TCONS_00027870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027870
Unique NameTCONS_00027870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027870 ID=TCONS_00027870|Name=TCONS_00027870|organism=Clytia hemisphaerica|type=transcript|length=2393bp
TCGTGTTCATTTTGGGCGCGCCGATCATTCTTGATAGAAATAGTTCACAT
TCTTTgcgaaaacaaaagtaaacttttcaagcaaagatttttgaaatatt
tctgtACGTTTCAAACATTTGGAATTCTTCTTATAATAAAATATGAAAAA
AAGTAGCAATTTTAGTAAATGTACTGTAGATGAATCTTTAACAACCATAA
ACAAAGTCTAAAATCGAACCAAAATCTGATCACAAAACATGGCGGATGAT
AAATTGAGAGAACATTCAGTTAGAGATCTCAACCAGAATGAAAGAGTATC
AGCAAGTACTGACCCTGAATCCATGGCTTCTGATGCTGAGGGTGTTTGGA
GTCCAGACATAGAACAAAGTTTTCAAGAAGCATTAGCAATCTACCCACCA
TGTGGTAGAAGAAAAATTATACTGTCAGACGAAGGGAAAATGTACGGACG
TAATGAACTTATTGCACGATATATCAAACTTAGGACGGGCAAAACCAGAA
GTCGAAAGCAGGTTTCAAGCCATATTCAAGTTCTTGCTCGCCGTAAGGCC
AGGGACATACAAGACTCTCAATCAAAAGACAAGGCACTTCAAGCAATGGC
CAACCTAACTTCTTCACAGATAGTATCTGGAAACAGTCTACATCCATCCA
AATTGCTGGAGCCAGCGGTCAAGAGAGAACTCAATTTGAGCCCACAAAAT
TATTGGCCATCTCCTCAAAATGGTGTACCTCCTCCACCTGCACCGCCCAT
TGGATATCCGTTCACAACTGCAAGTGCTTTTTATGCCAGTACCATAACAC
AAGCTTCAACCACTTCCCACGCGCAAGGCATCAATTCCGACAGACATTCT
TCCTCTCGTACTTTAAGTAATCCAACTTCACCAACTATTCATGATGGACC
ACCGCCACCATTACCACACAGTTCCAGTCTGCAACCCAACAACACGACCT
CTAGCCCACCATGGCAGACAAGACATTCCCAAAACCAAATGCCACTTCGC
TTACTTGATTTTTCTGCATATATCGAAATTGACAAAACGGAAAGCTACCA
CAAGCATGTctttgtaaatttgaataactaTCGCATATTTGAAGATCCTG
GAATCGAATCAATTGATATTCGACAAATTTATGACAAGTTTCCTGAAAAG
AAAGGTGGTTTGAAAGAACTTTACGAAAAGGGACCTCAAAATCTCTTCTT
CTTGGTCAAGTTTTGGGCTGATTTGAATACGAATATATCGGATGATGCAG
CTGCTGCGTACAGAGTATCCAGCACATATGAATCAACAGAAAATATGACG
ATCACTTGTTCTACCAAGGTTTGCTCTTTCGGTAAGCAAGTTGTGGAGAA
AGTGGAAACGGAGTTCTCATCTTACGAAAATGGCCGCTACGTTTACAGAA
TTCATCGGTCAGCCATGTGCGAATACATGATCAATTTTATCCACAAGCTC
AAACATTTACCAGAGAAATTCATGATGAATTCAGTTCTCGAAAACTTCAC
AATTTTACAAGTCGTAACAAATCGACAAACTCAAGAGACGTTACTTTGTT
TGGCTTttgtttttgaagtttcttCAAATGAACATGGTGCACAGcataat
gttttcaaattagTCAAAGATTAAATCTTAAATAGctctatttttaactt
ttaccaTTATAAATCAGAATCAGTGTTGTGAAAAGTTGTTATTTTTTCTA
CGCGAGTAAATTTTACGCAAacatatatttttggaaaaagaaactGTATA
GATAATTAGTACCTACTTTTGTAAATATCTAGTGATGGAATATGTATTTT
TCTCGTTATATTTTCCTCATTTTAAAAGAGGGTTAATGCtttattgataa
aattttatattGAGTACGATTTTAGAGGTGCAAGTAATTCCGATCTCTTC
TCTATGTTGGCTATTATTGAAGGTGTTTTAGGAGAAGAAATTTTAACAGG
AAAATAAATCGACAGATGGGCCATTCTTCAATTTCGGTGCAATTTGATGA
AATGATTTTTGACGAATGACTTTTTATTTGTGGAGAGCAATaagagtttt
tttctatttttgctaTATTTGGTTGAGTTAGAGGAGGTTTAACGTCCATT
AAGGTATATAAGTTATTATGACATAAAAGGCAAGCTACGGAAAATCCATT
GTAgagaatacactttttctaaatttgaaaattcattttcGTGGATAGGA
GTTCCCGTATTTTTCCATagttttcataaatttttcgaTAGACCCTTCCT
GATAACACCAACAACAAATAAGAACGGGATGCTGATctatttttttaatg
actttaTCTTAGTGTTTTAGCTAAGTATAAAATTTTGTATCAGttagttt
tcaaagagaaatttGTTAAAAGATGTACATTTGGAAAACTGAA
Run BLAST on NCBI

