TCONS_00027931 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027931
Unique Name	TCONS_00027931
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1085

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000657:71139..76705-

transcript sequence

>TCONS_00027931 ID=TCONS_00027931|Name=TCONS_00027931|organism=Clytia hemisphaerica|type=transcript|length=1085bp
CNGCCCTCGCTGCAAAGTTGCGCGTCAAGGGTACCAACAAAGTGGCTATT
AAGATAATGCCCAAACGAAACGAAGCCGAGATTTCAAACGAATTCAAGGC
AATGAGAAGAGCTAAAGGCTCTGCAAATATTGTCGAAATTTACGGCAAAT
TCAATGGTATCGAAAATACCTATCTTATCATGGAATTCTGTCATGGTGGC
GATTTGACCAATCATTTGGAAACCGTTTACAAAGATTCTCCATATCTTAG
TGAATCCAAAGCTAAAGAATACTTCAGGAGTATTGCAACAGGAGTCAAAT
ATTGCCATGATCATGGCATCGCTCATCGCGATCTCAAATTTGAGAACGTC
TTAGTTGACCGATATGGAGTTGTAAAGCTTGCAgATTTCGGATCGGCCGA
ATTTCCCGATCACTATCCCGATGGTCTCCTAGACACATTTATCGGCACAC
CTTCGTACATGGCCCCCGAAGTCGTACTCGGCTACCTCGATAAAGGCCAA
GCGTATGATGGTTACAAGGCAGATAGCTGGAGTGTTGGAATCATCCTGTT
CAAATTGTTGACAGGCAAACAACCCTACGCACCGTTGCCATGGCAACTAC
TCTACAATTTGATTCAAAAGAAGACTTTCAAACAACGTCTTCCAGCGGAT
GTAAACCTAACCCCAGAATGTATCAACCTTCTTGGAAGACTTTTAGACAG
AGATGCGAAAAGCAGAGCATCACTTCAAGAAATATTGGAACATCCGTGGT
TGAAGTTGGAAGAGGTAAAGAAGgtcgatgagaaaaagaaaaatgttcca
gTAAAGTTGATGGATGAAAAAAGGCCCTTGCAGGTCCAAAAGCAATCGCA
AGACGTTCGGGCAAAAAACGGAAATAACGCATTAAATACTCTAATTGTCG
TCAAAGGAAAAATCGTCCACAGAGATGAGAGAAAACCATTCAGACGAGCA
TTCTATCCTAATGGCCATCATTTCACTCCACAAGAATGGTGGGAATGACT
CATCATAACCACACCGTCAACAGCAACAATAAAACCCACAATGCAACAAA
ATCCACATAACTCCAAATCAATCTATCAATCCCtc

