TCONS_00028101 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028101
Unique Name	TCONS_00028101
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1868

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000664:93013..98898+

transcript sequence

>TCONS_00028101 ID=TCONS_00028101|Name=TCONS_00028101|organism=Clytia hemisphaerica|type=transcript|length=1868bp
ggtcagcATTTTTTCATATCAATTTAGACCTCATTTTTTATATTGCCAAG
TCTGTCTTCAAAGTAGATCCTACTtctattttagtaaaataaagaaaaat
caaggaCTGCATTTATCCTTATCACTGCTTGAATTCactggaataaaaat
gtcagtGTTGGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCAC
CCATGGTTAGATATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTAT
GGTTGCGATATAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCA
GTCTAAGAAAGCCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGC
CATTGATTGTGCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCT
GCAGAAATGGTCAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTG
CCCACAGCGTTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGC
ACGGTGAATTAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGA
TTCGAATTCCCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAA
AACCATTGAGTTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCA
CTGTTCATGGAAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGAT
GTCATTAAATTGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGG
TGATATCAAATCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACG
TTGATGgaGTGATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTAT
GCTGGGTATGACATCACACCAATGCAGTGCGTTGAAGACTGGATGGACAT
AGCATTACGATTGGGGACGCCATTTCGAACATTTCACCACCACCTTATGT
ACATGACAGATAGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAAC
CTTTCATCAGTACctgctgttcttaattttctcGAAGTGCATTATGGTAT
CACGTAATGAAAACAGAAAGAAAGTCTAGAAGGTATATCTTTCAATGACA
TCctaatttttaatttgaagttggcattgttgtttttttgtgattttttt
cacattgtATTTTTTTCGGGCTAAATGTTAAATGAGTCTGAGAAAAACAA
TATGGTGAACATATGAAGAAATTCATTCATTGCTTACTTGGTTTGCACGC
TCAAATTTATTGGACAATACGCTGGCTTTTATTTCGCTCGTTATCTCACT
TTTGATAGGAATATTAACCTATGTGGTAATGCCCTTGATATCAATATTGC
TTGAATTTATTGGAACTTGTTCTACCTGGAGATTAGACTATTTGATTGAT
AGTTGAAATGCATTATTCAAACAGATACTTCGATCGAAATAAAGAGAATT
ATAATTTTCGTATTCTTACAATAAACTACTTTGGCTTTTGGTATGAAGAA
AATATGGACTAGACAATCGATTTGGGTGCATCTCACTAATGCGACACTTT
ATAGTCCGACAACAAAACAGTCCAAATCAAGACGGATTGAAGCAGTCCGA
CAGTACGTTGACTCAGACAAATTTTATCATGCAAATACAATCGGACGGTC
TCAAATcacgattttcattttttttaacggTAAATGCTTCTTCATATTTG
ATCCGAGGAAACAAAATTTACTTTATCTTACAGCCAAGGATGTTTTTTCT
CGAGAACACTATTATTATAGTACAATATCTTTTTTAACTTTGTACACcat
tttaatcgaactttttagattgttaagaattttatttttgaaaaaagata
ccCAGCTAAAAATTCAAC