transcript from alignment at sc0000649:90185..103426+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027870 ID=TCONS_00027870|Name=TCONS_00027870|organism=Clytia hemisphaerica|type=transcript|length=13242bp|location=Sequence derived from alignment at sc0000649:90185..103426+ (Clytia hemisphaerica)
TCGTGTTCATTTTGGGCGCGCCGATCATTCTTGATAGAAATAGTTCACAT
TCTTTgcgaaaacaaaagtaaacttttcaagcaaagatttttgaaatatt
tctgtACGTTTCAAACATTTGGAATTCTTCTTATAATAAAATATGGTATG
ttatttcttcattttacaACGGGTATAGAACTGTCAATGCGTCCtaaaaa
atatgttattttctAAAACCTTTCTAAAAAAGACATCGGTTCCTTGATTC
CTACTTTTTTAGTATATTTAATCGAAAGACTCTACTTTTTAGAATTTCTA
CATTGATGTTCATGAATTTTTAATGCTGTTCACACGATTTCTCTCTCCCT
TCCATAGAAAAAAAGTAGCAATTTTAGTAAATGTACTGTAGATGAATCTT
TAACAACCATAAACAAAGTCTAAAATCGAACCAAAATCTGATCACAAAAC
ATGGCGGATGATAAATTGAGAGAACATTCAGTTAGAGATCTCAACCAGAA
TGAAAGAGTATCAGCAAGTACTGACCCTGAATCCATGGCTTCTGATGCTG
AGGGTGTTTGGAGTCCAGACATAGAACAAAGTTTTCAAGAAGCATTAGCA
ATCTACCCACCATGTGGTAGAAGAAAAATTATACTGTCAGACGAAGGGAA
AATGTACGGTAAGTGAGTCACAACGATTTTgttattttagtgtttttctt
ctataatctttttttcatgtcttcttaaaaaagaagacaagaCAAGTATT
TGATAAATGTAATCTTAataactgaaatatttttgaattagtAGGAGCAA
TTAAAAGTCTTTATGACAGTTAGATTCCTTGCATTGTACTAAGTTTTGtc
aaattctttcaaaacttGCAAGTggttataaaaacaaaaggaatttgatc
cattttattttttttgtattaagTTATGCTTGGCTTTTAAGGAATTCTTC
ATATATAAATGAACTTATAAAACCTTGATTTATTGTGTGTATTCTCATTT
TGTTTACTCACTTTAGAAAATTTtacacaaatatttttttagcttttggt
GGGGTTGAATCACATAACCCACCTAGGACAGTCTGGCATATCTTTGCAAT
TGCCTGGGGTGTAACTAACCCATTTTAAATGTGCAAAACATAggcaaaac
atgctaatttgaccTTTAAATAGAAAATGTACCTTAAATAcaaactcaaa
tcaaaacaaaaatggtagagtagagctgtgagcggagctgcgtagttcat
ttgttttgaaattttgctgctttgattggtcagtcatttgagttACCCGA
ATTCACGGTATCTTATGTAAAATATTCTCCaaatatttaagaaaaaaaac
catTTACCCAGTGGAATTTTACATGGTATTAGCTACTTACATTTTCTAGC
CATTGCATCAGATTGCATTTCAACCAATTGCAGTTTcaaacagggggggg
gtcggtagtaaaatctcagacatatatgagtagtaaaaggatctttacga
atttttacataccaccacccagactcttggaagaagtattttactaccct
ggtagtaaaagtctttgggacaatttgtcatggagaccacctattttttg
gttgcttttcggactgattttacaaaaaaaattaaagtcttttttacatt
gacaaaaaaattcgaGAATTtattgtttgcagcaaacaactttctaGACA
GGAAACCCACCTATCGCTTCACTGCGTAAACCTCCAAAATGTCGAATTCC
TTGTTCAGCAGCTATTTCCCTCATCACTTTGtcagtcaggaacagtcgcc
ttattaggagacacctcctgattaggagacccgtctcctaatcaggaggt
tcacgtTTCTTAATCAGGAGACGGGTGTAATTATCTCGTGAAAGAGCAAA
CATAGATGATGCGATAGCGTTCCCTTCTTCTTTGAAGGGAATAGATTTTG
GATTGCTTGAGACACTCGCGTTAATTGTTTGAGGTGCCTTTTATCCTTCT
TAGAAAGGATTTTTGAATGTCTTTAAGTCTCTGAAAGAGACCAACAGTTG
GACTCCATAGAACAGATGACCGCGATGAAAACGTTTGCAGTATCCATGAA
GTTaaactttttgctttttgaatGGTTGAAATTACTTGTTCTTTAAACAA
GCAATCGTTACTTATCAGGATTCCCAAatcttttataacatttttgCGTT
CAATGATATTGCCTGATGGTGATGTATGTTTGTTTGGTCCTtgataaatt
gattttgaccatATCTCAACATGcatttttaattgagaaatGTTATATTA
TCTTTTAGGACGTAATGAACTTATTGCACGATATATCAAACTTAGGACGG
GCAAAACCAGAAGTCGAAAGCAGGTATGTAAGAAAACACAGATAATTTTT
AGCCACGattgatttcaaaatagccAGAATCTGCAATATTCATCATTAAT
TAATTAACAAGCAGTAAGTGATATATGTAAGTCACAGGTCAACAGTTCAA
ggacggttagtgtaaaacacaggtcacaggtcacgggtcagtgttgacag
gtcagcttcaattactgtaaaacacaaagaaaatgtttgaaaaacagttg
