TCONS_00027876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027876
Unique NameTCONS_00027876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027876 ID=TCONS_00027876|Name=TCONS_00027876|organism=Clytia hemisphaerica|type=transcript|length=4265bp
aaaaattttcatctcGTTTAGTAAATACAGAAAAAACttctttatcaaaa
tatttcttgtactgAGGAAAGTGAATCATGATAATTGAAAGTGTGGATTC
ATTGAAAACATGGCTCGTCAAAGAATTGGAACCAATTTGTGATGCTGACC
CTGCAGCATTGGCAAAATATGTTATTGCTTTGGTAAAAAAGGAGAAGTCA
GAAGCTGACCTCAAAGCTCTGTGTGAAGATCAGCTTGATGTATTCCTTGG
AGAAGAAACCAGACAATTTGTTGGTAATCTATTTAAGGCACTGGGAGATA
ACTCCTATCTCCCTCCTGCACCACTGCTCACCCAACCCACTGTTGAGGAG
CCCATCAAAGAGGTGGAACAGAAAGGTACCAAGCGCAAATCTTTTGAAGA
AACACCAAAAGATGACTTTGAGAAACTTGCTAAAACTGAAAAGAACACTG
ATGTTGGTAAAGTTGTCAGTGATAAAGAAAACATAGACAATGTAGATAAC
AGTAACAACGACGGAAGTAAAAACGAAAATAATATTTCGGAAGGGAATGC
AACAGAAAATAATAGACTTCAAGTTGAGAGAAGTGATGATGTGCGCATGC
GTAGTGTATCTAAAGATCGCTCAATGAAGAGTATGTCACCAAGAGCTCGA
CATCGAACTCGTCGCTCGTCACGATCACCCAACAGGAGCAGCCGACATTC
TAGACACATGCCAAGTGGTAGTGGTAGTAGTAGGAGCACACGTAGTGACA
AATCACGAGATTCGCGAAGCAACAGAGATAATGGTAGAAGAACCAAATCA
AGCCGAAGAGAGGCAACTAGAGAAAGATGCAGAGACTACGAAGAGAAGGG
ATATTGTATGCTTGGCGAGACATGCCGTTTTGATCATGGACGCGATCCTG
TGGAGGTGGACGATCGCAATCTTCCACATATGCTTTCCCTAGCCACTGCA
AATACCTTCCCTCCTTCCTCTCAACCCAACAACGCAGCTACCATGGCAAA
CCCATCTGTCCCAGTCTTCCAAAATGTCATTGGTCAACGCCCAATGGTGC
CACCTATAGGAACGGCCAATCTCAACACCTCTCTGACAACAGTGCAAGTT
CAAAACACGCGACCCTCGCCCGTTGAGATTAACACGCAAGTCCCTATCTT
TCGACCACGCAACCCAATGGCTTTGTTCAGAAATATTTCTCCAACAGGTG
TTCCACCAGCGATTCCAGGTCAACCAACACCACCACAAGCGGCTATTCCA
CACCAACAACCACCCATCAGTGAAACGTACAACCCTGAACAACCTTCTAT
TCTTGAAACGGATGAAGTGCTGAAAGAAACCAAGATCTCTGTTGACAAAG
TGAAAGAAGACGCAGATCGTTCACAAGACGAGCTCGTCCAAATCGCGATG
GGAAACGTCCCGCTCACACCTATCCTCGGCCAACAACCGACATTTCCAAT
CAACGGCGCTCAAACTATGAACTTTCCTGATCTGATACAACCTCAGCATA
TCATGCGACCTGCAGAGCCCATGAAACAGGTGGTCCGAGTGACTGGCAAC
AAACCTTATCACGGTGGTAACAACACCTGCTTGGAGATTCGAAAGATTCC
AGGAGAACTTAACAACATGGTCAAGTTAAGCgaacatttccaaaaatttg
gtACCATCACCAAATTACAGAGTCCATTCGATGCAGACCCTCAAGGAGCT
TTGATTGAGTTTGCGACAAATCGTGAAGCTTATGCTGCTTATAGTTCGCC
TGAAGCTATCCTTGGCAATCGGTTCATCAAGATGTTCTGGCATAAACCGG
CAAAAGACGCAAATAACCCTCACAACGGTGGTAAAGATAATGTTCGAGGT
ATAGGAGCAACATCTACTACAAGTGAAATCAAAACGGAAACATCTGCACC
CTTACCTCCACCAGAACCAAAGAAAGTGGCAAAAGCTGGTGAATTATATT
TCCGAAACCCTAAATCCGATCCTAAACTCATTCAAATGGAGAAGAAAAAG
GAACTCGAACAATTGAAGAATGAACTGaggaagaaaaagcaaaaaagtta
tGAAGATTTGGTTGAAAAACAGAAACAAATCTTGAGCAAACTTCAAGAAA
AAGGACtttctaaagaagaaaaaaccaaACTGATGAAAACTTTCAGTACT
TGTGATACAACTATTAAGAAGCTGAAACATGAAATTCAAGAAGAAACTGT
CCAAGCAAGGGCTGCACAAAATCTTCATCAAGCCAAACCGTACAAAAATA
CGAAGAAAGAGATTCTTGACAAAGAAATAGATATTATTCATGGCAACTTA
CAAGGAGAAGAACTGGTAGAAGCCAAGAAAGACCTGGAAATGCTTAAAGA
AGAGATGGGCTACGATCCCTCCGCCAGAGGTGGTCGAGGTGGATATCGGG
GGCGTGGTCGAGGAGgtgcctggtggaaaacacgtGGACGAGGGCGTGGT
TCAGCAAGAGCTATGAGCACTGTTGACAATCGACCCAAGAAAATACTGGT