Run BLAST on NCBI

transcript from alignment at sc0000664:93013..98898+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028101 ID=TCONS_00028101|Name=TCONS_00028101|organism=Clytia hemisphaerica|type=transcript|length=5886bp|location=Sequence derived from alignment at sc0000664:93013..98898+ (Clytia hemisphaerica)
ggtcagcATTTTTTCATATCAATTTAGACCTCATTTTTTATATTGCCAAG
TCTGTCTTCAAAGTAGATCCTACTtctattttagtaaaataaagaaaaat
caaggaCTGCATTTATCCTTATCACTGCTTGAATTCactggaataaaaat
gtcagtGTTGGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCAC
CCATGGTTAGATATTCAAAGTAGGTACATTCGAATGAGACCTTCTATTTC
AATCTAAGTGCGTGCTCATAATCAAAACGAACCTGATTTTCCCTAAATTG
GcttgcttttttaaaccaacTTCCAACTATTAGAATGTACACAGTTGACT
TAAAAATTGGGCCTAAACAGCATTTTCGTAGTCATTCCTAAATGCTAAGG
CTCGGATTGTTCTTATTTAGTTCTTAAGTTTTACCCAAAAGTGAGTCtcg
tgttttgaaaatttttgttataaaaCAGCACATGAAAGTAATTGtttttt
ctaattctttttTTCCAGACAAGCGTTCCGTCACTTAGTTCGAAGGTACG
ATCCATTCccgattttttcatttttatttattgaacaattatcaaaacaa
accctATACACTCTAGTTAGAAAGAATTGGAATTGAAAGAATTCATCAGA
TATttaaaaatcagccattttagGCTTTGAATCGTTCCTAAATTCTTCTG
TTCTTTGGGGTTTTTGAGCCAAATTGATCTTCAAATTGTTCTAAAACAAA
GGATTGtattgaaaataaggaaaatataCTGTAAGAGCGTAGTCACATAT
CTTCTGAAAATGGTTAAAACTTCATTTTGTTCCCTAACCCCGAACTCAGA
AAATTGAATCTTGTTTCTTGAAGGGAATGAGATAGCgctcagaatttttt
tttcattacagTTATGGTTGCGATATAGCCTATACACCGATGATCATTTC
AGAATCGTTTGTCCAGTCTAAGAAAGCCAGAGATGTCGAGTTCACCACTA
ATGCAGGTGTGATTGATACTGCGCTtttcctgaagaaaaaaaacgtacAT
CCCccatcaattaaaaaaattgcaaaaattaactATACTTTTTCAAATCC
TACATACAGCCGTGCCGAATTCCACATTAAGCTGCCACCAAGTTTCAGTT
ACAACTTTTATAAAGTCTAATTTGCTGCTCTCACATAATTTGAGATACCA
TTGTTTTGCATTGAGAATCTAAATGCGCAATATTTTGTCATATTTTGACA
TGAGTGAGTTTATGTTTTGGCGCTTTTGAGGACGGCAGTGTGACTGAAGC
GATTAGGAATAACCCGCTGATTTTCTGTCGTCCTCAGCtaatcaggatct
agacaagtCAGAAGCgaaccgtctccgtcgcagaaacaCACTCATACGTA
AAATCGCtaatgtttcttagtttttttatttcagaggATCGGCCATTGAT
TGTGCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAA
TGGTCAAACCgtgagtgaaaatgatagtaTAAAACAAAGCATTTGATCGA
CCTCTTAGTTGTCAGATTGGAGGTGTTCCCCAAGTGGAGGGGTTTTTTTT
GTAGAGGATTGGTTTGCATGACATCGAATATCATCAAAAGATTCTTTAAT
TTGTTGACCGCGCATGAAGCATTAGGGATAAGTCAATATTCGAAGCCGAG
CATCTAGTCTTTACAATTCAATTATAAAACATTGAAATCTACTGTATATC
TTTCTTGAAAGGAGGTGCGAGGCAAAAACTATAAGTAAAAGTGTCGCCAT
CGATGATTTCTTCCTTTCGTTTTGTTCttcgaatttttttatatttccat
CCTATTTTAATACATTTAGATACAGTGACGGTGTAGGTTTGAACTGTGGT
TGCCCACAGCGTTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGA
GCACGGTGAATTAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTG
GATTCGAATTCCCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGG
TATTTTGGTTTTTCATAAATACTTTGTATCTTTAAACTAGGATAGATTTT
TTAGGGTGCTGCTATAAGTATTACAAAACATACATAGTACTACCATTTAG
AGACTAAAATCTAATCAAGAATTTCTAAATAATAAAGAAACTCTCTAATA
AAGAAACTAAGTATTGAGAGTTTGGTctaattttcaatgaaattccctct
gaaaaaacctttttaaacaatcCGCCGATTTAAACCCCCATTAAAGTTCT
TCCTTTAAGGTCCTCACGTTATACGTGAGATGCACTTTGGTATAGATTAT
ACTAGTAAATGGTGCTAAAATTATTTTAGCTTAGTGCTAAGCTTTTGATA
GGTTGGATCTTTTATAAAAGAATTGACCCCTCCCTGTCTAACGAAAAGGG
AACCTCCTCTTTAGTTATCAAGTTTAGGGGAAACATTGATCACAATTTTG
CAATTGTGTGACGTTTATGTTAATTTATTATTCTTTACTTACAGAAAAAC
CATTGAGTTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTG
TTCATGGAAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTC
ATTAAATTGGTGAGAGATTTACCTTATCAAATCGCTATTTTATTGgctta
aattttaaaattttatttccatTCCTATTTAACTTTGGTTGTCAAATCTG
CTAACACCACAAAGTTTACCCTTTACTAGGTTTTTTAGTACGTAGTGATG
TCTTTTGCAATACAAGCAACATGTANgaaatttgtgattttttttttact
tttgaaaaaaatgttttgaatttttttgcttccggaatctttaaaaacct
aaaattttaagtgaaaaattgaaaaatatgtgctcacttagtacaccata
