TCONS_00027863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027863
Unique NameTCONS_00027863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027863 ID=TCONS_00027863|Name=TCONS_00027863|organism=Clytia hemisphaerica|type=transcript|length=303bp
ccagaaaaaaacaatttatattCTGATAAAAAAAGAGATTCCAAAAGAAA
GGCAATAATGGGAGAAGTATGCTTTCTTGATCGAAAGCTGAAGTTGGATT
GTGCATCAGATGCAAACGAGATTGTTGAAGCCATCGGAAAATGCAAGAAC
TTGGAAACGTTACAGCTACAAGGAAATACTCTTGGTGTAGAAGCTGCTAA
AGTGATATCAGATGCATTAAAAGATAAAACAACATTCAAGAACGCGCTAT
GGAGTGACATGTATACCGGACGACTCCGTTCGGAAATCCCTCCCTCTTTG
GTA
Run BLAST on NCBI

protein sequence of TCONS_00027863-protein

>TCONS_00027863-protein ID=TCONS_00027863-protein|Name=TCONS_00027863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
PEKNNLYSDKKRDSKRKAIMGEVCFLDRKLKLDCASDANEIVEAIGKCKN
LETLQLQGNTLGVEAAKVISDALKDKTTFKNALWSDMYTGRLRSEIPPSL
V
Run BLAST on NCBI

transcript from alignment at sc0000649:28788..29948+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027863 ID=TCONS_00027863|Name=TCONS_00027863|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0000649:28788..29948+ (Clytia hemisphaerica)
ccagaaaaaaacaatttatattCTGATAAAAAAAGAGATTCCAAAAGAAA
GGCAATAATGGGAGAAGTATGCTTTCTTGATCGAAAGCTGAAGTTGGATT
GTGCATCAGATGGTACGTGCACACTCAACTCTATTATCTACTACTAATAC
ACATTAAACACTTACAAATATCTGAGCATGATAGAGTCAAAGATATAAGT
GTTTCGAGATGATCAAATAAGCTTTTTGATATcttcttgatattttgata
aTGAGTGAAAGTAGTCCAGAGCTTGAACTAGTGCCCTCGTGCTTTCATTT
TATCTCGCTTTATTACTTGATTGTTCCATGTCAATTTCCATTGGATTTTT
CTCTCAGCAAACGAGATTGTTGAAGCCATCGGAAAATGCAAGAACTTGGA
AACGTTACAGCTACAAGGAAATACTCTTGGTGTAGAAGCTGCTAAAGTGA
TATCAGATGCATTAAAAGATAAAACAACATTCAAGGTaggacaattttga
aaattaattcaatcTTTACATGAGTAGTCTTGATATGCGTTTTTACCTAC
CTGGACGTCCCATGAAATTGACCGTTGTCTGTCCGTATGACAGCCCGGTA
CGAACTTTTCCGTTTTTTGCGAAAACCTTTTTTGCGTATTGAATTTAGTA
GAGTTTAAAGCTGGTGGTACTATGTGGTTTAGGCTGAATCTAGATTAGAc
aacaaaaataatttggaaGGAGTCAAATACTGCTAAATCACTTTTATGGA
GCGAGGTGGTAGGGAGGACTTTGTGCACACTTGTTTCTATTGGGTGAACA
TCTGAGGAtatctctttcattttttacaagGTTTGATAATTGGGACCTGG
GGACGAGTCTTTTTCACTAGTGCTAGGTATgaggaatatttttttcaagg
gTACATTTACAGGACGATCAATCAATTtagcaaatatttcaattttccag
ggggtatccacaaaTTGTCAAGAATTATTTTTGGCTTGAAGGTTCGTCCG
ACCCCCAGTATGGGTTTTACATGGAACAGCCCAATAGTTGAAAGTTGTGC
ACATTCTTTTCTTAGGAACTACTAGCTTTCTAATTTCTACTTCTTTAGAA
CGCGCTATGGAGTGACATGTATACCGGACGACTCCGTTCGGAAATCCCTC
CCTCTTTGGTA