GGCAGGTTATACAGTTGATGAAAAAGATAGTGTCCTTGCACATTTTAACA
CAATCAGTCACGTTGATCAAATCGAAGAAATTTCAACCGAGAAAATGGTC
ATTACGTTTCCAAATCGTAAAGGCGCGGAAATAGCAGCCATCCAGGGCAT
CGACTTCAACGGTAAACAACTGCAATTATCGTGGTTCACTGGACAAATCA
ACAAACCCACCAACACTTCGACGACGGGTGCAACGGACCGACCCAAGATA
CAACGAAGAATGACGCGTTCGCTCAGTCAAAGTCTGATGGAGAAAGACTT
GGAAGACgacttattgGAGGACGTGgacaaagaagaagaagacatGTTGT
TGGCTGGTGTGGATGATGAGGATGATGAGGATGATACTGAATCCATCACT
GATCGATCCTGGAAAAGatgatttgtttgtttgttcctttgtttgtttgt
tcagATGTTTTATTTTCCTAGCACAATTATTCCAATTGTATTTTAACCAT
TTTAGTATTGATATATGTAATAATGTTTTTCTTATTATACTTTATAATGT
GTTTTGAACACAGGGGTCGAGTGTTTCCATTGGGACTAATTgtatggttt
gtttttttggtcTTCTCTTTTGGTGGTTTTCTCTGCTTTGTAATCGAACT
TTTCCTTTATCTTGCAGctctttgatttttgttttgccTAAGGATCATAA
ACTACATTGATGTAAATACTTTCTAGGTaataatttatcatttttgatga
aattttatgACATGAAGGGTTGCCTGtcctaaaaaaagacaaaagaacaa
ctactcaaaaagaaaagagaaaagaattgaactaaaagaaaaatatggca
AAGGCAGGCACCTCCATCATATTgtatattttgttgtttgttttaaaaca
aaaaaatgaaaagaaaaggcAAGGTGTTGAAAAAAGAACAGAaacagaaa
aaatataaaaaagaaaaagactcaGAAAAGCCTTCAACACCAAACACCCC
CAAAACAACCCATAtctattgaaaaacaatttatCTTGAAATATCTTGGC
CAAGACTGCTGGAAGAATGTCACACATCATCGTTGAAGAACCGCCGCAAA
ACTTCGTTTCACTGCACAAAAGGTATATCAATTTGCAAAATCCTGTGTAA
CATTGTATCTgtagttttattttttagccTCCCAAATAGAGATATTGATT
TGGAAGATCTTTCCAGGTTGGTGGTTGCATTGTACTTGATGAAAGAAGTC
AGACACGTGCTAAGCGCCCCAAGCCTGTATGAGAGTGTTATGATGTGGAA
GCACGCAAGgttgaaaattttgtggtaAAATATGTGAATgatgtaacaac
acccctgcctcacagcccggGTGGTATCCAGTATATCTTTTGAGGTATCC
TGCACAGATAAGGGACCGATAATGGACTGAGTTGTCAGACATCGATtggt
ttgtgtgttttttgtggATGGTTTGTTTACATCCTGCTAGTCTTCTGTCC
GTCTAGGTCCGAAACTATCTAACTCCTAAGTTCTGGCTCTTCTTAGTGGC
CAGCTCGGCTATATCGGGAGGTCCGCAACTTTGGCTCTTTTGGAGGATGG
ACCGGTTCCGAACACCGGATAGGCCCCGCTTAGTAAGACCGGTCCTTCTC
CACAGAGGGCAAGCGGACATCTCATTCTTCAATTTCAGTGAGATCTTATT
ACTGCTACTCtctgtttttaaatgaaatttttaatcaaaaacgaaaatat
atatttgtttATTNN
Run BLAST on NCBI

transcript from alignment at sc0000649:182889..192535+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027876 ID=TCONS_00027876|Name=TCONS_00027876|organism=Clytia hemisphaerica|type=transcript|length=9647bp|location=Sequence derived from alignment at sc0000649:182889..192535+ (Clytia hemisphaerica)
aaaaattttcatctcGTTTAGTAAATACAGAAAAAACttctttatcaaaa
tatttcttgtactgAGGAAAGTGAATCATGATAATTGAAAGTGTGGATTC
ATTGAAAACATGGCTCGTCAAAGAATTGGAACCAATGTAAGTTCTTACTC
AATGTGAATTTTGGATCccttttttttctccaattttcttATCAAACATT
TTCTCCAAAGTGACTTTATGTGTGTGTTTGCAATGTTGTTTACGTGAATT
GGAGTTTTAACAttggtttcaatttttttgggcGTTTGCTCGCATCTTTT
TTTATTCTACTctattttcatataaaaaaatcatgagaatgccaaaaaaa
ttgaattaccTAATAACCTGTTTATTTTAGTTGTGATGCTGACCCTGCAG
CATTGGCAAAATATGTTATTGCTTTGGTAAAAAAGGAGAAGTCAGAAGCT
GACCTCAAAGCTCTGTGTGAAGATCAGCTTGATGTATTCCTTGGAGAAGG
TAAATGTGACTGTGATTGATAATTGATCATTATATTTTAAAACTCAAGCT
AATCTCTTCATTCTGTAAGCTGTTAGTTAACTAAAAGAACTCTTTGTATT
TTTCTCTTGTTTTAGAAACCAGACAATTTGTTGGTAATCTATTTAAGGCA