tcctaccaaaatcgacaattttgggcttaggcaccacccatgtNGACTGA
TCTTGTTATTTTCATAATCCCATTATCATTAGATCAAAGAATCGATCGGC
ATACCGGTGGTTGCTAATGGTGATATCAAATCTGAAGAAGATATTCTCAA
AGTCAAAGAGCTGACCAACGTTGATGGTAAGGGTAAAAGTGTTAAGTCTT
TTTGAAGGGTGGAACCCCTCGCCTCGGATTGTCTATATATATAGACCCTT
AATTATAACATTTTCTATTGTGTAACTTTTTGATGCCGTAATAACACATA
CAAACTTAAAAGCAGGATAGTCCAAAGATTCTTCATACTATGAAAGGATC
ACAAGTTAatttttactttgatttcatttcattttataaaaattcatGAA
ANTTACTAAATCATTTATAGTTATTTTAGTGATCTTTTTTATGGTCTATG
ACTTTTTGGAACTAAGGTATTAGATGACAAATTAATGAAGGACAAAATAG
TAACTAGTGTacatataatgaatgaactcTCAATAAGCACGGTAAAACCT
TTTGTTTGACAAAGAACATATCAtttccttttttgatttttattttagga
GTGATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTA
TGACATCACACCAATGCAGTGCGTTGAAGACTGGGTAAGAGAGACTGAAC
TTCAATTCAGGCCACcactattttgaccctttcaaACTAACATTCAAAGA
TCGAGCGTATTTTGAATTAACCCTTTAATTATACTTGAAGAAAGAATCCT
TCCCGTTGAAGTAACCCCCTCCCTCCCTACGAAAGTAGgcgaatgaaaaa
aaatttccctacaaactttctgaaaaagaaaagacaaatatgtttttaaa
attacaaCCAATGAAACTTGGACAAATGCCTCTCAGTTTATATTGCAGTC
TCTTGTAAGAACCCCTTTTCCTCCCCTAGCAATGCTCCTCTAAAGGTACC
GACCACGTTTGTAAATTGGAACTTTAAATACATCGCTTGTGTTTCGATAA
CATGTAAGATCATTGAGGGAGTATGAGGGCGCTCGAAAATAAACGCCGCT
GCCTGATTTTTGTCTTACGTTTGAAAGGTTCAGTAGGGCTGCCCTCCCTC
GTTTGATTTCAAGCTTTCATTTCTTTAATTCTCGGAGCCTTCAAAGAAAT
ATGTAAAGAATAGATAGCTTTTTGATAGCACATCTATCAACCCTTAATTC
CGCAGTCAGCTTCTAGGAGAACTGGTTGATGAATTGACAAGGAAATGACG
TCAGAATTTGTTGTCTTTGAGAATTTTAATGGCATGATTTCAGACATTTT
GAAGTCATGGCTTCTTGTCAACCTGGAAGCCAGTCCATGCTTTAATGGTT
GATGTGTGAATTGGTTACTTGATATTTTCAGATGGACATAGCATTACGAT
TGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGAT
AGCTGGCATACTAAATCTGGTATTAACTTTTTCGTTAATTCCGAATAGAG
CTCAAATACTTCTGTTCTAGATTGACTGTAATGCTGCTGCCGccatcata
gatttataaagcccgaagtgctagatgtcgtgctttaagccatcacaggc
aaaaaaagtgaatatcggaaaaaatattgttgctattgttgctattgttt
ttgaaaacccgtGAAGCTTcagattggtcaagcgctgaaattctattgta
atgtcacgtgacctaggtaaagtttcctacctaaccacggcacactttac
aGCAGAAATACAccatctagtccttcgggctttataaatataGGGCTGCC
ACCCGTATTTCTCATCCACCGATATGTAAAAGATCATAAAACTTTTTGTT
GTGATACCGTTTGCTCTAGCCCTATAGTAAAGCTAAAGGATTTTATGTGA
ATTTTACCCGCTACTGTCAATCTATCTAATGATGGCCTTGGATATATCCT
ACCATTTCGCCAGAGTCGGTGTTTTcgttactttttaattttatttagaa
CGTATGGTGTTCAACAACCTTTCATCAGTACctgctgttcttaattttct
cGAAGTGCATTATGGTATCACGTAATGAAAACAGAAAGAAAGTCTAGAAG
GTATATCTTTCAATGACATCctaatttttaatttgaagttggcattgttg
tttttttgtgatttttttcacattgtATTTTTTTCGGGCTAAATGTTAAA
TGAGTCTGAGAAAAACAATATGGTGAACATATGAAGAAATTCATTCATTG
CTTACTTGGTTTGCACGCTCAAATTTATTGGACAATACGCTGGCTTTTAT
TTCGCTCGTTATCTCACTTTTGATAGGAATATTAACCTATGTGGTAATGC
CCTTGATATCAATATTGCTTGAATTTATTGGAACTTGTTCTACCTGGAGA
TTAGACTATTTGATTGATAGTTGAAATGCATTATTCAAACAGATACTTCG
ATCGAAATAAAGAGAATTATAATTTTCGTATTCTTACAATAAACTACTTT
GGCTTTTGGTATGAAGAAAATATGGACTAGACAATCGATTTGGGTGCATC
TCACTAATGCGACACTTTATAGTCCGACAACAAAACAGTCCAAATCAAGA
CGGATTGAAGCAGTCCGACAGTACGTTGACTCAGACAAATTTTATCATGC
AAATACAATCGGACGGTCTCAAATcacgattttcattttttttaacggTA
AATGCTTCTTCATATTTGATCCGAGGAAACAAAATTTACTTTATCTTACA
GCCAAGGATGTTTTTTCTCGAGAACACTATTATTATAGTACAATATCTTT
TTTAACTTTGTACACcattttaatcgaactttttagattgttaagaattt
tatttttgaaaaaagataccCAGCTAAAAATTCAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015899	XLOC_015899	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000664	supercontig	sc0000664:93013..98898 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.887	1.0739	2.51203	3.26632	13.0058	7.36348	10.2191	10.9542	2.81394	3.14723	2.73438	2.22046	1.18789	2.35703	0.988947	1.91378	2.70252	2.32132	0	0.158789	3.42714	2.94363	5.71621	7.64365	2.10242	2.83883	1.70415	1.12527	4.28973	3.44335