Run BLAST on NCBI

transcript from alignment at sc0000657:71139..76705-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027931 ID=TCONS_00027931|Name=TCONS_00027931|organism=Clytia hemisphaerica|type=transcript|length=5567bp|location=Sequence derived from alignment at sc0000657:71139..76705- (Clytia hemisphaerica)
CNGCCCTCGCTGCAAAGTTGCGCGTCAAGGGTACCAACAAAGTAAGTTTA
AATCTTTTCATACAGTTTTTCTAATAAATGATTTTGCGTTACTTGCAGAA
TTAAATTCTTACCAAGTAAGAATTTTTTAAGATTTTTACTCCTCTTAAAA
ATATTTTTATTGACTATTTATTATTTTACAGATTATTTATTTGTGCTGTA
ATTAGAAAAAAACATCATTAGCGTGAGGATCTTTAGTTTCTATGGATAAC
TTACTTCGTCTTTTTTTAAGGTGGCTATTAAGATAATGCCCAAACGAAAC
GAAGCCGAGATTTCAAACGAATTCAAGGCAATGAGAAGAGCTAAAGGCTC
TGCAAATATTGTAAGTATAGCCTTTATATTACATATTATCATTTTTTTAT
GTTTTGAAGGTTAAGCTTCAGTACGTTTATCATAATGTTTCTGTAGTGGA
AACCACAATCATACACTAAATATTTGAGATAAAGGGGAGTTCCCGGTGTA
ATTTTGAACACCACGATTGATTTTTAAGCGCATTAGTTTTAACTCTGAGT
TTTAACATGAGACTTAAGACTTACGACCTTAGGATCTCAGGATTTAAAAG
CTCAAATTTGCTCGAATGAGGCTTGGAATATAGCCTAGAAGCCACCAAAC
CCCTCTAAAATCGAAATATTCAATGGAAGAAAGTGGAAGTGCTAAAATAG
CAATTCTCGCCCGAACTTTAATTTCTGAAAAACGTTAAAATACACTAAAA
TCTCAATATATTTCGAGGGTGATTGCAGGTTGGGGTTTACTTATGCAACG
GATATACACGTTTTTTTATAAGAACAAACTATATAAGAACGGCTTCGATG
GCCAAATTATTAAGAAAAAGTTAAAAACATTTTAAGGCTTCGTGGGCTCG
CTCTAAAAAGCTTGATTTCTTAGGAAATTGCACAAAAATACTCACAAAAT
GGTGAAGCTAAGAACATCCTGAGAACATTTTTAGGCTCAAAACTCAAAAA
GTTAGGAGAATCCTTAGGCTTCAAAAATTTTGGATATTCTTATAAAAAAA
CGTGTACCTTTTTCACCACCATGAGTTCAAAATAACCAAAATAAAAATAG
CTCTCTTTTTTGGAAATTTGGGAAGATGGCAATTTCTTTGAGATTAGTTA
TATAATGAAATTAATCCCCATTCGCAAATTTATGTGCCGAGTAGAGTCCA
TTTTTCGAAGCTCAGCAGGACCCTGTCGATCAGCAAGGAGAGTAACTCCC
ATCATCATGGCGTTCTTATTTTACAAGCCTAGTGAAATTTAAGCTACTGC
ACACGTGCTAGGCCTGGATAAATAAATAGGTTACCCTGGAAGCTGAGTCG
AGCCTTTTTCATTAATGATAAATCTATACTTTTATACATAGGTCGAAATT
TACGGCAAATTCAATGGTATCGAAAATACCTATCTTATCATGGAATTCTG
TCATGGTGGCGATTTGACCAATCATTTGGAAACCGTTTACAAAGATTCTC
CATATCTTAGTGAATCCAAAGCTAAAGAATACTTCAGGAGTATTGCAACA
GGAGTCAAATATTGCCATGATCATGGCATCGCTCATCGGTGAGTTACTTT
ATAGTTAGCAGAGTTCATCAAATAACTTCCGTCAGTACAAAAATTCAGCT
GTACTCGCTCAAAAGTATTTTGTATTTTTTACGTAGTATAAGTGATTTAA
ACATAAAACGAATTCGCGCAGTAGTTACACCAATCGGTCCTATTAAAATA
CTTTATCCAATGGTATTTTGACTTACCTTGTCTATCCAGACAATTGTGAG
TTATAGGTATAGTTATATGAAATATGTTCTAAGACTTCAAACAGCACAAG
CCTACGATTACAGTAATTTTAAATATCATTTTCTTTCCCGATTCTATTTT
AGCGATCTCAAATTTGAGAACGTCTTAGTTGACCGATATGGAGTTGTAAA
GCTTGCAGGTAAAATTCTTTTAAAACTTCGTTCTTTTCGAAATTTTGGTT
ATCTATCGATCCNCTTGCAGGTAAAAATCTTTAAAAACTTAACTACATTC
TGTTCGAAATTTTGGTTATCTATCGATCCATCGAATGAGCTATTCCATAT
TAAAAACACCTCCGTATGTTAAGAATTTCAAGCTTTCACAGAATTTTTGG
CTTTTCCACGAATGAAAAATATGATCTGAAGGGTTAATTTTTTTCTGGAA
TGGCCAATTACGTCGTTTACACAATTTTCACCACAAGCATTCACATATTC
CGTTTCTATACGTTTTAGATTTCGGATCGGCCGAATTTCCCGATCACTAT
CCCGATGGTCTCCTAGACACATTTATCGGCACACCTTCGTACATGGCCCC
CGAAGTCGTACTCGGCTACCTCGATAAAGGCCAAGCGTATGATGGTTACA
AGGCAGATAGCTGGAGTGTGTAAGTTGTCCAAAGTTCGTCTTTTCATAAG
TACGCTAAGTTTATGCAAGTAAAACACTTATCATAGCACTCATTCTGAAA
AATAAAATGAGATTTTGTCTAGTATACCGACCGACTGCCTAACGATCTGC
CCGTAGAACAACAAATTAAATTTGTCTCGCCTAAAAGAGGATTTCAATAT
TGAAAATCCTGGAATACATATTACAAACTATTTTAAATTACACTATTGAT
ATTACTGGACTTTCATATTCGATTTTGCTAAGCTTGTAGGTTTAGAACGC
CATGATTCTGGGAGAAACTCTCCTTGTTGACCGACAGGGTCCTGCTATCT
