCTATGAATGTTCATCAAAAGCAAACAATTTCTATCCT
TGAATATCTTCTTGATTATGCACATATCATTCATCAAATGTTACCAACAA
CGACACGACTCTTTCTTCCAACTGAACACAAACACAGAGATCACCAATAC
TAACTACCAATCAACACTCTCCATCTCATATCTTCAATGTTCATTCGTGT
GTCAACATCAGGACTGCACTGCAGCAAGTTATAATTCCAAAGATGGAGTG
TGCAAAACTTTCCAACTCCCTTTAAAACATATTCTAACGTCACCGAAAGA
AGAAACGGATTCCTTTATCTTCCAACCATGTGTTGAAACTCCATCTAAAT
GTCTACACGGAGGAGAGTGTATCCGAAATGTGACGTCATCCACAGGATAT
CATTGCATCTGTGTTGAACCGTGGAGGGGTGATAACTGCGAAAAACCTCC
TCCATGTCCTTGGCCGGATTTCATCTTCAAAAGAGAAATGTGTTATTACA
AGAACTCCATCAATCAAGAAACTTTCTGGAGTGCACAGGCGGAATGTGTC
AAGAGGGGTGGTCGCTTAGCAACAGCTGCAACAAATGATGGTTGGCAGAG
TATTCGGGAGATTGTTATTGAGGAAAATCAGTGGTTCACCATAGGCTTGA
CAAGAACGGATTCTAGTGGTTGGCAATGGTTGAGTGGTGCTCCCAACAAC
ACCATTCCATGGAAAGCACCTTTCGAGCCGTCCGGTGATGGAGACTGTGC
ATCTGTTTTTCCGGACACCTCTGGTCTCAACGATTTTCATTGTGATATCA
TAAGGAGATATATTTGTGAAAGAGATGTTAATCTATGAATGTTCATCAAA
AGCAAACAATTTCTATCCTTGAATATCTTCTTGATTATGCACATATCATT
CATCAAATGTTACCAACAACGACACGACTCTTTCTTCCAACTGAACACAA
ACACAGAGATCACCAATACTAACTACCAATCAACACTCTCCATCTCATAT
CTTCAATGTTCATTCGTGTGTCAACATCAGGACTGCACTGCAGCAAGTTA
TAATTCCAAAGATGGAGTGTGCAAAACTTTCCAACTCCCTTTAAAACATA
TTCTAACGTCACCGAAAGAAGAAACGGATTCCTTTATCTTCCAACCATGT
GTTGAAACTCCATCTAAATGTCTACACGGAGGAGAGTGTATCCGAAATGT
GACGTCATCCACAGGATATCATTGCATCTGTGTTGAACCGTGGAGGGGTG
ATAACTGCGAAAAACCTCCTCCATGTCCTTGGCCGGATTTCATCTTCAAA
AGAGAAATGTGTTATTACAAGAACTCCATCAATCAAGAAACTTTCTGGAG
TGCACAGGCGGAATGTGTCAAGAGGGGTGGTCGCTTAGCAACAGCTGCAA
CAAATGATGGTTGGCAGAGTATTCGGGAGATTGTTATTGAGGAAAATCAG
TGGTTCACCATAGGCTTGACAAGAACGGATTCTAGTGGTTGGCAATGGTT
GAGTGGTGCTCCCAACAACACCATTCCATGGAAAGCACCTTTCGAGCCGT
CCGGTGATGGAGACTGTGCATCTGTTTTTCCGGACACCTCTGGTCTCAAC
GATTTTCATTGTGATATCATAAGGAGATATATTTGTGAAAGAGATGTTAA
TCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015940XLOC_015940Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028158-proteinTCONS_00028158-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028158-exon-sc0000667-1491911889:17675..18290TCONS_00028158-exon-sc0000667-1491911889:17675..18290Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1510915933:17675..18290TCONS_00028158-exon-sc0000667-1510915933:17675..18290Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1575043694:17675..18290TCONS_00028158-exon-sc0000667-1575043694:17675..18290Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1491911889:18672..18883TCONS_00028158-exon-sc0000667-1491911889:18672..18883Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1510915933:18672..18883TCONS_00028158-exon-sc0000667-1510915933:18672..18883Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1575043694:18672..18883TCONS_00028158-exon-sc0000667-1575043694:18672..18883Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1491911889:20287..20519TCONS_00028158-exon-sc0000667-1491911889:20287..20519Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1510915933:20287..20519TCONS_00028158-exon-sc0000667-1510915933:20287..20519Clytia hemisphaericaexon
TCONS_00028158-exon-sc0000667-1575043694:20287..20519TCONS_00028158-exon-sc0000667-1575043694:20287..20519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000667supercontigsc0000667:17675..20519 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4518	9.38001	7.59076	9.7327	0.561546	0.488115	18.5233	21.2005	49.1606	29.5557	48.9374	51.7209	0.110775	0	0.0236449	0	0.0625188	0.640798	1.90339	1.57488	0.161042	0.117826	2.53044	1.04175	0.357661	0.0399005	0.171292	0.243744	0.138653	0.423797
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR013032EGF-like_CS
IPR003609Pan_app
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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