Blast

[Close]

BLAST of TCONS_00028101 vs. Swiss-Prot (Human)
Match: DUS4L (tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.774e-123
Identity = 170/303 (56.11%), Postives = 225/303 (74.26%), Query Frame = 2

Query:  146 KMSVLDLFEEKDVVKVCAPMVRYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLIVQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGELVKDIVLQTKQRVGFE-FPCEVKIRIHKDSRKTIEFCQRAERAGADWITVHGRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDGVMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMTDSWHTKSERMVFNNLSSVPAVLNFLEVHYGI 1051
            K   +++F    +VKVCAPMVRYSK AFR LVR Y CD+ YTPMI++  FV+S KARD EFTTN  D PLIVQFAA+  +  +DAA +V PY++G+ +NCGCPQRWAMAEGYG+ L+   ELV+D+V Q + +V    F   +KIRIH D ++T++ CQ+AE  G  WITVHGRT +ER +PVHYD IK+IKE++ IPV+ANGDI+S ++   V  +T  DGVM A+G+L NPAM+AGY+ TP++C+ DW+DIAL LGTP+  FH HLMYM +   ++ E+ VFN LSS  A++++L  HYGI
Sbjct:   15 KKDPIEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAIIDYLTDHYGI 317

The following BLAST results are available for this feature:

BLAST of TCONS_00028101 vs. Swiss-Prot (Human)

BLAST of TCONS_00028101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DUS4L	2.774e-123	56.11	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-li...	[more]

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TCONS_00028101 (transcript) - C. hemisphaerica