TCONS_00027850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027850
Unique NameTCONS_00027850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027850 ID=TCONS_00027850|Name=TCONS_00027850|organism=Clytia hemisphaerica|type=transcript|length=385bp
GGTGTTATATATTGGAATTTGGTAAAGTATacagactaaaattgttcctg
ctttagaaatttatgaaggataaaaatatttctcacaAAGTTATATATAC
TGAAGATTTAATATCAGTCATTTTAAGGAAAGGAAAAGATTTGATATATA
AGCAGCTTAATAAGATCTAAATTAAAAAGACAagaatgtttttgtatttt
tgaagattatacattttttgatttattatttttttgaaatcattcCAATA
TCAGATGAAAAATACAATAAGAAAGATTGACTTTGAAACAAAAGAGAGAT
GGTCAATTTAAAAGAATGAGAAACACAAAACCACCAAACACCAAATAACA
ACTCTCAACACACAtatgaatagaaaacaaaaact
Run BLAST on NCBI

transcript from alignment at sc0000647:42246..42630

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027850 ID=TCONS_00027850|Name=TCONS_00027850|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0000647:42246..42630 (Clytia hemisphaerica)
agtttttgttttctattcataTGTGTGTTGAGAGTTGTTATTTGGTGTTT
GGTGGTTTTGTGTTTCTCATTCTTTTAAATTGACCATCTCTCTTTTGTTT
CAAAGTCAATCTTTCTTATTGTATTTTTCATCTGATATTGgaatgatttc
aaaaaaataataaatcaaaaaatgtataatcttcaaaaatacaaaaacat
tctTGTCTTTTTAATTTAGATCTTATTAAGCTGCTTATATATCAAATCTT
TTCCTTTCCTTAAAATGACTGATATTAAATCTTCAGTATATATAACTTtg
tgagaaatatttttatccttcataaatttctaaagcaggaacaattttag
tctgtATACTTTACCAAATTCCAATATATAACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015739XLOC_015739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027850-exon-sc0000647-1491911889:42246..42630TCONS_00027850-exon-sc0000647-1491911889:42246..42630Clytia hemisphaericaexon
TCONS_00027850-exon-sc0000647-1510915933:42246..42630TCONS_00027850-exon-sc0000647-1510915933:42246..42630Clytia hemisphaericaexon
TCONS_00027850-exon-sc0000647-1575043694:42246..42630TCONS_00027850-exon-sc0000647-1575043694:42246..42630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:42246..42630 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201578	0	0.912948	0	0	0	0	0	0.339732	0.631219	0	1.20825	0.134063	0.835356	0.801239	0.859852	0.151324	0.930613	0.642846	0.672692	0.974486	0.570384	0.231125	0.210127	0.216425	0	0.276404	0	0.671208	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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