TCONS_00028128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028128
Unique NameTCONS_00028128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028128 ID=TCONS_00028128|Name=TCONS_00028128|organism=Clytia hemisphaerica|type=transcript|length=321bp
CTTTCCACGTTTGACGtcacaatcaatgatgaatggAATTTACAGAGAGT
TCAACGGAGAAACAAAGGATCTGGTTTTTGTGGCTTGACGAACATTCAAT
GTGGAAAAGtgaaagcaattggtcaatGGACCAATAAgATTTGGTTTTTG
TGGCTTGATGACATTCAAAGTGGAAAAGGAAACAGTTGGTCAAGGCTCTA
CACTTAAGAAAACTTCTTGGATGGATTTGACAGACGTGATGAATGGTATG
CAAAGCAAATTTTGGATGACCTGAAGTTAAGAACTTAAAGTTTCCATCGA
TTATGCTGACTGCATGGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000665:13952..16623+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028128 ID=TCONS_00028128|Name=TCONS_00028128|organism=Clytia hemisphaerica|type=transcript|length=2672bp|location=Sequence derived from alignment at sc0000665:13952..16623+ (Clytia hemisphaerica)
CTTTCCACGTTTGACGtcacaatcaatgatgaatggAATTTACAGAGAGT
TCAACGGAGAAACAAAGGTATGATTATTTTAGCCAATCAACTGTGGGATT
AGATTTTTCATCAACTACAATCGACGCCGAAAAAATTGGCATAAAAGGGG
TATTACCTTAAAACTTTAAACtgtaagtgatttttaagtgctttaatGTA
CGGTTAGAAAGTAGACTTTTAACCCTGAGTTTCAACACTATAGAAGCTTA
GAATCTCACACATCTCAGGGTCTAAAAGCTCAAGAATGTTCCAATATGGC
TGAAAACATAGcatggaagccacttaaccacTCCACTggaacaaagtgga
agtactgaaattacaattctcgcccgagctttaaattctagaaaacgtta
aaatacccaaaaattgccaatatatttcggcgctgattgtagCAAAGAAA
ATGGTTTGTAGAGTATACGCAAAGATCACCGAACTCGATTTTTGATAGAA
GATANtccaaaattgccaatatatttcggcgctgattgtagCAAAGAAAA
TGGTTTGTAGAGTATACGCAAAGATCACAGAACTCGATTTTTGATAGAAG
ATAATGTATTCATTTTTAGCTGTGTTATTTTTCGATTGTTGATTGTTTCG
GCAATTTCACCATCAACCAAAATGTAGTTTGACCTTTTACCAAATGGTGA
AGTTTAATCGTGTATGAAATCTATTCAATATTATAAATCACAATTTTCAG
GATCTGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAAAGtgaaagca
attggtcaatGGACCAATAAGTAAGACCATATTTATCTTGGAAGACACTT
AATTGAACTTTGATTGATATTATTTgcttattggacctacctagagatcc
tataaattaacctgtgttcgtccgttcgtctattcgttcgttcgtctgtt
accaaatTTTCTCGgaattgaatcataggaattttgTGAACCAGGCTTCT
TCATAATCTCTCTTTTTTGTTTCGAGCGTAACACTCTTACTCTTTGGGAT
TTAGAGAGTTTCGAACCTACACATTAAGCCAATCatctgtgttttaaaca
ttcttttactTGACCCAGTGCTGAAGTTAAATCTTAAACGAAATCTATAT
AAATCACAATTTTCAGGATTTGGTTTTTGTGGCTTGATGAACATTCAACG
TGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGG
ATGGGTAAGACTTCATTCNCTCAACGTGGAAAAGGAAACAGTTGGTCAAG
GCTCTACACTTAAGCAAACTTCTTGAATGGGTAAGACCTTCATATTGGAA
GATATTTTATTGAACTTTCATTAACGTTAATTGCTTTTTCTGAACAAAAC
TAGGCTACCtttgtttcgagcgtaaaactcttCCTCTTTGGGATATAGTG
AGTTTCAAACCTATGCATTAAGCCAATCatctgtgttttaaacattcttt
tatttgaccCAATGCTGAAGTTAAGTCTTAAATGAAATCTATAtaaatga
caattttcaggATTTGGTTTTTGTGGCTTGATGACATTCAAAGTGGAAAA
GGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGGTA
AGACTTCATTCatcattattttttaataaaactaggctacgtcatattcC
CCTTTGTTTCGAACGTAAACTCCTACATACTCTTCAAAACTAAGGTCTAA
AAAACTAGGAGCTGtgtattgtgtagactagaacATAACCAGGCTTAAGA
AACAACATCGAACAAACTGGATAAACTTAACACCTCGTAAAATGTTCTCA
TTCCATGCAAAAAGTAATAGTAGTTGCaaaactttttaatcaaacccatA
TTACTTACTCTTAGATTTGACAGACGTGATGAATGGTATGCAAAGCAAAT
TTTGGATGACCTGAAGTTAAGAACTTAAAGTAAGAACTTATTGTTATCTA
TTTTCAGccgaaaatttgaccaaatctATCATATTGTTGTCAGTCGCACC