CTGGGAGATAACTCCTATCTCCCTCCTGCACCACTGCTCACCCAACCCAC
TGTTGAGGTAATGGTTTTACTCAAATCTTACAAGGCTCAGAATAAGGCAG
CTTCAAGCATTAAGACAAAAGCTTCCACCACCCAGACCAGACTGGCTTTG
CCCTCTATACGATATCCATATAAATGTTGGCAAATGCTGACATTAGTATC
GAAAGGGTTGAAAATGCCTATGATAATATGATTAATCCCTTAACTCTCTT
ATTTATGATATgcgccattgcaatgtcttctgacattacatcacggaccc
aacagctgattggttgtaagtgacctaaaatcagtcaataggtcacttac
aaccaatcagctattgggtctgtGGAAGACaatgcaatggtgcatatcat
gaatactccTACGTCAaacaattttgtgccaatttaaCATTTCTAGGAGC
CCATCAAAGAGGTGGAACAGAAAGGTACCAAGCGCAAATCTTTTGAAGAA
ACACCAAAAGATGACTTTGAGAAACTTGCTAAAACTGAAAAGAACACTGA
TGTTGGTAAAGTTGTCAGTGATAAAGAAAACATAGACAATGTAGATAACA
GTAACAACGACGGAAGTAAAAACGAAAATAATATTTCGGAAGGGAATGCA
ACAGAAAATAATAGACTTCAAGTTGAGAGAAGTGATGATGTGCGCATGCG
TAGTGTATCTAAAGATCGCTCAATGAAGAGTATGTCACCAAGAGCTCGAC
ATCGAACTCGTCGCTCGTCACGATCACCCAACAGGAGCAGCCGACATTCT
AGACACATGCCAAGTGGTAGTGGTAGTAGTAGGAGCACACGTAGTGACAA
ATCACGAGATTCGCGAAGCAACAGAGATAATGGTAGAAGAACCAAATCAA
GCCGAAGAGAGGCAACTAGAGAAAGATGCAGAGACTACGAAGGTTTGTTA
TTTGAAAAAATGGCCATCCAAATTAATtcaaaagagaaaacattctttTG
GATATACCTATATAAATTTTAAAAGCTACGTAAACTAAAATAACTTAACT
TGGATTGAATATTGTCAAAGATTTATCGCGTTTTATGCAGCCCTATAAGC
CTGAAACCAAATCCCTTGTGATGTTAGGGTTGATAGGTGCTGACATTGAG
ATtgtgtttattttcattgcCAACTGATTCCCTGTGAACACCCTCTTTCT
GTTATCATTATTCTTGAAATTTACTTCCTTTTTGCTTTGACTGTTTGATT
TTAGAAAAGGgtgaaatgtcaaaaatattgaATCCCTGCAAATaatgttt
tgtgtttgttttagAGAAGGGATATTGTATGCTTGGCGAGACATGCCGTT
TTGATCATGGACGCGATCCTGTGGAGGTGGACGATCGCAATCTTCCACAT
ATGCTTTCCCTAGCCACTGCAAATACCTTCCCTCCTTCCTCTCAACCCAA
CAACGCAGCTACCATGGCAAACCCATCTGTCCCAGTCTTCCAAAATGTCA
TTGGTCAACGCCCAATGGTGCCACCTATAGGAACGGCCAATCTCAACACC
TCTCTGACAACAGTGCAAGTTCAAAACACGCGACCCTCGCCCGTTGAGAT
TAACACGCAAGTCCCTATCTTTCGACCACGCAACCCAATGGCTTTGTTCA
GAAATATTTCTCCAACAGGTAAGAGAAATAAAAACACCAGAGGTTGAGCA
GTTAACCTTACTAAAAAATGGTCTCCACTTCTTATTAGGTCGAGGAATAt
ccagaaatttcaaaatataacaataggtgGCTTACTCCTAGTATTGTTAA
CAACATGGGACGAAACTTTGGCATTAAGAATTCAAAACGCCATGGTGGCA
ACCACATATGACTAGTTCAGTCGAAAGTAGATTgacttttgagattttct
tttgAGGGGAGCTTGCGATTGGATCCTGCCAATTGTTTCATGGTGAAAAA
GCTAACGTCATAGGCAAAAGTTGTACAGTATACCTAAAGATTCTTTTCAA
TGTTGAGTTTTATCGAAATAATTGATGCCATTTAACgtcatgaaattttg
accaaaaaggtGTGTTAGTCAACAAGTCTTAACGTacaaagaaatcaaac
aaatttaaCACGGTCATTGGTCATTCGCACTTATCTGACAGAATTTCAAG
CTTTATAAAATGCATGTAtttctttatgttttttttgtatatCTGTAGAA
GTTGCCCCAAAAAATAGTAGTTTATACAAAATTCAGTATCATTGAACAGC
TCAACGTGGCTCATTTGTTAGCATTACTACTATTTACCTATAGCCTGAGG
TGCCTTTATGCAAAGGTTGTGTGATGAAGGTTGTATTGGTTCAAGATTAC
CCTTGGATAGATTCTTAAATATTTTTACCTTatctaaaacattttttatt
aaaaattgtgaCTCGACCTATGAATCACTAGGTACAGAGGAAAACCATTG
CTATTTGTCCATGTTGTAAAAATGACAAATCCATGCATAATAAGGacaaa
taattttctttatttcaaacCAGGTGTTCCACCAGCGATTCCAGGTCAAC
CAACACCACCACAAGCGGCTATTCCACACCAACAACCACCCATCAGTGAA
ACGTACAACCCTGAACAACCTTCTATTCTTGAAACGGATGAAGTGCTGAA
AGAAACCAAGATCTCTGTTGACAAAGTGAAAGAAGACGCAGATCGTTCAC
