TCONS_00027948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027948
Unique NameTCONS_00027948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027948 ID=TCONS_00027948|Name=TCONS_00027948|organism=Clytia hemisphaerica|type=transcript|length=883bp
CAGAGAGAAAACAATCAGTGCTAGTGAATGGTGTCACTTCTGAATCACAA
CAGGTCATTTCAGGAGTCCCTCAAGGTAGTGTTTTGGGACCTTTGatttt
cctcattttgattGGGGATATTGACAATATATAAATGGACGGATGACAAC
aatcgcttcttttttaaagattcgccgggttggaaaagtatatgaatttc
tttgtacatattttacctaccccaaatatttaggaggctgagttttgaAC
GAATcctcaagttgaaacgaacgataaatgtatcaaggtctgttttattt
accccctggtgacttaacaaaagagacttaactcaatgttacaatccaat
tattgaaagtttgtctcagcctttttataatgagcgagacgtgcgttctc
tgattacgcaattttcatattgacattttcgaggcattttgatgtaactg
ttagTATAGCAACATTAGTTACCAAGGATTGGAGTGATCTTCATTCCAAA
CTTAAAATCAATGATCTAAAAATGATTTCCAAACCTACTTTAAAATCCCA
CCTTCATCGTTATCTCTTCGTAAACTTGCAGAACAATAAAACATagcttt
ttttcttccttttttcttcttctctctCCTTCTCTTCTTCTCTCGCACCT
CGTCAGAGGCAGGAACGGGTACTTAACAATTCCAGCTACCTTAGTGCCCC
CCCAGGCCCCCCACACTTGTGAAGACTAAACCTTAGGTTACTTCGGGTAC
ACTAGTCCCCCAGACTATTCTTTGTGTATTTCCCTTCCGTTTACTCACTC
ACAGAAACATACAAAGACTACAAAGattgcttttcttttcatcaaacatt
tttattcatAGTATAacagaccttttttcaaag
Run BLAST on NCBI

transcript from alignment at sc0000658:9977..10859

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027948 ID=TCONS_00027948|Name=TCONS_00027948|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0000658:9977..10859 (Clytia hemisphaerica)
ctttgaaaaaaggtctgtTATACTatgaataaaaatgtttgatgaaaaga
aaagcaatCTTTGTAGTCTTTGTATGTTTCTGTGAGTGAGTAAACGGAAG
GGAAATACACAAAGAATAGTCTGGGGGACTAGTGTACCCGAAGTAACCTA
AGGTTTAGTCTTCACAAGTGTGGGGGGCCTGGGGGGGCACTAAGGTAGCT
GGAATTGTTAAGTACCCGTTCCTGCCTCTGACGAGGTGCGAGAGAAGAAG
AGAAGGagagagaagaagaaaaaaggaagaaaaaaagctATGTTTTATTG
TTCTGCAAGTTTACGAAGAGATAACGATGAAGGTGGGATTTTAAAGTAGG
TTTGGAAATCATTTTTAGATCATTGATTTTAAGTTTGGAATGAAGATCAC
TCCAATCCTTGGTAACTAATGTTGCTATActaacagttacatcaaaatgc
ctcgaaaatgtcaatatgaaaattgcgtaatcagagaacgcacgtctcgc
tcattataaaaaggctgagacaaactttcaataattggattgtaacattg
agttaagtctcttttgttaagtcaccagggggtaaataaaacagaccttg
atacatttatcgttcgtttcaacttgaggATTCGTtcaaaactcagcctc
ctaaatatttggggtaggtaaaatatgtacaaagaaattcatatactttt
ccaacccggcgaatctttaaaaaagaagcgattGTTGTCATCCGTCCATT
TATATATTGTCAATATCCCCaatcaaaatgaggaaaatCAAAGGTCCCAA
AACACTACCTTGAGGGACTCCTGAAATGACCTGTTGTGATTCAGAAGTGA
CACCATTCACTAGCACTGATTGTTTTCTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015807XLOC_015807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027948-exon-sc0000658-1491911889:9977..10859TCONS_00027948-exon-sc0000658-1491911889:9977..10859Clytia hemisphaericaexon
TCONS_00027948-exon-sc0000658-1510915933:9977..10859TCONS_00027948-exon-sc0000658-1510915933:9977..10859Clytia hemisphaericaexon
TCONS_00027948-exon-sc0000658-1575043694:9977..10859TCONS_00027948-exon-sc0000658-1575043694:9977..10859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:9977..10859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5183	3.72961	9.46275	9.82401	5.0947	4.70366	3.97406	4.84809	2.39722	2.13871	3.67784	2.9572	2.02468	2.54711	1.80233	1.89672	1.95843	1.64035	1.95637	1.96317	4.92221	5.56071	1.88973	2.42471	1.60926	2.74694	10.1375	5.2522	4.26907	3.10833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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