TCONS_00027905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027905
Unique NameTCONS_00027905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027905 ID=TCONS_00027905|Name=TCONS_00027905|organism=Clytia hemisphaerica|type=transcript|length=465bp
GATgagaacacaagttatttgtgatcaCGGCCAGTCGTGACCTAAATatg
aggaaaataaaaattgaagtcAGTTTACTGGtcctattgtttttgaaaat
tgacaTGGTACCTTTTAGCTGCCAAAACGTTTGATTTTATCTTGCAAGTT
ACAAAAACTTTGAAGGGAACTAAAACTCTGCCAATTTTGCAATAAAACTT
ATTCAAACTGCAAAGCTTACTAAATGACCAGACATCTTGCCCTTCGGCTC
TCTTATCAGACTGCAAAGGATTAATCAATACCCTACGATCAGAACATGGA
AGCATGTTTTAAGTGATCCCTCAAAATTAACTGACGCCACGTCTAGGAAA
ATGTGTCCCTccattaaagaaaatattttaagacaaaaattttcattata
cTTTGGGCATTTGATATTTGATTTGGTGAAAAACTTTGCGAATCAGCaac
gaaatatttttgaag
Run BLAST on NCBI

transcript from alignment at sc0000653:70493..70957

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027905 ID=TCONS_00027905|Name=TCONS_00027905|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000653:70493..70957 (Clytia hemisphaerica)
cttcaaaaatatttcgttGCTGATTCGCAAAGTTTTTCACCAAATCAAAT
ATCAAATGCCCAAAgtataatgaaaatttttgtcttaaaatattttcttt
aatggAGGGACACATTTTCCTAGACGTGGCGTCAGTTAATTTTGAGGGAT
CACTTAAAACATGCTTCCATGTTCTGATCGTAGGGTATTGATTAATCCTT
TGCAGTCTGATAAGAGAGCCGAAGGGCAAGATGTCTGGTCATTTAGTAAG
CTTTGCAGTTTGAATAAGTTTTATTGCAAAATTGGCAGAGTTTTAGTTCC
CTTCAAAGTTTTTGTAACTTGCAAGATAAAATCAAACGTTTTGGCAGCTA
AAAGGTACCAtgtcaattttcaaaaacaataggaCCAGTAAACTgacttc
aatttttattttcctcatATTTAGGTCACGACTGGCCGtgatcacaaata
acttgtgttctcATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015774XLOC_015774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027905-exon-sc0000653-1491911889:70493..70957TCONS_00027905-exon-sc0000653-1491911889:70493..70957Clytia hemisphaericaexon
TCONS_00027905-exon-sc0000653-1510915933:70493..70957TCONS_00027905-exon-sc0000653-1510915933:70493..70957Clytia hemisphaericaexon
TCONS_00027905-exon-sc0000653-1575043694:70493..70957TCONS_00027905-exon-sc0000653-1575043694:70493..70957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:70493..70957 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.135142	0.941478	0.460544	0	0	0	0.333606	0.934263	0.144654	1.12324	1.93823	0.460842	0.0957179	0.472159	0.1689	0.20807	0.106633	0.736594	0.616634	0.401975	1.17642	0	0	0.148793	0.398381	0.380055	0.202802	0.307637	0.313433
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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