AAGACGAGCTCGTCCAAATCGCGATGGGAAACGTCCCGCTCACACCTATC
CTCGGCCAACAACCGACATTTCCAATCAACGGCGCTCAAACTATGAACTT
TCCTGATCTGATACAACCTCAGCATATCATGCGACCTGCAGAGCCCATGA
AACAGGTGGTCCGAGTGACTGGCAACAAACCTTATCACGGTGGTAACAAC
ACCTGCTTGGAGATTCGAAAGATTCCAGGAGAACTTAACAACATGGTCAA
GTTAAGCgaacatttccaaaaatttggtACCATCACCAAATTACAGGTAT
GTCGTCACCTACTAATGAATTGACAAATGTTATGAACTTTGCTTGGCTAT
ATCAAAACAGCTGTCCATTTTCTAGCTCTTTCTATGCCCCTTTTTCAGTT
acgaaattttgttttgttttaaattacAGAGTCCATTCGATGCAGACCCT
CAAGGAGCTTTGATTGAGTTTGCGACAAATCGTGAAGCTTATGCTGCTTA
TAGTTCGCCTGAAGCTATCCTTGGCAATCGGTTCATCAAGATGTTCTGGC
ATAAACCGGCAAAAGACGCAAATAACCCTCACAACGGTGGTAAAGATAAT
GTGAGTATCAGATTCCTGTCATCTCATTTTTTGTATCAGCTCGCTTCTTT
TTTTCTATATATTCTCTGTTTGGAATTTGATAAGTTGTTGTTTATTCGAT
ATCTATAGGTGAAATGTTTTAAAGATTTGAACAGGCATACCTGACATTTG
ATGTGACGTAtcattcttttttctcttttttaataatCTGTGATTAAAGT
CGTTCTCTTGATGACAGGCAGACAGAAATGTTTCGTATATAAGTTGAGAG
AAACTTGTTTTATGCTATAGGTTCGAGGTATAGGAGCAACATCTACTACA
AGTGAAATCAAAACGGAAACATCTGCACCCTTACCTCCACCAGAACCAAA
GANACCTGACATTTGATGTGACGTAtcattcttttttctcttttttaata
atCTGTGATTAAAGTCGTTCTCTTGACGACAGGCAGACAGAAATGTTTCG
TATATAAGTTGAGAGAAACTTGTTCTATGCTATAGGTTCGAGGTATAGGA
GCAACATCTACTACAAGTGAAATCAAAACGGAAACATCTGCACCCTTACC
TCCACCAGAACCAAAGAAAGTGGCAAAAGCTGGTGAATTATATTTCCGAA
ACCCTAAATCCGATCCTAAACTCATTCAAATGGAGAAGAAAAAGGTTTGT
CGTTTTCTACTTACATTTGAACAGGTTAACTAACTCGACCGGTTCGTTAT
TCTTACTTGATTGCTTCCTATTTTTATAGACCAAGACTTTATATAGTATT
TCACACTAAATAATCTTATGTTTCTTTCAGGAACTCGAACAATTGAAGAA
TGAACTGaggaagaaaaagcaaaaaagttatGAAGATTTGGTTGAAAAAC
AGAAACAAATCTTGAGCAAACTTCAAGAAAAAGGACtttctaaagaagaa
aaaaccaaACTGATGAAAGTGAGTTATTCATATTggtatcaaataatttt
ttattggtatcaagattttttcactgttttatGTTGATACAGCTTCAAGA
TTTCTTCAACTCGGAGATGAAGCGTTCATTTTGCAttggaaacaaaaaat
attgaagcaTAATCAAGATCTTTTTGaatatgtttaaaaattacTTCTCA
TTGTGACTTTCTTCTTAGACTTTCAGTACTTGTGATACAACTATTAAGAA
GCTGAAACATGAAATTCAAGAAGAAACTGTCCAAGCAAGGGCTGCACAAA
ATCTTCATCAAGCCAAACCGTACAAAAATGTAGGTTGTTTTTCCTTCTTT
TAGTGTTCTAAGCATCATCTCAAGGCATCATTAGAAAATAATGGAAATAT
TATTACACAGTttgttatcattattttttgtatttctttATAGACGAAGA
AAGAGATTCTTGACAAAGAAATAGATATTATTCATGGCAACTTACAAGGA
GAAGAACTGGTAGAAGCCAAGAAAGACCTGGAAATGCTTAAAGAAGAGGT
AAATTATTTTCAGGGAATGATGTGTATAAGAAAGGCCAAACAATACAGGC
TTTTAGAATGAAAGTCGTCGATTTTCTAGTTACGTTTCTCTCTGGAATGG
TATTTCCTGTAATTATGTCCCTAAtcgtttattattttctttcacCAGAT
GGGCTACGATCCCTCCGCCAGAGGTGGTCGAGGTGGATATCGGGGGCGTG
GTCGAGGAGgtgcctggtggaaaacacgtGGACGAGGGCGTGGCTCAGCA
AGAGCTATGAGCACTGTTGACAATCGACCCAAGAAAATACTGGTGGCAGG
TTATACAGTTGATGAAAAAGATAGTGTCCTTGCACANGGGGCGTGGTCGA
GGAGgtgcctggtggaaaacacgtGGACGAGGGCGTGGTTCAGCAAGAGC
TATGAGCACTGTTGACAATCGACCCAAGAAAATACTGGTGGCAGGTTATA
CAGTTGATGAAAAAGATAGTGTCCTTGCACATTTTAACGTAAGTCAAAAA
TCGCGGAActggtaaaatatttctcatattgtactcgcaaatgtccgata
actattacttagaGAGTTGGTGGAATCTTCTAAGGAACTTTTTTGCAGGC
ATTAATCCAGCAGATTTAGATGTTATTAAAGTAAGAGTCAATCTGCCCTA
ACCGTTTCAACACAAAGCAAACTATGAATATAGAcaaattgtttttcttg
