TCONS_00027946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027946
Unique NameTCONS_00027946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027946 ID=TCONS_00027946|Name=TCONS_00027946|organism=Clytia hemisphaerica|type=transcript|length=292bp
AAANaaaacaaaaatcaaaaatcaaaatgtctacAGATGCagataaaaat
gttaaaaggCAGAGAGCAGGGTTCATGAACTACATGGACAAATTGTTCAA
TGGTGAAATAAAAAGGATCATTTCACTGGAAGAAGTTGACCAAAATAGCT
TGgattatttaaaaacaataaatgaAACTTTGAGTGTGAAGTTAGAGAAA
GAGTTTTGGAAATCGATCAACATCTAGCTGATCAATGTGAGGAAGATGAA
GACTACACCAAAGCAATTGAGCAAAGTATGGAATACGAGGTA
Run BLAST on NCBI

transcript from alignment at sc0000658:1..292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027946 ID=TCONS_00027946|Name=TCONS_00027946|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000658:1..292 (Clytia hemisphaerica)
TACCTCGTATTCCATACTTTGCTCAATTGCTTTGGTGTAGTCTTCATCTT
CCTCACATTGATCAGCTAGATGTTGATCGATTTCCAAAACTCTTTCTCTA
ACTTCACACTCAAAGTTtcatttattgtttttaaataatcCAAGCTATTT
TGGTCAACTTCTTCCAGTGAAATGATCCTTTTTATTTCACCATTGAACAA
TTTGTCCATGTAGTTCATGAACCCTGCTCTCTGccttttaacatttttat
ctGCATCTgtagacattttgatttttgatttttgttttNTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015805XLOC_015805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027946-exon-sc0000658-1491911889:1..292TCONS_00027946-exon-sc0000658-1491911889:1..292Clytia hemisphaericaexon
TCONS_00027946-exon-sc0000658-1510915933:1..292TCONS_00027946-exon-sc0000658-1510915933:1..292Clytia hemisphaericaexon
TCONS_00027946-exon-sc0000658-1575043694:1..292TCONS_00027946-exon-sc0000658-1575043694:1..292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:1..292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.09282	2.68523	1.35044	0	3.44722	0	2.19096	2.56394	0	4.07601	1.22709	1.39548	1.18964	3.7226	3.42554	11.1615	0	5.57041	0	1.21128	6.63833	3.67731	2.07935	3.72475	1.5984	1.63294	0.197095	0.623456	2.06809	1.36395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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