ttaatgtcaaaaatataattccaaaggtattttattgatctagaactatt
ttaaagctaaacaTCTACCCAAGTGCTTACCACGTGATTTTgcgttttat
gccgtgtataacacggacctgtaatacttgtattatatattacatctata
tcacacatgtaaacaaaatatcttttcaatgttataagcatgttacgtat
gttatatacaaagaataaagaaatattcgaatatcgatctcatctttgct
ttaaacagccccctatcaggaaaatagctatttcacaatcactatgtcat
atctcattttatcacctgcatcaccttgggtatgataacaagaattgatg
aaaataatgtcaatgagattatattttataaatgtttcaacatttttatc
ccctgctttgtatttttgataaaatgacggcactattttcatctctctaa
aacagctctcttggagtatttcttgttttcaaaacctgtcaatctatatc
cacttgcagtgtcagcatcctattatgcatgaagaatattttattgttaa
ttggtgtaaaaaacctcatacttttgagataacatcattatttacataat
ttaagtgtcatttgttgtcaatgtttggggttgatgatttgtcatTTAAG
TCTCctaaataacatattttgatattacatttgcattacatataatattt
tcaggagcttatgttatgagttgtatgttaagagtgcgttacagttttcc
ggtctgtaatttgtatgacctgtgacccgtgacctgtgacctgtgacctg
cgttttacactaaccggttCAAGGATCAGTGCTGACAGTGCTTTAactac
tgtaaaacacaaagaaagcACTTGTTATTGTCAACAATATCCTTATGCAA
GTATTTTAATGATCTGTAACTTATTGAAAGGTCAAAATCTATCTATGTGT
CCACCACATAGTGGTGGAGTAGAGTATGGAAAGGGCCTCAATCCCCTTTC
TATCTTGGTATCCCCCAACTTTCAAAAGTGTCCATCCCCAAGGTTTTTTA
ACTCAATTCTTTAAGATGCAGGGTTCGTACATAGGCtgtttttcctgttt
ttcctgttttttgacttttttcctgttttcctgtttttttgtcAGTTATT
TCATGAAAGTCctgtttttttctcatttagctttagaaaaaatcaaaagt
ggaagaaaaagtaaatataGTTAATAAGATATGAGATAAGTATCGTTGAA
ATCAATTGTATAACTTCAATCTATTCTACTGTACTAGTATCTGCAAGCTT
AGGTAGGGCTGAGTATGGGTGTTGTTACGTATAatattggctaggaattg
ggttattatcagttagggttagggttggagcttgaaacaagcactctttt
gtgatttttcttaatacagtctggtctgcaatttgtacaatataaatagc
cgtcagaagcgCTATCCTAGCATGAATCCATTGCGCAATGGATAGGGcaa
tgggtttcaaaacatcggaactttgcatttagtgggttcgaatcccaccg
gtggcaatccgtcggtaagtcattcagtaagttagaaaacataaaataac
tcacaaagaaccagaaagtcagaaaaactacgaacaagagactggaaagt
acgaaataagtctaGATCTGTCTTTCATCTTTGTGAAGAAGACACGACCT
ACCATATACATAGACTTCAAATAATTAGGTATTTAGGCCAAAATTAAccg
aaatcacaaaaaaacagggttttgcccgggaaaaaatctaaaatctgttc
tgttgcTGCTACAAGCCTCAAATTAGAATTAAAATATTCCTTGGAAAAAG
TAGGATTGGAAtttaacaattatatacctctaccatgtatgtaaaaattc
aaagaattagGTATATAGGCCAAAACTGACCAAAATCAGGGAAAAACGGG
GTTTTACCTTGAAGtaaaacctaaaatctgttctgttggtgctacaaacc
tcaaattaggcttaaaatgttctttggaaGAAAGTAGGATTGGAAAGTTA
CAATTATATGTTATAGTTACTTACATCTACACCGTATTTTGTAAGGTTAT
TTATGTTATGAAACCTAGGCTAAAAGTGTCAGTTTTCCTCTGAAATTCCT
GTTTTTTCACATTCATCAAGCCTGTTTTTATTATGAAAAATAGCCTGTTT
TGTATTGGAAGGCCTGTACGAACCCTGCAAATGTCAACTGNGAAAAATAG
CCTGTTTTGTATTGGAAGGCCTGTACGAACCCTGAAGATGTCAACTGGAT
TTTCACTCCTAATCtccaattttgaatattttttgccatTTCCGAAATTC
TGCGAAACTTTTTGCTGAATTCAGTTTTTCTGCACTAAAATTGCCCAATT
TTCCATCTCCAACTACCTTAAGacatgaacatataaataaaagactggac
gtctatcttctattgtgtctttgaagcgagcgTCGTTGCcgtctgtattt
caaaattggtataaaaaatcagacaatattccgtcacaattttgtttctt
aaaattacttaggtaaaaggattgataaaGCTTAAACATTAACTgtaatt
cacaaaagaattattctAAATATTTTCATGAGTTTGCAGtatattttttc
aacatttttcaacgcAGAAATGCTGATTTCAACTGCATGTATACTTTtta
atcacttttgtcactccaataactttttttatgatatgaaaaaaatagta
tgccaaagttgagagcctgtgtcataagattatcataatttgaatcccaT