Coding sequence (CDS) from alignment at sc0000649:28788..29948+

>TCONS_00027863 ID=TCONS_00027863|Name=TCONS_00027863|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000649:28788..29948+ (Clytia hemisphaerica)
ccagaaaaaaacaatttatattCTGATAAAAAAAGAGATTCCAAAAGAAA
GGCAATAATGGGAGAAGTATGCTTTCTTGATCGAAAGCTGAAGTTGGATT
GTGCATCAGATGCAAACGAGATTGTTGAAGCCATCGGAAAATGCAAGAAC
TTGGAAACGTTACAGCTACAAGGAAATACTCTTGGTGTAGAAGCTGCTAA
AGTGATATCAGATGCATTAAAAGATAAAACAACATTCAAGAACGCGCTAT
GGAGTGACATGTATACCGGACGACTCCGTTCGGAAATCCCTCCCTCTTTG
GTAccagaaaaaaacaatttatattCTGATAAAAAAAGAGATTCCAAAAG
AAAGGCAATAATGGGAGAAGTATGCTTTCTTGATCGAAAGCTGAAGTTGG
ATTGTGCATCAGATGCAAACGAGATTGTTGAAGCCATCGGAAAATGCAAG
AACTTGGAAACGTTACAGCTACAAGGAAATACTCTTGGTGTAGAAGCTGC
TAAAGTGATATCAGATGCATTAAAAGATAAAACAACATTCAAGAACGCGC
TATGGAGTGACATGTATACCGGACGACTCCGTTCGGAAATCCCTCCCTCT
TTGGTAccagaaaaaaacaatttatattCTGATAAAAAAAGAGATTCCAA
AAGAAAGGCAATAATGGGAGAAGTATGCTTTCTTGATCGAAAGCTGAAGT
TGGATTGTGCATCAGATGCAAACGAGATTGTTGAAGCCATCGGAAAATGC
AAGAACTTGGAAACGTTACAGCTACAAGGAAATACTCTTGGTGTAGAAGC
TGCTAAAGTGATATCAGATGCATTAAAAGATAAAACAACATTCAAGAACG
CGCTATGGAGTGACATGTATACCGGACGACTCCGTTCGGAAATCCCTCCC
TCTTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015751XLOC_015751Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027863-proteinTCONS_00027863-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027863-exon-sc0000649-1491911889:28788..28899TCONS_00027863-exon-sc0000649-1491911889:28788..28899Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1510915933:28788..28899TCONS_00027863-exon-sc0000649-1510915933:28788..28899Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1575043694:28788..28899TCONS_00027863-exon-sc0000649-1575043694:28788..28899Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1491911889:29145..29272TCONS_00027863-exon-sc0000649-1491911889:29145..29272Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1510915933:29145..29272TCONS_00027863-exon-sc0000649-1510915933:29145..29272Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1575043694:29145..29272TCONS_00027863-exon-sc0000649-1575043694:29145..29272Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1491911889:29886..29948TCONS_00027863-exon-sc0000649-1491911889:29886..29948Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1510915933:29886..29948TCONS_00027863-exon-sc0000649-1510915933:29886..29948Clytia hemisphaericaexon
TCONS_00027863-exon-sc0000649-1575043694:29886..29948TCONS_00027863-exon-sc0000649-1575043694:29886..29948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000649supercontigsc0000649:28788..29948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
280.148	233.111	154.116	138.249	16.2711	17.2775	49.4452	54.0049	76.2557	73.2027	93.2084	73.8272	95.7917	93.2306	115.615	146.819	125.108	119.528	45.2917	41.5226	72.1814	68.2814	126.669	134.419	115.779	94.6588	58.4221	75.592	65.7038	76.7485
Blast
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BLAST of TCONS_00027863 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.656e-22
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   40 SKRKAIMGEVCFLDRKLKLDCASDANEIVEAIGKCKNLETLQLQGNTLGVEAAKVISDALKDKTTFKNALWSDMYTGRLRSEIPPSLV 303
            +K +   G++ F  + LKL+ A DA ++++ I    +LE L+L+GNT+GVEAA+VI+ AL+ K+  K   WSDM+TGRLR+EIPP+L+
Sbjct:   14 AKTQVAGGQLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALI 101
The following BLAST results are available for this feature:
BLAST of TCONS_00027863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAGP12.656e-2247.73Ran GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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