TCONS_00027864-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027864-protein
Unique NameTCONS_00027864-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027864-protein ID=TCONS_00027864-protein|Name=TCONS_00027864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
XIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLHTLKLNNNGLG
IGGGKILSEAFIDCHKSSSAAGTPFALKVFISGRNRLENEGAKALSKAFK
LLGSLEEITMPQNGIRPEGVVLLADAFKKNSHLKCININDNTCTETGAKA
LADCIHHLENLETLNIGDCLVRDRGAEILAPSLAATKSLKTVILSFNEIR
RDGAMAVVNGMKNKTSLELLNLDGNQLGECIEEIQDRMSEFNMINSLGPF
DDNEEPDSDEENDNDEEDEEQNKSNIDVGDQDDLTSQIGSMGLNKTTPSK
GKKACSVDNIRNFADNPSYKTWMEYDVNQRKHALKNYMQQGVLPSTDKTA
RHFVHICGCMENDESAIKEISECVLGEAFKDSRVEPQQLVTSLLVHMGLL
KAETKVEKVEGLKGPLSGLENVILQEYFPRAITQYFIAFLLKPNSLLDSC
HDERHRVLQKLYQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015750XLOC_015750Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027864TCONS_00027864Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009109Ran_GTPase_activating_1_C
IPR001611Leu-rich_rpt
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005096GTPase activator activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 186..213
e-value: 82.0
score: 3.6
coord: 158..185
e-value: 0.22
score: 20.6
coord: 36..63
e-value: 0.03
score: 23.5
coord: 102..129
e-value: 0.94
score: 17.3
coord: 130..157
e-value: 0.018
score: 24.2
coord: 6..33
e-value: 0.0047
score: 26.1
NoneNo IPR availableGENE3D1.25.40.200coord: 300..462
e-value: 6.7E-27
score: 93.9
NoneNo IPR availableGENE3D3.40.50.2000coord: 75..169
e-value: 2.4E-27
score: 95.5
coord: 3..69
e-value: 2.4E-7
score: 30.1
coord: 170..236
e-value: 8.9E-13
score: 47.9
NoneNo IPR availableCDDcd00116LRR_RIcoord: 4..254
e-value: 4.13643E-51
score: 176.392
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 8..231
IPR009109Ran-GTPase activating protein 1, C-terminalPFAMPF07834RanGAP1_Ccoord: 339..462
e-value: 9.5E-28
score: 96.9
IPR009109Ran-GTPase activating protein 1, C-terminalSUPERFAMILY69099Ran-GTPase activating protein 1 (RanGAP1), C-terminal domaincoord: 309..463
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 159..177
e-value: 0.63
score: 10.1
coord: 129..152
e-value: 0.0089
score: 15.9
coord: 8..25
e-value: 0.017
score: 15.0
coord: 188..207
e-value: 0.59
score: 10.2

Blast
[Close]
BLAST of TCONS_00027864-protein vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.237e-78
Identity = 135/250 (54.00%), Postives = 177/250 (70.80%), Query Frame = 0 
Query:    2 IITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLHTLKLNNNGLGIGGGKILSEAFIDCHKSSSAAGTPFALKVFISGRNRLENEGAKALSKAFKLLGSLEEITMPQNGIRPEGVVLLADAFKKNSHLKCININDNTCTETGAKALADCIHHLENLETLNIGDCLVRDRGAEILAPSL-AATKSLKTVILSFNEIRRDGAMAVVNGMKNKTSLELLNLDGNQLGE--CIEEIQDRMSEFNMINSLG 248
            +ITAGA+L  LDLSDNAFGPDGV G + LL+S + + L  LKLNN G+GIGGGKIL+ A  +CH+ SSA G P ALKVF++GRNRLEN+GA AL++AF+++G+LEE+ MPQNGI   G+  LA AF  N  L+ IN+NDNT TE GA A+A+ +  L  +E +N GDCLVR +GA  +A ++      LK + LSF EI+RD A+AV   M +K  LE L+L+GN LGE  C E++Q+ +  FNM   L 
Sbjct:  107 LITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGC-EQLQEVLEGFNMAKVLA 355
The following BLAST results are available for this feature:
BLAST of TCONS_00027864-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAGP18.237e-7854.00Ran GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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