TATGGATGTTACTATATTGCATGGTATTATTTTTCTCCTTCCAGTGGAAT
CATCCTGTTCAAATTGTTGACAGGCAAACAACCCTACGCACCGTTGCCAT
GGCAACTACTCTACAATTTGATTCAAAAGAAGACTTTCAAACAACGTCTT
CCAGCGGATGTAAACCTAACCCCAGGTAATTTGCGATTCGATTTTAGTAG
AGGCAGATCAGCTTATAAAATTTAAATATCCTGCCCTGGATTTGCGTCTG
CATTTAACCGATCGGAATCACCTGAAAAGGCCGGTAATTTGACCACTGTT
ATGCTATTTTAGTCAAATTCAAACTTTTTTCGAGTATTGCCGATAGAAAA
AAAGAAGTAATTTTTATGAAAAAACCTAAATTTTCCTCTTCGTCGGTAAA
ATCGCTTACATTTCCTAATTCGCCGTACCAGAATTAAAAAGCTTCCGTCG
TGCCTGCGTATAAACAAGAAAAGACAGCTCAAAGATTTCTTCTCAATAGA
CGATAAGATTGACAAAGACTTTCAATCCAAGAGCAAATAATTTCTGGAAG
TTCCCATTGTCTTTAAAAAATCTTCTTTTTTTTATGACTTTTTTTTTCTC
AATTTTATTCACCGGCTAGTTGGTTGTCTGTACACAGACCCGATAACTAC
GGCTAATTTCAAAATTCATTGTCTTAGAGACGATAAACGTGAGATACACT
CTGGTACAGAGTAGCTAGTTGGGAAGACATATCTAAATAACCATTATATT
CTCTTACCTCTTGAATAGAATGTATCAACCTTCTTGGAAGACTTTTAGAC
AGAGATGCGAAAAGCAGAGCATCACTTCAAGAAATATTGGAACATCCGTG
GTTGAAGTTGGAAGAGGTAAAGAAGGTAATCTATGGGGGCGTACGGGCTT
TGCGATTTCCGAAATACCGAATAATTTAGCCAAAATTTCCGAAATTTCAT
AAAAAAATACTTGCAATTCCGATATACCGATTTGTTGGGTATTTTTCCTC
GTTTTGACTAATTTTCCATCAAATTTGATTTTTCATGTATGAATTCAGAA
AAAGGGTGACAAAAACTTTATAATACCGAAATTTAGAAGCAAAAATTCAT
GGATTTCTGATACCGAAACAATTTAAGAATTCCAAAATACCGAAAGAATT
TTCTCCGATTTCCGACATTCTGAAGAAAAAAGGTTCGATTTCCGCAATTC
CGAAATACCGTACGCCCCCACATCTATAAACTCTGATTTTCTAGTGATAC
CTTGAAAAAATGTTCTCGTTAGTTTTCAAAAGCCGAGATGTTGAGATGTT
CAATTAATTACTACAGTTAGGTATCTTATTTTCCACTTAAGTACGAAAAC
AATTAATGAGCCTTGTAAGGAATCACTGTTTCAATTGCCGTAACTACTAC
CAAAATACTACTTTTTACTCAACACTGTAGAAGAGAATTTTACAGGTGAA
AACTCTCAAAGAATCTGATTATCCCTTTACATTTTTTTTATTAGAACAAA
CATTATAAGAACATAAGACTTCGATGGCCAAAATGTTAAGTACAAGTTAA
GAACATTTTAAGGCTTCGTTGACTCTAAAANGAACAAACATTATAAGAAC
ATAAGACTTCGATGGCCAAAATGTTAAGAACAAGTTAAGAACATTTTAAG
GCTTCGTGGACTCTAAAAAACTAAATTTCTTAGGAGAATGGACAAAAATA
CTAAAAAATAGCGAAAATAAGAACATGATAAGAACGTTTTTAGGCTTAAA
ACTCAGCCTCACTTACAAGGATTTTATTGTTTTGTTTTTCATACCTCACA
ATTTTTACACAACTTCAAATTAGAAAAAACTTCATTTTTTAGGTCGATGA
GAAAAAGAAAAATGTTCCAGTAAAGTTGATGGATGAAAAAAGGCCCTTGC
AGGTAAGTAAAGTTAACTTTTATTCATTTTTTACACATTTTTTTTTACAC
ATTTTACCCCAATTTTCGACTCAAGGCTGGACTTGCCAAGGATTTATATT
CGCCACAAAAAAACCTCGCCTCACTTTGCCTATTATTATTTGTTAAAGTG
CTTGAATTTACTTTTACATTTCAGGTCCAAAAGCAATCGCAAGACGTTCG
GGCAAAAAACGGAAATAACGCATTAAATACTCTAATTGTCGTCAAAGGAA
AAATGTAAGAAGGAACATATTTATTTGGACTCCGATTCTGCACTAGATAT
TTTTTTCCCAGGAAAATCACGTGATATACTTTTAACCAATAAAATTTGAT
AATTTCGAGAGGAAAGTGAACACTAAAACACTTTCAAAACCAATGAGATA
TATAGGGCTAAAAAGGAATTCTCGACCACTCCTAGGCAAGGGGAAGTCAA
TAATATTTGCGCTGAAGTTCGGATAACAGATTGATTCTAAGTTTTTCTTT
GTTTTTCTTGCGTGGCATGTTTTTAAAAATTTGTTGGTAATGTTACTTTT
TATCTACAGTGGAATTCGTGTGAAAACCACGCGGGCCAAGAAAACTTATG
TTTGAAGCCTACATAGGATATTCGGTTCCAGCTCTCGGCTATATTAATAC
AGGTGGTTCTGAAATAGCATGAAAGCAATTTAAGGATTATTGACATACTA
GATGAGGCAATTAAATGAAACTCGTTCTTTTCATTCTCATTTTAGCGTCC
ACAGAGATGAGAGAAAACCATTCAGACGAGCATTCTATCCTAATGGCCAT
CATTTCACTCCACAAGAATGGTGGGAATGACTCATCATAACCACACCGTC
AACAGCAACAATAAAACCCACAATGCAACAAAATCCACATAACTCCAAAT
CAATCTATCAATCCCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015793	XLOC_015793	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000657	supercontig	sc0000657:71139..76705 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0225007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00806756	0	0	0	0