tttcatATAGTTTTGACACGTGGTTTGCCCTTTAAAGCAGACCGTGTCTT
TGTTGAATTTTTCTGTTCGCATATTGTAATGGAACATTGAAGCATTTTGT
TTTACCGTTAGGGGTCCTTTAAGAGCCCCAGATTAGTAACCGAGTCCAAG
TTACCCATATTTCATCGCTCATCAGTCCTTATAGCTGTTTACCCTCTTTA
TTTACAGACAATCAGTCACGTTGATCAAATCGAAGAAATTTCAACCGAGA
AAATGGTCATTACGTTTCCAAATCGTAAAGGCGCGGAAATAGCAGCCATC
CAGGGCATCGACTTCAACGGTAAACAACTGCAATTATCGTGGTTCACTGG
ACAAATCAACAAACCCACCAACACTTCGACGACGGGTGCAACGGACCGAC
CCAAGATACAACGAAGAATGACGCGTTCGCTCAGTCAAAGTCTGATGGAG
AAAGACTTGGAAGACgacttattggtatatattacATAATCTCTCTATTC
TTCAAGTCAATTCAGGTGAACCCTGAGAATCGAAAATATTTAATCATTCA
TCTGTTGCacagtttgttttgttttttcttaggATTGGGGTCGATTAACA
TTTCAGACGAAAGAACACTGATATTGTTTGTTATTTTAaatttcgtttcg
tttcgtttgTTTCAGGAGGACGTGgacaaagaagaagaagacatGTTGTT
GGCTGGTGTGGATGATGAGGATGATGAGGATGATACTGAATCCATCACTG
ATCGATCCTGGAAAAGatgatttgtttgtttgttcctttgtttgtttgtt
cagATGTTTTATTTTCCTAGCACAATTATTCCAATTGTATTTTAACCATT
TTAGTATTGATATATGTAATAATGTTTTTCTTATTATACTTTATAATGTG
TTTTGAACACAGGGGTCGAGTGTTTCCATTGGGACTAATTgtatggtttg
tttttttggtcTTCTCTTTTGGTGGTTTTCTCTGCTTTGTAATCGAACTT
TTCCTTTATCTTGCAGctctttgatttttgttttgccTAAGGATCATAAA
CTACATTGATGTAAATACTTTCTAGGTaataatttatcatttttgatgaa
attttatgACATGAAGGGTTGCCTGtcctaaaaaaagacaaaagaacaac
tactcaaaaagaaaagagaaaagaattgaactaaaagaaaaatatggcaA
AGGCAGGCACCTCCATCATATTgtatattttgttgtttgttttaaaacaa
aaaaatgaaaagaaaaggcAAGGTGTTGAAAAAAGAACAGAaacagaaaa
aatataaaaaagaaaaagactcaGAAAAGCCTTCAACACCAAACACCCCC
AAAACAACCCATAtctattgaaaaacaatttatCTTGAAATATCTTGGCC
AAGACTGCTGGAAGAATGTCACACATCATCGTTGAAGAACCGCCGCAAAA
CTTCGTTTCACTGCACAAAAGGTATATCAATTTGCAAAATCCTGTGTAAC
ATTGTATCTgtagttttattttttagccTCCCAAATAGAGATATTGATTT
GGAAGATCTTTCCAGGTTGGTGGTTGCATTGTACTTGATGAAAGAAGTCA
GACACGTGCTAAGCGCCCCAAGCCTGTATGAGAGTGTTATGATGTGGAAG
CACGCAAGGTAATTTTCGTTGCAAACAATGATCTGATGTACACCATCCTT
AAATTCCTTCCTTaacttttcaagttttagcaTAATATTACTGGATTgac
caatttttttcatttcctgCCTAtcctacatgtttttttctttataagca
ttgcgtttataagcataaataggctcatatatggcaaaaatttaagcatt
ATGCTAAACATCACTTTGagtcttcattttcagaatttgtttgtttttgg
ctggaatttcgacatttctctaaaattttgcttaagatataagcatccct
taaagcatttttcagctttgtaaatctctcgatctaagcatttccgagcc
agcttttggatttttgtatgcttataaNCAGCTTTGTAAATCTCTCGATC
TAAGCATTTCCGAGCcagcttttggatttttgtatgcttattaaaaaaaa
catgtatctttCTGGACGAATAACAAAAACAGGTCAGTGGACTTTGCAAC
CTTGTTTGATATTCCACATAATATGGTTGagtcttcttaactcgaacaag
attTCTGGTCCATTCAAGTATCAAATCCTTATTATAAAgtcgaaaaatat
tgaattccCCTGGCttgttcgagttacggagatGTTATGTTTAGGACTAA
TGAACTAAAGAGACTTACACATTAACTGGCTAAAATGTGACCTGTTGCTG
TATTTGCATTCATAGAATAAAATGTTGTTATTATGGCTGACTATTCTTGT
TTTTAAAAGACCAGTAAAACTTTTGTAAAGGCTTTGGTGTCattattttt
agggaaaatagAGGTATTTTAGACTTTATACACAATTCTTGTTATACGGT
AATCCAGGCTCTGTTTTTCCTGCTTTTTCGAGCCTCATTTGTGTTATATT
TCATACAGcccctgaccccgagaatgtaggtgaattttgaatcagacctg
aaagatgtagatttgcatttcaaaaaatattgaatgttttcaatgaaatt
ttgaactcccaaaatcctttccgccagaggttagtttcattacttttgat
agataggctaattcTTTTGGTCTTTGAAGTTGACttccattttcgttata
