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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028123 ID=TCONS_00028123|Name=TCONS_00028123|organism=Clytia hemisphaerica|type=transcript|length=366bp
ACGGCGATGGTGGTGACGATGGTGTATCTATCTGTACACCAGCAACATGT
TTTGTTATGACAGGAATGAGGATTGAGAGATAGTGGTTAAGACATATTGA
AAACTATGTGTCCATCCTATGGAATTCCGGCTGAATTGAGGGCAAATTAA
TGGTCTTTTCATGCTAATCACAAAGACCCAACAAAATTGaatggtttgaa
agaaatgcagtttcaacccgaccaggggaccccggaagggtctaaatatg
gagttgcggtccaggcggataacttagcaacagaaacaacattggtgatt
tggcagtttgtatctaaaagatgaagatcgtgacatgtggatcaaccaaa
ccACTTGTTTTCTATN Run BLAST on NCBI transcript from alignment at sc0000665:3201..6239+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028123 ID=TCONS_00028123|Name=TCONS_00028123|organism=Clytia hemisphaerica|type=transcript|length=3039bp|location=Sequence derived from alignment at sc0000665:3201..6239+ (Clytia hemisphaerica)
ACGGCGATGGTGGTGACGATGGTGTATCTATCTGTACACCAGCAACATGT
TTTGTTATGACAGGAATGAGGATTGAGAGATAGTGGTTAAGACATATTGA
AAACTATGTGTCCATCCTATGGAATTCCGGCTGAATTGAGGGCAAATTAA
TGGTCTTTTCATGCTAATCACAAAGACCCAACAAAATTGGTATGTAGGAA
TATTTAATATGTTTCATTAGTTTCACATCCTTTTTGAAGGTCATGCCAAG
TTTTACATGTCTTATTTTTGAACAGCTTTCGATTTCAAGGAAAGCTAGTT
TCTCACTCTAGATTGAGTCATGTTTTAGTTTTAGAGgcaagtttcttctt
tttctctcttctgtCGATCAGGAAGGGACTTATATCCATTCTCGACACCT
TGGGAACTAATTCTCAATTTCacttgagctagaatctgacaatttGCGAA
TTTCTATGTGTTACAAAAAATTTGATACAgcctgaagacttcaaaaatgg
tcaaatttcgTTGAAATATCGTACAATTGTTCCTTGGATGAACTCCTTgg
gatatttttttcattttttgaaaattttgatttttcgagCCTGGAGACTA
GACTAACTTTAGGTCAGCCTGGAGACCTCAAAAGTGGTGCGCTTGGCTGA
AATTAAGCACGCTATTCCTTGGGGCCTGGGAACTAATCTTTCGGTTTATG
CTACCATTGGTATAGGCCTACAGCtgtaaataatttgaagattctgaagt
tgaacccagtgcgttgcgcaccgGCTANGGCTGAAATTAAGCACGCTATT
CCTTGGGTGATtattctttttacaaaaaatttagatttttgggttttttt
tcctttgatgccttttttaattgaatATCAATTGTACGGggtattgattt
tgattttgactataagaagccAAAATCTATTAaattggagacatggcaat
cctgctctatttgaagaaattgaaattatgccatgatttcttcgggagaC
TGTTCTTCCTCtccgatttcttgtgtttacaatgaaatcacatccttttt
caaggccatgccaaggtttgcctaacttatttttaaattacctcaatttc
aagtatagcaaatttgttattcttgattagctttttttttctttttagaa
gctactagatacctttgtttttctcttctgtccacgagaaaatcacttaa
atacattcctaaatttcttgggaattcattttgattgtttggcatcacaa
tatcaggtggtgaattactatctcacttctttatattgtagaaggaggtg
tgtttgaagtccatagacttcttttttttacctgtttattttgatgcctt
ttttattggcattttcatttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATTTTCATTTGcccgttta
actgattttggttttcaaacatcaaaatctatcttaccagaaaaatatta
aacgatcatctggtaatcgtttgaaataattgctttatttcatattttta
cggtgccctttccgcagataattcaatttcattttgactataagaagtta
aaatctattaatttggagacatggcaatcctgctctatttgcagaaattg
aaattatgccatgatttcttcgggaaactgttcttcctctacgatttctt
gtgtttacaatgaaatcacatactttattatcgtagaattataatgcttt
tacgttaggagttcaagcagtttcctgtcgcacaatttgaactttagtgt
gatttttttcttctcattaaattgcaaaattctaattttgctcctcgatt
agacaaatttgccaaagttatctctttatgttcatctttgttttcggaga
tctttcggaatataaaagtttattgattctgtaatgttaacttctaatga
taattaaaattcaaattttttttcagaaattgactttttctatagaatgg
tttgaaagaaatgcattTTCAGCCCGCCCAGGGGGCTCCAGATGGGTCTA
AAtgtggagttgcgatccaggcggataacttagcaacagaaacaacattg
gtaaTTTgtcagtttgtatctaaaagatgaatatcgtgacatgtggaaca
accaaaacacttgttttctatggaattattggttgtatcggggacgagag
gatggtctttcatgctgatcaccaacacttatcaaagttNgtttgtatct
aaaagatgaagatcgtgacatgtggatcaaccaaaccacttgttttctat
ggaattattggttgtattggggacgagaggaaggttctttcatgctgatc
accaacacttatcaaagttgcaccatccatcaacacatttatacttcatg
gaaatttatgcagatttgatcaaataagaaggaacctaaaaatatgtgtt
tcattagtctcacttcctttttcaaggctatgccaagttttgcctaactt
atctttatattacctcaatttcaagcataacaaatttgttattcttgatt
agcttttttttctttccagaggctagatacctttgtttttccNgtcgcac
aatttgaatttttgtgtgatcttcttcttctcattaaattgcaaaattct
aattttgctcctcgattagacaaatttgtcaacgttatctcttcattttg
atctttgttttcggagatctttcggaatataaaagtttattgattctgta
atgttaacttctaatgataattaaaattcaatttttttttcagaaattga
cattttctctagaatggtttgaaagaaatgcagtttcaacccgaccaggg
gaccccggaagggtctaaatatggagttgcggtccaggcggataacttag
caacagaaacaacattggtgatttggcagtttgtatctaaaagatgaaga
tcgtgacatgtggatcaaccaaaccACTTGTTTTCTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028123-exon-sc0000665-1491911889:3201..3389 | TCONS_00028123-exon-sc0000665-1491911889:3201..3389 | Clytia hemisphaerica | exon |
| TCONS_00028123-exon-sc0000665-1510915933:3201..3389 | TCONS_00028123-exon-sc0000665-1510915933:3201..3389 | Clytia hemisphaerica | exon |
| TCONS_00028123-exon-sc0000665-1575043694:3201..3389 | TCONS_00028123-exon-sc0000665-1575043694:3201..3389 | Clytia hemisphaerica | exon |
| TCONS_00028123-exon-sc0000665-1491911889:6063..6239 | TCONS_00028123-exon-sc0000665-1491911889:6063..6239 | Clytia hemisphaerica | exon |
| TCONS_00028123-exon-sc0000665-1510915933:6063..6239 | TCONS_00028123-exon-sc0000665-1510915933:6063..6239 | Clytia hemisphaerica | exon |
| TCONS_00028123-exon-sc0000665-1575043694:6063..6239 | TCONS_00028123-exon-sc0000665-1575043694:6063..6239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000665 | supercontig | sc0000665:3201..6239 + |
Blast
The following BLAST results are available for this feature:
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