ACTCTCTAAAATTTTTGGGTCCAAACTTAAAGATATTAGATAGTAATTAA
tcttgacaagctgacgatgattttgcctctgttatctttgttatgataga
GATAAATGACTTGAAAAGAGTAGAACAGCAGAAACTTTTGTTGAAGTTTA
GGCATTGtaagcaaggtattcccaagaggtatatcatcaaaactTATTGT
TACATTTTATGACTTTAACGAGGTGggaacgaagctagcagtgttatctt
cgaaaatacaaaggagatgaaTGTCCAGTCGTTTAAATGTTCATGCTTAA
GAGTTaagagaactaattttcgtgatAACTAATTTTTGTGGAACTAATTT
CGCTGGAACTAGTTTTCGCGATTTTGAGTGTCTTCCATGAAAATTAGTTC
TCCCAAAtgcaattttttctaaaaatgctcTAGGACACCCACAAAAAGTG
GGTGTCAATCGTGAAGATTTAGTTCCGCAAAATGTGCCAATTTAGTACCC
TCAcatcgcgaaaataagttccgcaaaaaattagttcccttaagttAAGG
TAGAgggcttttttcacatgtacagAAGATTTTACTTAAGATTTCCAAGA
ATGGGGAATTTCCATAAGCTTAGGTATTGTTTGAAGGCCTTAATAAGTGA
ACTTTGCTTACATTCATGCTATGTAATGTCGAGGAAgttcccaaaagaca
gccttacaAACGAATTTACATGATCAAACTTCTGAaagttcttcaaaatt
ttcgttgAATTCTGCCACTTCGTTTGAAAAAAGGGCCAATTTCCCTCCAA
CCCTAACTAATAAAACTCCATCTGGTGGTaggtatttcaaaaatttagat
ttgttTGCCTAGCGATTTTTTCAATATATGGCAAAAGTTTGGCACATCTT
CAGAAGTTGTAGGATTGAGCTAAAATTTCGACCAGTCCCTGCAAGATGAG
GTGTTAAGGTTCTGATATAGTACTTGCAAGAATACTTTTAAAAGTTCTGC
CAAGTTTCTTCACActtttacatgtttttatagAACCTGGAGAAATTAAA
ACTTTTGCCAATATAGTAACTCTGTTCTACTCTTTCAAACCATGCTTTTT
TAAACTCAAAGTTCTCATCTCCTTTCTTTTTATTAGGTTTCAAGCCATAT
TCAAGTTCTTGCTCGCCGTAAGGCCAGGGACATACAAGTAGGTTTAAAGC
AtgtaatttatttattaaatcAGTGCCagaaattttatatttatctCAAA
ATTCATCCATTATCATTCATTTATATCAAGTGTCGTCTTTCCAAAAGGAT
TTTGGTCACCTCATCTTGTTCAAGCCAGtttgaatgaattttaaataact
aattcctttttttgcattattaagttttggcagaaaattttccagttttt
tAGATTAGGTGCCACTTTTTGTGGTGGTTGACAGTGATAGTAAATGCTCT
ATACAATTCAATgtaaaatcaaatctgaaaaCTGTATTTTTCAGGACTCT
CAATCAAAAGACAAGGCACTTCAAGCAATGGCCAACCTAACTTCTTCACA
GATAGTATCTGGAAACAGTCTACATCCATCCAAATTGCTGGAGCCAGCGG
TCAAGAGAGAACTCAATTTGAGCCCACAAAATGTAATACTTTTTGGATCT
TTGAAAAAGTGaatgttgaaaaattgcaaaaattcggGTGTTCCTAAAAG
GTAGGAAGTAGCCCAATTGGGCTACTTATTGGGGTACCCCTTTTTGTCCT
AAATTTTACAAACTGATGCTTAGTTCATGATAAAATGATACTAAAACCTT
CGATTGATAATTTACAAAAATCAGATTTAAGACTGCCATAAAACTTAGGT
CGCAATAGTTATTTTCCCAAAGGTACTGAAATCTACAATTTTTTATCATG
CCATGGTCAGAGACCATGTTGTCTTCCTTCTTCACATACTCGAAAAAATA
GAGACCAGAATAATATTTCTGAAAAACGCAGAACAATGTAATATGTTCTG
TTCGATAAAATGAAGGATGTCGCGAAAATATGATTTCCTTTTATTTTAAT
CTTAATTTTATAAGAGTCTCTAAATTTGGTGTTAAAAGTTATCAGTTTGC
AATTTGATCATTTTGATCTTTTATCCTCTCTTTTCGATCTTTTGTGTTTT
AATTTATTATGTACACAAGAACATATTGACTTACTTCAATAATCTGAGTA
ATGTTATTAAATTTGAAGTTGCTACCCATATACCCTGtcacaaagctcta
tttcatACACCATGTGCTTTGACCACATGGTAACATGTATCTTTGAATAT
CTTCTGCATCATGCAATAgtaattgaattatttttcagattCTTAACTCA
TGGCCTAGCAGATGActttcctacacaaattttccgTTATTTAATTCTGG
TCTGTTGTAAATAAAATGGGTACCCCAATAAGTAGCCCAATTCGGGTACC
CTACCTTTTAGGAACAccccaaaaattctgaaaaaaaaacacgaaaaatg
aaaagatttactaaataaattctcaaattttagtCTGGATACCAACTTTT
TGGTATTTAGGTACCCCGTGGTTTAAGTTTTTTGGgtataccaccacgtc
actaaacatCATGATGTCCtagattttagtactgaccccacCCCACCCCC
CCTGATTCACGAACAAAAAGGACAAAGTTTCAGATTGACATTTAGATTGA
CAGCTAGACATATGTTAAGATTGTGAGCAGGAGCAGGAGCAAAGAATTGT
GCTGCCTAATGTTCAGCCAAACATACATGAACGACTTAAACAGTCAAAAC