acccctCAGAATGTaaaagtaaaatgttgatattttttcaattggattaa
tcataacagcaaattttagaaatattttgtgccaaaacaactttctaaag
agcattttgttattctgaaaattggattttttcgctttttaaccctCAGA
TCGaaggtgaaaagattcggttgttgagagcggaatttcagtattcatcg
gaaataattgttctctaagtgaaattcatactttagaaatatactctgGC
AAAAATTATGTTAGTTTTATCGTGTtacaaatgaggaaaagtaaaagaaa
ggacgaaaagaagagacaagaaagttgttttcattttttaggttgaaaat
tttgtggtaAAATATGTGAATgatgtaacaacacccctgcctcacagccc
ggGTGGTATCCAGTATATCTTTTGAGGTATCCTGCACAGATAAGGGACCG
ATAATGGACTGAGTTGTCAGACATCGATtggtttgtgtgttttttgtggA
TGGTTTGTTTACATCCTGCTAGTCTTCTGTCCGTCTAGGTCCGAAACTAT
CTAACTCCTAAGTTCTGGCTCTTCTTAGTGGCCAGCTCGGCTATATCGGG
AGGTCCGCAACTTTGGCTCTTTTGGAGGATGGACCGGTTCCGAACACCGG
ATAGGCCCCGCTTAGTAAGACCGGTCCTTCTCCACAGAGGGCAAGCGGAC
ATCTCATTCTTCAATTTCAGTGAGATCTTATTACTGCTACTCtctgtttt
taaatgaaatttttaatcaaaaacgaaaatatatatttgtttATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015757XLOC_015757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027876-exon-sc0000649-1491911889:182889..183024TCONS_00027876-exon-sc0000649-1491911889:182889..183024Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:182889..183024TCONS_00027876-exon-sc0000649-1510915933:182889..183024Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:182889..183024TCONS_00027876-exon-sc0000649-1575043694:182889..183024Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:183269..183387TCONS_00027876-exon-sc0000649-1491911889:183269..183387Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:183269..183387TCONS_00027876-exon-sc0000649-1510915933:183269..183387Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:183269..183387TCONS_00027876-exon-sc0000649-1575043694:183269..183387Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:183504..183595TCONS_00027876-exon-sc0000649-1491911889:183504..183595Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:183504..183595TCONS_00027876-exon-sc0000649-1510915933:183504..183595Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:183504..183595TCONS_00027876-exon-sc0000649-1575043694:183504..183595Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:183985..184480TCONS_00027876-exon-sc0000649-1491911889:183985..184480Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:183985..184480TCONS_00027876-exon-sc0000649-1510915933:183985..184480Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:183985..184480TCONS_00027876-exon-sc0000649-1575043694:183985..184480Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:184853..185206TCONS_00027876-exon-sc0000649-1491911889:184853..185206Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:184853..185206TCONS_00027876-exon-sc0000649-1510915933:184853..185206Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:184853..185206TCONS_00027876-exon-sc0000649-1575043694:184853..185206Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:186062..186534TCONS_00027876-exon-sc0000649-1491911889:186062..186534Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:186062..186534TCONS_00027876-exon-sc0000649-1510915933:186062..186534Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:186062..186534TCONS_00027876-exon-sc0000649-1575043694:186062..186534Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:186668..186838TCONS_00027876-exon-sc0000649-1491911889:186668..186838Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:186668..186838TCONS_00027876-exon-sc0000649-1510915933:186668..186838Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:186668..186838TCONS_00027876-exon-sc0000649-1575043694:186668..186838Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:187324..187482TCONS_00027876-exon-sc0000649-1491911889:187324..187482Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:187324..187482TCONS_00027876-exon-sc0000649-1510915933:187324..187482Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:187324..187482TCONS_00027876-exon-sc0000649-1575043694:187324..187482Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:187619..187756TCONS_00027876-exon-sc0000649-1491911889:187619..187756Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:187619..187756TCONS_00027876-exon-sc0000649-1510915933:187619..187756Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:187619..187756TCONS_00027876-exon-sc0000649-1575043694:187619..187756Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:187957..188067TCONS_00027876-exon-sc0000649-1491911889:187957..188067Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:187957..188067TCONS_00027876-exon-sc0000649-1510915933:187957..188067Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:187957..188067TCONS_00027876-exon-sc0000649-1575043694:187957..188067Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:188182..188286TCONS_00027876-exon-sc0000649-1491911889:188182..188286Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:188182..188286TCONS_00027876-exon-sc0000649-1510915933:188182..188286Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:188182..188286TCONS_00027876-exon-sc0000649-1575043694:188182..188286Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:188437..188497TCONS_00027876-exon-sc0000649-1491911889:188437..188497Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:188437..188497TCONS_00027876-exon-sc0000649-1510915933:188437..188497Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:188437..188497TCONS_00027876-exon-sc0000649-1575043694:188437..188497Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:188643..188776TCONS_00027876-exon-sc0000649-1491911889:188643..188776Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:188643..188776TCONS_00027876-exon-sc0000649-