TCONS_00028129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028129
Unique NameTCONS_00028129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028129 ID=TCONS_00028129|Name=TCONS_00028129|organism=Clytia hemisphaerica|type=transcript|length=406bp
TCCACGTTTGACGtcacaatcaatgatgaatggAATTTACAGAGAGTTCA
ACGGAGAAACAAAGGATCTGGTTTTTGTGGCTTGACGAACATTCAATGTG
GAAAAGtgaaagcaattggtcaatGGACCAATAAGATTTGGTTTTTGTGG
CTTGATGAACATTCAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACA
CTTAAGCAAACTTCTTGAATGGgATTTGGTTTTTGTGGCTTGATGACATT
CAAAGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTT
CTTGGATGGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTTGG
ATGACCTGAAGTTAAGAACTTAAAGTTTCCATCGATTATGCTGACTGCAT
GGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000665:13955..16623+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028129 ID=TCONS_00028129|Name=TCONS_00028129|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at sc0000665:13955..16623+ (Clytia hemisphaerica)
TCCACGTTTGACGtcacaatcaatgatgaatggAATTTACAGAGAGTTCA
ACGGAGAAACAAAGGTATGATTATTTTAGCCAATCAACTGTGGGATTAGA
TTTTTCATCAACTACAATCGACGCCGAAAAAATTGGCATAAAAGGGGTAT
TACCTTAAAACTTTAAACtgtaagtgatttttaagtgctttaatGTACGG
TTAGAAAGTAGACTTTTAACCCTGAGTTTCAACACTATAGAAGCTTAGAA
TCTCACACATCTCAGGGTCTAAAAGCTCAAGAATGTTCCAATATGGCTGA
AAACATAGcatggaagccacttaaccacTCCACTggaacaaagtggaagt
actgaaattacaattctcgcccgagctttaaattctagaaaacgttaaaa
tacccaaaaattgccaatatatttcggcgctgattgtagCAAAGAAAATG
GTTTGTAGAGTATACGCAAAGATCACCGAACTCGATTTTTGATAGAAGAT
ANtccaaaattgccaatatatttcggcgctgattgtagCAAAGAAAATGG
TTTGTAGAGTATACGCAAAGATCACAGAACTCGATTTTTGATAGAAGATA
ATGTATTCATTTTTAGCTGTGTTATTTTTCGATTGTTGATTGTTTCGGCA
ATTTCACCATCAACCAAAATGTAGTTTGACCTTTTACCAAATGGTGAAGT
TTAATCGTGTATGAAATCTATTCAATATTATAAATCACAATTTTCAGGAT
CTGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAAAGtgaaagcaatt
ggtcaatGGACCAATAAGTAAGACCATATTTATCTTGGAAGACACTTAAT
TGAACTTTGATTGATATTATTTgcttattggacctacctagagatcctat
aaattaacctgtgttcgtccgttcgtctattcgttcgttcgtctgttacc
aaatTTTCTCGgaattgaatcataggaattttgTGAACCAGGCTTCTTCA
TAATCTCTCTTTTTTGTTTCGAGCGTAACACTCTTACTCTTTGGGATTTA
GAGAGTTTCGAACCTACACATTAAGCCAATCatctgtgttttaaacattc
ttttactTGACCCAGTGCTGAAGTTAAATCTTAAACGAAATCTATATAAA
TCACAATTTTCAGGATTTGGTTTTTGTGGCTTGATGAACATTCAACGTGG
AAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATG
GGTAAGACTTCATTCNCTCAACGTGGAAAAGGAAACAGTTGGTCAAGGCT
CTACACTTAAGCAAACTTCTTGAATGGGTAAGACCTTCATATTGGAAGAT
ATTTTATTGAACTTTCATTAACGTTAATTGCTTTTTCTGAACAAAACTAG
GCTACCtttgtttcgagcgtaaaactcttCCTCTTTGGGATATAGTGAGT
TTCAAACCTATGCATTAAGCCAATCatctgtgttttaaacattcttttat
ttgaccCAATGCTGAAGTTAAGTCTTAAATGAAATCTATAtaaatgacaa
ttttcaggATTTGGTTTTTGTGGCTTGATGACATTCAAAGTGGAAAAGGA
AACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGGTAAGA
CTTCATTCatcattattttttaataaaactaggctacgtcatattcCCCT
TTGTTTCGAACGTAAACTCCTACATACTCTTCAAAACTAAGGTCTAAAAA
ACTAGGAGCTGtgtattgtgtagactagaacATAACCAGGCTTAAGAAAC
AACATCGAACAAACTGGATAAACTTAACACCTCGTAAAATGTTCTCATTC
CATGCAAAAAGTAATAGTAGTTGCaaaactttttaatcaaacccatATTA
CTTACTCTTAGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTT
GGATGACCTGAAGTTAAGAACTTAAAGTAAGAACTTATTGTTATCTATTT
TCAGccgaaaatttgaccaaatctATCATATTGTTGTCAGTCGCACCTTG
GAAACAGAAGCTTTCATCTTCTCAgttggaaaaagttccaccggggcttt
gaTGTAGCTGCGTATGTTTCAAATTCGATACATGGTAATAAAAAATGCCT
ATCAGATTTTGCATAAGGTTTTTCATTCCTGTTGATTCATATAGTTTGAC
ATATTTTNCTTTTCATTCCTGTTGATTCATAtaatttgacatatttttat
aagaaactcaaTTTTAGCTTCCGTCCTGCTTTTGCTTAGCTTTCTAGCTC