TGacgaaaaaattgaagaaaaaagttttaaggACGACAATCCAACAAGTC
TAGGTTAGCCAATGTTAACGATATTGATATAATCtctttttagattttga
taATGATAACAACTATTTTTTTATCAGTATTGGCCATCTCCTCAAAATGG
TGTACCTCCTCCACCTGCACCGCCCATTGGATATCCGTTCACAACTGCAA
GTGCTTTTTATGCCAGTACCATAACACAAGCTTCAACCACTTCCCACGCG
CAAGGCATCAATTCCGACAGACATTCTTCCTCTCGTACTTTAAGTAATCC
AACTTCACCAACTATTCATGATGGACCAGtatgtaatttttatttatggG
ATCCTTctacaaaaattaatttttcattattaCATCACAAAAGGGCTGAC
CAAGCTGATTCGGATGTTACTTGAAAATAAAGACTTTGaacgattttaaa
aattttaaactgaaaattaatttttgaagtgATTTGCTTCATGTTATAAA
TTCATAGATTGCACCCCCACTTTTTTAATAGGGGGTGCCAAAAAATTTGG
GAGCCTTTGTAGGGGGAGGGTACCAAGTGGGGATCAAATAAGAATGGGGG
GGGCTGGAAATGTTGATCAACTCAATCATATACAAATTGTCACGGTctgt
tttcaagtaaaaatatgTACCATCAAAATACAAAAGTGTATCATGTTATT
AAAAAACgctaattatatttttatattgcTCAGATTTTCTGCATAAAAAG
GAGGGTAAGGTTTCATTAAGATGGGGTATGGATATATAGGGGGATGAAAT
AAAGCTAGGGGGTTCTTACCCCTCTGTAGCCTAAATCTAGACTGATccat
ttagaaatattttgcgtAATGgactgttccattaaatttccatacgaacT
TTTCCATAGAAAAAGAAGATTCTTAGAAATGTGTGGAtaacccctggaaa
atggcaaaatttgcaaaagaacctttggaaaaatcattttcataccTTGA
AAAAGTGAGGGTGGATGAACTAATGTCAGTCTTTTANCGACAGACATTCT
TCCTCTCGTACTTTAAGTAATCCAACTTCACCAACTATTCATGATGGACC
AGtatgtaatttttatttatggGATCCTTctacaaaaattaatttttcat
tattaCATCACAAAAGGGCTGACTAAGCTGATTCGGATGTTACTTGAAAA
TAAAGACTTTGaacgattttaaaaattttaaactgaaaattaatttttga
agtgATTTGCTTCATGTTATAAATTCATAGATTGCACCCCCACTTTTTTA
ATAGGGGGTGCCAAAAAATTTGGGAGCCTTTGTAGGGGGAGGGTACCAAG
TGGGGATCAAATAAGAATGGGGGGGGCTGGAAATGTTGATCAACTCAATC
ATATACAAATTGTCACGGTctgttttcaagtaaaaatatgTACCATCAAA
ATACAAAAGTGTATCATGTTATTAAAAAACgctaattatatttttatatt
gcTCAGATTTTCTGCATAAAAAGGAGGGTAAGGTTTCATTAAGATGGGGT
ATGGATATATAGGGGGATGAAATAAAGCTAGGGGGTTCTTACCCCTCTGT
AGCCTAAATCTAGACTGATccatttagaaatattttgcgtAATGgactgt
tccattaaatttccatacgaacTTTTCCATAGAAAAAACGATTCTTAGAA
ATGTGTGGATAACCccttggaaaatggcaaaatttgcaaaagaacctttg
gaaaaatcattttcataccTTGAAAAAGTGAGGGTGGATGAACTAATGTC
AGTCTTTTATCCCTGGAAATCTCAGAATAACCTTTATatgaaaaatactt
tttatacCCCTGGAAGTACTTTATACCCCTGGAAGTACTTTAtacccctg
gaaatgttcgtccatccCCTGTTTGGATATATGgtggaatggcccaatat
gtttaaagggacataacagttcttgccaaatttgtaaacaaactgtatgc
agcggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatcaaa
tcaaatatggctaattttgatagTTCAATTGTTCTACCAATTGTTCAATT
GTTCTactacaagtttgttttggacacgtgattttcattgttctctttaa
tgacacgtggttcgcgcaatgttttactacttttatgtccctttaacgtG
CACTGAtaacatttaaaaagaaacaattttttgtcGGATGCTGTTTTGAA
CAAATACctgaaatttcttattttcttttagCCGCCACCATTACCACACA
GTTCCAGTCTGCAACCCAACAACACGACCTCTAGCCCACCATGGCAGACA
AGACATTCCCAAAACCAAATGCCACTTCGCTTACTTGATTTTTCTGCATA
TATCGAAATTGACAAAACGGAAAGCGTAAGTATCTTATATATCTTATCAT
CTCCAAACTAATGACtcaaagaaaaacattaaatGAACTATTGAATGGCC
TATTTACCTTAAGTTCATTACTCTTCTCTTTTTTAGTACCACAAGCATGT
ctttgtaaatttgaataactaTCGCATATTTGAAGATCCTGGAATCGAAT
CAATTGATATTCGACAAATTTATGACAAGTTTCCTGAAAAGAAAGGTGGT
TTGAAAGAACTTTACGAAAAGGGACCTCAAAATCTCTTCTTCTTGGTCAA
GTTTTGGGTAAGACTACTAAATTTTCTTAGGGTTAGAGCTTTACAAGATC
TCTTAATAAAagtgttttttgacttttttttacaatcCACACAACATCCG