TTGGAAACAGAAGCTTTCATCTTCTCAgttggaaaaagttccaccggggc
tttgaTGTAGCTGCGTATGTTTCAAATTCGATACATGGTAATAAAAAATG
CCTATCAGATTTTGCATAAGGTTTTTCATTCCTGTTGATTCATATAGTTT
GACATATTTTNCTTTTCATTCCTGTTGATTCATAtaatttgacatatttt
tataagaaactcaaTTTTAGCTTCCGTCCTGCTTTTGCTTAGCTTTCTAG
CTCTATGTTTGAAACATTTGGTGCGATCACCCCTGACATTATACCATATT
AATGCTTATTTGGTTAGGAGCTGtcgtttgccatggttagatctaaaaaa
aattctattacGAGATAATAAAGGCTCAAGCCTAAGCAGTctagttgctt
ataagaaaagaaGTGTGCTCTTTCATGTCTTTCCCCCTTTTTAATAGAAG
AGAAAACACAATGTATCGGACAGTTTTGGACACATTTAGCAATCAAACTC
GTCTACCATTTTGTCTGTAATGataccaaaaataattttagtgtCTTTAT
TCAGCTTTACTAAAACGGTATAATTGTTGTCTTATACTAGGTTTCCATCG
ATTATGCTGACTGCATGGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015915XLOC_015915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028128-exon-sc0000665-1491911889:13952..14018TCONS_00028128-exon-sc0000665-1491911889:13952..14018Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1510915933:13952..14018TCONS_00028128-exon-sc0000665-1510915933:13952..14018Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1575043694:13952..14018TCONS_00028128-exon-sc0000665-1575043694:13952..14018Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1491911889:14702..14771TCONS_00028128-exon-sc0000665-1491911889:14702..14771Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1510915933:14702..14771TCONS_00028128-exon-sc0000665-1510915933:14702..14771Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1575043694:14702..14771TCONS_00028128-exon-sc0000665-1575043694:14702..14771Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1491911889:15512..15598TCONS_00028128-exon-sc0000665-1491911889:15512..15598Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1510915933:15512..15598TCONS_00028128-exon-sc0000665-1510915933:15512..15598Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1575043694:15512..15598TCONS_00028128-exon-sc0000665-1575043694:15512..15598Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1491911889:15866..15930TCONS_00028128-exon-sc0000665-1491911889:15866..15930Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1510915933:15866..15930TCONS_00028128-exon-sc0000665-1510915933:15866..15930Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1575043694:15866..15930TCONS_00028128-exon-sc0000665-1575043694:15866..15930Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1491911889:16592..16623TCONS_00028128-exon-sc0000665-1491911889:16592..16623Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1510915933:16592..16623TCONS_00028128-exon-sc0000665-1510915933:16592..16623Clytia hemisphaericaexon
TCONS_00028128-exon-sc0000665-1575043694:16592..16623TCONS_00028128-exon-sc0000665-1575043694:16592..16623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:13952..16623 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.43838	3.15548	0	2.13096	0.960873	1.29614	0	0	0	0	0.773878	1.30856	0.239848	0	0.328279	0	0.385084	0	0	0	0.306234	0	5.38855	4.13054	0.885954	3.97803	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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