1510915933:188643..188776Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:188643..188776TCONS_00027876-exon-sc0000649-1575043694:188643..188776Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:189196..189462TCONS_00027876-exon-sc0000649-1491911889:189196..189462Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:189196..189462TCONS_00027876-exon-sc0000649-1510915933:189196..189462Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:189196..189462TCONS_00027876-exon-sc0000649-1575043694:189196..189462Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:189654..190646TCONS_00027876-exon-sc0000649-1491911889:189654..190646Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:189654..190646TCONS_00027876-exon-sc0000649-1510915933:189654..190646Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:189654..190646TCONS_00027876-exon-sc0000649-1575043694:189654..190646Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1491911889:192080..192535TCONS_00027876-exon-sc0000649-1491911889:192080..192535Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1510915933:192080..192535TCONS_00027876-exon-sc0000649-1510915933:192080..192535Clytia hemisphaericaexon
TCONS_00027876-exon-sc0000649-1575043694:192080..192535TCONS_00027876-exon-sc0000649-1575043694:192080..192535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000649supercontigsc0000649:182889..192535 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.966696	1.44661	0.624464	0.481879	1.23841	1.63436	1.39593	1.51326	1.28963	1.564	0.783514	1.25544	0.32146	0.179932	0.795937	0.435426	0.471702	0.345208	0.707966	0.438814	0.353809	0.344744	0.101805	0.111845	0.527992	0.471221	0.770646	0.594187	0.836311	0.635557
Blast
[Close]
BLAST of TCONS_00027876 vs. Swiss-Prot (Human)
Match: RBM26 (RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.570e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:   78 MIIESVDSLKTWLVKELEPICDADPAALAKYVIALVKKEKSEADLKALCEDQLDVFLGEETRQFVGNLFKALGDNSYLPP 317
            MIIE+ ++LK+WL K LEPICDADP+ALAKYV+ALVKK+KSE +LKALC DQLDVFL +ET+ FV  LF A+   SYLPP
Sbjct:    5 MIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPP 84

HSP 2 Score: 107.457 bits (267), Expect = 3.066e-23
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 3 
Query: 1563 GGNNTCLEIRKIPGELNNMVKLSEHFQKFGTITKLQSPFDADPQGALIEFATNREAYAAYSSPEAILGNRFIKMFWHK 1796
            G  NT LE+RK+P ELNN+ KL+EHF +FGT+  LQ  ++ DP+GALI+FAT  EA  A SS EA+L NRFIK++WH+
Sbjct:  528 GNENTKLELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHR 605
The following BLAST results are available for this feature:
BLAST of TCONS_00027876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM263.570e-2770.00RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE... [more]
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