CCTAAAATGTAGCAATAATCTTTCTTTGTAATTAATTTCTATTTCCTCAG
CAGTAGTGTGGAATATAGTCCTTTCCTTTCTTTCCAAGGCTGATTTGAAT
ACGAATATATCGGATGATGCAGCTGCTGCGTACAGAGTATCCAGCACGTA
AGTCACCTTTCTTTAAACACACAATGCTCAACGTGATCTGTACAAGACCA
TAAAGAAGATAGAAAGAACCTcacttacacgcttttttaaagaaattttg
gctTAACCTGagattctttttaaatttttattatttcaagcAATAGAGCT
ATTGTTATGGGGCTAAAATCTGagcatagcttcagccaggtttctagctc
cccccaacaaagtaaggtccccccaacaatttagctccccccaaaaattg
ccttgtgctaggtcccctaacacTNAAAGCTTCTATATCTTAAAACTCTT
CACCTACGTTTTTACCCTAGATATGAATCAACAGAAAATATGACGATCAC
TTGTTCTACCAAGGTTTGCTCTTTCGGTAAGCAAGTTGTGGAGAAAGTGG
AAACGGAGTTCTCATCTTACGAAAATGGCCGCTACGTTTACAGAATTCAT
CGGTCAGCCATGTGCGAATACATGATCAATTTTATCCACAAGCTCAAACA
TTTACCAGAGAAATTCATGATGAATTCAGTTCTCGAAAACTTCACAATTT
TACAAGTATGTGTTTTATTTATTGTCTTCGTCTTGTTTTGTAATCCCTCT
TGGTTTGAACGTTTTCTTGACCCATTAGTCGGAAGTATTCCTGCAATTAT
GTTGATACGATATCGAAGTCAGATGTAAAAACGGAATGCGGTATACGTTA
GAGTTTTTAAAAGTGAAACCTTTAAACCTCAAACGGTTTTCCCCTTACGT
CTCTAATGGTCTCTATAACAGAAACGATTATTCCAGTGCGCCATGGCCAT
TGAATTATGAGAGCTTGACAGTAAACAGTTTTAGCAAAACTACAAAAGGA
TCTTAGGATCCAAAGTTccaaaatggtccagtagggcttgaaatatagcc
tagaaaccaataaatccctcccagatcgaaataatcgatgaaatcaagtt
gaaggcatGGAATTGACATTCTTgctcgaaaaatggtaaattagccaaaa
gtgccaatatattatgacactGATTGTAGATATAACGTTTCTGTAATGCC
AACAAATCTGTTGTTCGAGTTATCAAAGCTATTTTGGATCAAGTTGATTG
AGAAAGTGATTTCCGTAGATCCTCCGGTACAGAATTAAAAATTAGGTGAC
CGGCAGTTGCTTTACTTGCTGATGGGGAaaagattttgaatgttttttat
cCATTTCAGGTCGTAACAAATCGACAAACTCAAGAGACGTTACTTTGTTT
GGCTTttgtttttgaagtttcttCAAATGAACATGGTGCACAGcataatg
ttttcaaattagTCAAAGATTAAATCTTAAATAGctctatttttaacttt
taccaTTATAAATCAGAATCAGTGTTGTGAAAAGTTGTTATTTTTTCTAC
GCGAGTAAATTTTACGCAAacatatatttttggaaaaagaaactGTATAG
ATAATTAGTACCTACTTTTGTAAATATCTAGTGATGGAATATGTATTTTT
CTCGTTATATTTTCCTCATTTTAAAAGAGGGTTAATGCtttattgataaa
attttatattGAGTACGATTTTAGAGGTGCAAGTAATTCCGATCTCTTCT
CTATGTTGGCTATTATTGAAGGTGTTTTAGGAGAAGAAATTTTAACAGGA
AAATAAATCGACAGATGGGCCATTCTTCAATTTCGGTGCAATTTGATGAA
ATGATTTTTGACGAATGACTTTTTATTTGTGGAGAGCAATaagagttttt
ttctatttttgctaTATTTGGTTGAGTTAGAGGAGGTTTAACGTCCATTA
AGGTATATAAGTTATTATGACATAAAAGGCAAGCTACGGAAAATCCATTG
TAgagaatacactttttctaaatttgaaaattcattttcGTGGATAGGAG
TTCCCGTATTTTTCCATagttttcataaatttttcgaTAGACCCTTCCTG
ATAACACCAACAACAAATAAGAACGGGATGCTGATctatttttttaatga
ctttaTCTTAGTGTTTTAGCTAAGTATAAAATTTTGTATCAGttagtttt
caaagagaaatttGTTAAAAGATGTACATTTGGAAAACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015753XLOC_015753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027870-exon-sc0000649-1491911889:90185..90329TCONS_00027870-exon-sc0000649-1491911889:90185..90329Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:90185..90329TCONS_00027870-exon-sc0000649-1510915933:90185..90329Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:90185..90329TCONS_00027870-exon-sc0000649-1575043694:90185..90329Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:90542..90842TCONS_00027870-exon-sc0000649-1491911889:90542..90842Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:90542..90842TCONS_00027870-exon-sc0000649-1510915933:90542..90842Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:90542..90842TCONS_00027870-exon-sc0000649-1575043694:90542..90842Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:92493..92557TCONS_00027870-exon-sc0000649-1491911889:92493..92557Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:92493..92557TCONS_00027870-exon-sc0000649-1510915933:92493..92557Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:92493..92557TCONS_00027870-exon-sc0000649-1575043694:92493..92557Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:96721..96771TCONS_00027870-exon-sc0000649-1491911889:96721..96771Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:96721..96771TCONS_00027870-exon-sc0000649-1510915933:96721..96771Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:96721..96771TCONS_00027870-exon-sc0000649-1575043694:96721..96771Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:97079..97216TCONS_00027870-exon-sc0000649-1491911889:97079..97216Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:97079..97216TCONS_00027870-exon-sc0000649-1510915933:97079..97216Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:97079..97216TCONS_00027870-exon-sc0000649-1575043694:97079..97216Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:98512..98712TCONS_00027870-exon-sc0000649-1491911889:98512..98712Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:98512..98712TCONS_00027870-exon-sc0000649-1510915933:98512..98712Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:98512..98712TCONS_00027870-exon-sc0000649-1575043694:98512..98712Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:100666..100809TCONS_00027870-exon-sc0000649-1491911889:100666..100809Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:100666..100809TCONS_00027870-exon-sc0000649-1510915933:100666..100809Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:100666..100809TCONS_00027870-exon-sc0000649-1575043694:100666..100809Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:100921..101091TCONS_00027870-exon-sc0000649-1491911889:100921..101091Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:100921..101091TCONS_00027870-exon-sc0000649-1510915933:100921..101091Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:100921..101091TCONS_00027870-exon-sc0000649-1575043694:100921..101091Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:101273..101331TCONS_00027870-exon-sc0000649-1491911889:101273..101331Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:101273..101331TCONS_00027870-exon-sc0000649-1510915933:101273..101331Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:101273..101331TCONS_00027870-exon-sc0000649-1575043694:101273..101331Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