TATGTTTGAAACATTTGGTGCGATCACCCCTGACATTATACCATATTAAT
GCTTATTTGGTTAGGAGCTGtcgtttgccatggttagatctaaaaaaaat
tctattacGAGATAATAAAGGCTCAAGCCTAAGCAGTctagttgcttata
agaaaagaaGTGTGCTCTTTCATGTCTTTCCCCCTTTTTAATAGAAGAGA
AAACACAATGTATCGGACAGTTTTGGACACATTTAGCAATCAAACTCGTC
TACCATTTTGTCTGTAATGataccaaaaataattttagtgtCTTTATTCA
GCTTTACTAAAACGGTATAATTGTTGTCTTATACTAGGTTTCCATCGATT
ATGCTGACTGCATGGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015915XLOC_015915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028129-exon-sc0000665-1491911889:13955..14018TCONS_00028129-exon-sc0000665-1491911889:13955..14018Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:13955..14018TCONS_00028129-exon-sc0000665-1510915933:13955..14018Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:13955..14018TCONS_00028129-exon-sc0000665-1575043694:13955..14018Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:14702..14771TCONS_00028129-exon-sc0000665-1491911889:14702..14771Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:14702..14771TCONS_00028129-exon-sc0000665-1510915933:14702..14771Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:14702..14771TCONS_00028129-exon-sc0000665-1575043694:14702..14771Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:15118..15175TCONS_00028129-exon-sc0000665-1491911889:15118..15175Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:15118..15175TCONS_00028129-exon-sc0000665-1510915933:15118..15175Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:15118..15175TCONS_00028129-exon-sc0000665-1575043694:15118..15175Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:15252..15281TCONS_00028129-exon-sc0000665-1491911889:15252..15281Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:15252..15281TCONS_00028129-exon-sc0000665-1510915933:15252..15281Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:15252..15281TCONS_00028129-exon-sc0000665-1575043694:15252..15281Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:15512..15598TCONS_00028129-exon-sc0000665-1491911889:15512..15598Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:15512..15598TCONS_00028129-exon-sc0000665-1510915933:15512..15598Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:15512..15598TCONS_00028129-exon-sc0000665-1575043694:15512..15598Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:15866..15930TCONS_00028129-exon-sc0000665-1491911889:15866..15930Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:15866..15930TCONS_00028129-exon-sc0000665-1510915933:15866..15930Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:15866..15930TCONS_00028129-exon-sc0000665-1575043694:15866..15930Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1491911889:16592..16623TCONS_00028129-exon-sc0000665-1491911889:16592..16623Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1510915933:16592..16623TCONS_00028129-exon-sc0000665-1510915933:16592..16623Clytia hemisphaericaexon
TCONS_00028129-exon-sc0000665-1575043694:16592..16623TCONS_00028129-exon-sc0000665-1575043694:16592..16623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:13955..16623 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19829	2.83632	2.20108	0	3.58584	0.89796	5.68186	6.59552	4.54906	2.24964	3.22351	1.6746	2.18606	2.09266	0.381013	0.870356	0	0.566563	0	0.200328	0	0.254791	1.10825e-08	0	6.35457	4.18114	0	1.25836	1.90804	2.31548
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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