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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027864 ID=TCONS_00027864|Name=TCONS_00027864|organism=Clytia hemisphaerica|type=transcript|length=1492bpRun BLAST on NCBI protein sequence of TCONS_00027864-protein >TCONS_00027864-protein ID=TCONS_00027864-protein|Name=TCONS_00027864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp XIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLHTLKLNNNGLGRun BLAST on NCBI transcript from alignment at sc0000649:31557..48029+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027864 ID=TCONS_00027864|Name=TCONS_00027864|organism=Clytia hemisphaerica|type=transcript|length=16473bp|location=Sequence derived from alignment at sc0000649:31557..48029+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000649:31557..48029+ >TCONS_00027864 ID=TCONS_00027864|Name=TCONS_00027864|organism=Clytia hemisphaerica|type=CDS|length=19530bp|location=Sequence derived from alignment at sc0000649:31557..48029+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027864 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 7.556e-63 Identity = 135/250 (54.00%), Postives = 177/250 (70.80%), Query Frame = 1
Query: 4 IITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLHTXXXXXXXXXXXXXXXXSEAFIDCHKSSSAAGTPFALKVFISGRNRLENEGAKALSKAFKLLGSLEEITMPQNGIRPEGVVLLADAFKKNSHLKCININDNTCTETGAKALADCIHHLENLETLNIGDCLVRDRGAEILAPSL-AATKSLKTVILSFNEIRRDGAMAVVNGMKNKTSLELLNLDGNQLGE--CIEEIQDRMSEFNMINSLG 744
+ITAGA+L LDLSDNAFGPDGV G + LL+S + + L LKLNN G+GIGGGKIL+ A +CH+ SSA G P ALKVF++GRNRLEN+GA AL++AF+++G+LEE+ MPQNGI G+ LA AF N L+ IN+NDNT TE GA A+A+ + L +E +N GDCLVR +GA +A ++ LK + LSF EI+RD A+AV M +K LE L+L+GN LGE C E++Q+ + FNM L
Sbjct: 107 LITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGC-EQLQEVLEGFNMAKVLA 355 HSP 2 Score: 94.7449 bits (234), Expect = 1.650e-20 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 1015 QQGVLPSTDKTARHFVHICGCMENDES---AIKEISECVLGEAFKDSRVEPQQLVTSLLVHMGLLKAETKVEKVEGLKGPLSGLENVILQEYFPRAITQYFIAFLLKPNSLLDSCHDERHRVLQKLYQ 1389
QQ +K F+ + +++ + A+++ + ++ +AF S +T LLVHMGLLK+E KV+ + L GPL L +++ Q+YFP+A+ +AF+ KPNS L+SC RH +LQ LY+
Sbjct: 459 QQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYK 586 The following BLAST results are available for this feature:
BLAST of TCONS_00027864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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