:101655..101889TCONS_00027870-exon-sc0000649-1491911889:101655..101889Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:101655..101889TCONS_00027870-exon-sc0000649-1510915933:101655..101889Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:101655..101889TCONS_00027870-exon-sc0000649-1575043694:101655..101889Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1491911889:102544..103426TCONS_00027870-exon-sc0000649-1491911889:102544..103426Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1510915933:102544..103426TCONS_00027870-exon-sc0000649-1510915933:102544..103426Clytia hemisphaericaexon
TCONS_00027870-exon-sc0000649-1575043694:102544..103426TCONS_00027870-exon-sc0000649-1575043694:102544..103426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000649supercontigsc0000649:90185..103426 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03309	1.45814	0.955981	0.360549	38.6261	28.7886	25.4412	30.3981	0.269191	1.28663	0.577845	1.38216	0.00919103	1.88301	1.25442	0.431031	1.11523	1.09736	0.546378	1.38066	7.36017	8.00161	7.0038	4.87765	7.33861	7.1733	9.36345	4.19008	6.4251	5.43854
Blast
[Close]
BLAST of TCONS_00027870 vs. Swiss-Prot (Human)
Match: TEAD1 (Transcriptional enhancer factor TEF-1 OS=Homo sapiens GN=TEAD1 PE=1 SV=2)

HSP 1 Score: 482.256 bits (1240), Expect = 2.013e-162
Identity = 267/450 (59.33%), Postives = 319/450 (70.89%), Query Frame = 2 
Query:  290 ERVSASTDPESMASDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRSRKQVSSHIQVLARRKARD----IQDSQSKDKALQAMANLTSSQIVSGNSLHPSKLLEPAVKRELNLSPQNYWXXXXXXXXXXXXXXXXXXFTTASAFYASTITQASTTSHAQGINSDRHSSSRTLSNPTSPTIHDGXXXXXXXXXXXXXNNTTSSPPWQTRHSQNQMPLRLLDFSAYIEIDK-TESYHKHVFVNLNNY-RIFEDPGIESIDIRQIYDKFPXXXXXXXXXXXXXPQNLFFLVKFWADLNTNISDDAAAAYRVSSTYESTENMTITCSTKVCSFGKQVVEKVETEFSSYENGRYVYRIHRSAMCEYMINFIHKLKHLPEKFMMNSVLENFTILQVVTNRQTQETLLCLAFVFEVSSNEHGAQHNVFKLVKD 1621
            ER+S S D + + +DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTR+RKQVSSHIQVLARRK+RD    ++D  +KDKALQ MA ++S+QIVS  ++H +KL  P + R                            F  A  F+   I Q      +Q +      +       T+P                      S P WQ R S     LRL++FSA++E  +  +SY+KH+FV++ +    + DP +ES+DIRQIYDKFPEKKGGLKEL+ KGPQN FFLVKFWADLN NI DDA A Y V+S YES+ENMT+TCSTKVCSFGKQVVEKVETE++ +ENGR+VYRI+RS MCEYMINFIHKLKHLPEK+MMNSVLENFTIL VVTNR TQETLLC+A VFEVS++EHGAQH++++LVKD
Sbjct:   17 ERMSDSAD-KPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIH-NKLGLPGIPRP--------------------------TFPGAPGFWPGMI-QTGQPGSSQDVKPFVQQAYPIQPAVTAPI----------PGFEPASAPAPSVPAWQGR-SIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD 426
The following BLAST results are available for this feature:
BLAST of TCONS_00027870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEAD12.013e-16259.33Transcriptional enhancer factor TEF-1 OS=Homo sapi... [more]
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