Blast

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BLAST of TCONS_00027931 vs. Swiss-Prot (Human)
Match: MELK (Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.062e-34
Identity = 84/241 (34.85%), Postives = 130/241 (53.94%), Query Frame = 3

Query:   42 VAIKIMPKR----NEAEISNEFKAMRRAKGSANIVEIYGKFNGIENTYLIMEFCHGGDLTNHLETVYKDSPYLSESKAKEYFRSIATGVKYCHDHGIAHRDLKFENVLVDRYGVVKLADFGSAEFPDHYPDGLLDTFIGTPSYMAPEVVLGYLDKGQAYDGYKADSWSVGIILFKLLTGKQPYAPLPWQLLYNLIQKKTFKQRLPADVNLTPECINLLGRLLDRDAKSRASLQEILEHPWL 752
            VAIKIM K     +   I  E +A++  +   +I ++Y         ++++E+C GG+L +++  + +D   LSE + +  FR I + V Y H  G AHRDLK EN+L D Y  +KL DFG    P    D  L T  G+ +Y APE++     +G++Y G +AD WS+GI+L+ L+ G  P+       LY    KK  + +      L+P  I LL ++L  D K R S++ +L HPW+
Sbjct:   37 VAIKIMDKNTLGSDLPRIKTEIEALKNLR-HQHICQLYHVLETANKIFMVLEYCPGGELFDYI--ISQDR--LSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELI-----QGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALY----KKIMRGKYDVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNHPWI 263

The following BLAST results are available for this feature:

BLAST of TCONS_00027931 vs. Swiss-Prot (Human)

BLAST of TCONS_00027931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MELK	1.062e-34	34.85	Maternal embryonic leucine zipper kinase OS=Homo s...	[more]

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TCONS_00027931 (transcript) - C. hemisphaerica